EsuBft1180_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1180_4a-0001
Unique Name	EsuBft1180_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:184712..187485 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	296587.XP_002506989.1
ProteomeId	EsuBft1180_4
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	277
Hectar predicted targeting category	other localisation
Evalue	1.21e-15
EggNOG OGs	2E24P@1\|root,2S9D9@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_4a	EsuBft1180_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 184712..187485 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_4a-0001-exon	EsuBft1180_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 184712..187485 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_4a-0001-exon	agat-five_prime_utr-1147	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_106 184712..184917 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_4a-0001-cds	EsuBft1180_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 184918..187485 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1180_4a-0001	EsuBft1180_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 184918..187485 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:184712..187485+
coding sequence from alignment at Scaffold_106:184712..187485+

spliced messenger RNA

>EsuBft1180_4a-0001 ID=EsuBft1180_4a-0001|Name=EsuBft1180_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2774bp|location=Sequence derived from alignment at Scaffold_106:184712..187485+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCAAACACTTCCAACATGTCGTCATCCTCTTCGTGCAAGCATTTGGAGCT
GTACACATAGATCAGCAGAAGTCAGATACCTCAGATCTGTCTCCTCTTGC
AGCGGAAAGATATGAAGTAGCACGTGTTGAAAGACAACTCCAACTTGTCC
GAGCAACAAAGTTGCTTCATCTTACCCCAGCATTGCATGGATCGACTGAT
GGAAGGATGAACAGGGTATCCCGATTTAACCGCTTTGCAAATGGTGATCT
GAGTGAACCTATCGCCTGGCTCATGATGTACGAGAAGAATCGTCGACTTC
AGTATTATGCGGATACTGAAGACAATCGCCAAAGAAGAGCCACAAGACTT
GCGCACGAAAGCGGAGGCATCACTAAAGCTGCCAGTGCCTTAATTTCCCC
AGCACCTTCACCGCGCAACAACGACACGCTGGAGCATCTTCGCAACCTAC
ACCCTAACGAAGATCCTGACGATATTGCTACTGCGTGGGATTCCAGCATC
AAAGCTGCGGGAGATCGTATAAAAACGCACAAGATCGACTCCGTTGCCGA
AGCTGATGAACCATTCGAAATCAAGTTCATCAAGCAGACGGTAAAGAAAG
CCAACCCTCAGAGTGCTCCGGGGCCTGATGGTCTTCGTTTTTCGTATCTC
CAAGCTGGTGGGATGAGTGATTTTTTTACTGAAACCTTGGCGGACTTCAG
CTTTAAAGTCTTCTACTACGGAGACGAGCTTCCGGATTTCTTTTGGAACC
TCCACACCAGTGCCAACCTTTCAGCGCTGGGAGAGAAAAAACGGCCGATT
GCAGTTGGAGGGGTTTTGCGTCGCATCATCAGCGGCAGCTTCTGCCGCCA
GTACAAGGGAGGAATTGCGAACATCTTCGAAGCAGCAAATCAGTTCGGAG
GTGGTGTTCCAGGAGGAGTTGAGATAGTGGCTTCCACAGCAGCCCTCAGC
CACCAGCAAGGCAGCACCATTCTCTCCTTTGATGGGAAAAACGCTTACAA
CAGCATGCGCAGATCTTCCATCTTGCCAGCAGTGGCCACTCATACGCCAC
ACTTGGTGAAGTACTTCGGGAACATCTACGCTCGAACCAAGGCGAAACTT
CTGTTCAAAATGGAAGATGGTTCGATCGAGGTTGTTCTTTCACAGCGCGG
AGTTCAACAAGGCTGCAATTTGGGAGGGTTTGGCTTCTGTGTAGGACTTC
TTGATATCATGAAAGAGTTCAACAACAAGCCACCAGTGCCAGGAGTCAAA
CTCATCGGATACGTCGACGACCTCCAAGCACATCTTCCACCAGGTTTGGC
TAGGAACATGCAGGCCATATCCACTGTAACGAATTGGATTCAGGAACGTC
TCTCCCAAAAAGGCATTGAGCTCAGTCTCCCGAAATCCAAAGTGCTTTTC
CCGGAAGGTCTTTGCATGTCCTCTTTGACAAACGACGAACAGCAACAATT
GACGAAAATTGGTCTGTCAGTTACTGAAGGTGGCATGCCAGTTGTCGGGA
TCCCAGTAGGAACAGAGGAGTTCCAGAGGAATTTCGTTTCCAAAATCGCC
CGTGGTGACCCGGCGGAATTGATACTCCGCCTAGCAACGCTTGACGACCC
TCAAGCCAGCTATCAACTGCTGCGTTTATCTGGTGTGCCACGTTTGTTCC
ATCTGCTGAGGACGATTGCACCGTCTATCACCAACTCTGCCGCAAAAATA
CATGACAACATGATGATGTGGGCAATGAGTAAGATCGTCCTTGGCAAGAT
GGCCGACAGCATGAGAATACCAACGGTCAAAGAGGTACGCGCAGACCCGA
CGAAGAGCGAGGAGGTAGATTTCTTCAAAGGGACAGCTCGGGCGCAGGTG
CACCTACCCATGCGAGAAGGAGGACTAGGAATCACGAGCAATGTTCTCAT
TCGAGAATCGGCTTTTGTGGCAGGGCAAGCGCTGGTGTTCTCCAAGTCAG
TGCAAGCATCGACAGGATACACAGTTGAGCAATGTCTACCCCGGCTTGCC
CAGCTACCGACAGGATTGGCTCTGATTGACTCGCTGAAGAAGCTAGAGGA
AATCATCACCAAAGACAAGCTTGAAAAAGCTGTTGGGCAGTCATGGGCTA
AACTTGCCACAAGTGATGAGTTAACCCCCGCCCTCAAAGGAGTTTACTTG
TTGGAAGCAGGGAAGGCGGGAAAACCCCGTGAAGATGGAAACCCTGACGT
AGAACATCAACCACCGTCTACCTTCAGCCGAAATGAATTTGGTCAACACT
ACCAAGTCTTTGGAGCCCAAGCTCTCCTTTCGAAACCTCTTCATGCAGCA
GTGCGCCACATGGTGGAGACAGACTTGCAGAAAGTAGTAGGCGAGGAAAC
GCCAAAGAAGAGGGCGTTGATCCGCTTGGAGGAAGCGAAAGGCAAGGGAG
TTTTGTCGTGGTTGACAACGCAAGGGTTGTCAGCAGATGAAAGAATGCTG
CCTGATCTATATCGAGAGTCAATCGGTCGTGTACTGGGGAGTCACGATCG
AGCAGACTGCAACACAGGCAAACTTTGTGGTGCAGGTGCATTGTTACCAT
GCAAGGACCGCTTGAGCCGAGCCCACTCCCTCGTCTGCACCAAGACCGGC
GCCTCAACCTTCCTCCATAACAGGATGGTTCGAGTGGTCCTCAAGACACT
GCGCGAGTGCCATATGCCCATCGCCGTTGAGGATTCTTCCCCTTTTACCA
CAGGCACTGGTAGGGGAAAGGGGCCATACAAGATGGATTTGGTAATCCCC
CCAGGATTACACNNNNNNNNNNNN

protein sequence of EsuBft1180_4a-0001

>EsuBft1180_4 ID=EsuBft1180_4|Name=EsuBft1180_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=856bp
MNRVSRFNRFANGDLSEPIAWLMMYEKNRRLQYYADTEDNRQRRATRLAH
ESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKA
AGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQA
GGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAV
GGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQ
QGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLF
KMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLI
GYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPE
GLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARG
DPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHD
NMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHL
PMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYTVEQCLPRLAQL
PTGLALIDSLKKLEEIITKDKLEKAVGQSWAKLATSDELTPALKGVYLLE
AGKAGKPREDGNPDVEHQPPSTFSRNEFGQHYQVFGAQALLSKPLHAAVR
HMVETDLQKVVGEETPKKRALIRLEEAKGKGVLSWLTTQGLSADERMLPD
LYRESIGRVLGSHDRADCNTGKLCGAGALLPCKDRLSRAHSLVCTKTGAS
TFLHNRMVRVVLKTLRECHMPIAVEDSSPFTTGTGRGKGPYKMDLVIPPG
LHXXXX

mRNA from alignment at Scaffold_106:184712..187485+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1180_4a-0001 ID=EsuBft1180_4a-0001|Name=EsuBft1180_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2774bp|location=Sequence derived from alignment at Scaffold_106:184712..187485+ (Ectocarpus subulatus male Bft15b)
GCAAACACTTCCAACATGTCGTCATCCTCTTCGTGCAAGCATTTGGAGCT
GTACACATAGATCAGCAGAAGTCAGATACCTCAGATCTGTCTCCTCTTGC
AGCGGAAAGATATGAAGTAGCACGTGTTGAAAGACAACTCCAACTTGTCC
GAGCAACAAAGTTGCTTCATCTTACCCCAGCATTGCATGGATCGACTGAT
GGAAGGATGAACAGGGTATCCCGATTTAACCGCTTTGCAAATGGTGATCT
GAGTGAACCTATCGCCTGGCTCATGATGTACGAGAAGAATCGTCGACTTC
AGTATTATGCGGATACTGAAGACAATCGCCAAAGAAGAGCCACAAGACTT
GCGCACGAAAGCGGAGGCATCACTAAAGCTGCCAGTGCCTTAATTTCCCC
AGCACCTTCACCGCGCAACAACGACACGCTGGAGCATCTTCGCAACCTAC
ACCCTAACGAAGATCCTGACGATATTGCTACTGCGTGGGATTCCAGCATC
AAAGCTGCGGGAGATCGTATAAAAACGCACAAGATCGACTCCGTTGCCGA
AGCTGATGAACCATTCGAAATCAAGTTCATCAAGCAGACGGTAAAGAAAG
CCAACCCTCAGAGTGCTCCGGGGCCTGATGGTCTTCGTTTTTCGTATCTC
CAAGCTGGTGGGATGAGTGATTTTTTTACTGAAACCTTGGCGGACTTCAG
CTTTAAAGTCTTCTACTACGGAGACGAGCTTCCGGATTTCTTTTGGAACC
TCCACACCAGTGCCAACCTTTCAGCGCTGGGAGAGAAAAAACGGCCGATT
GCAGTTGGAGGGGTTTTGCGTCGCATCATCAGCGGCAGCTTCTGCCGCCA
GTACAAGGGAGGAATTGCGAACATCTTCGAAGCAGCAAATCAGTTCGGAG
GTGGTGTTCCAGGAGGAGTTGAGATAGTGGCTTCCACAGCAGCCCTCAGC
CACCAGCAAGGCAGCACCATTCTCTCCTTTGATGGGAAAAACGCTTACAA
CAGCATGCGCAGATCTTCCATCTTGCCAGCAGTGGCCACTCATACGCCAC
ACTTGGTGAAGTACTTCGGGAACATCTACGCTCGAACCAAGGCGAAACTT
CTGTTCAAAATGGAAGATGGTTCGATCGAGGTTGTTCTTTCACAGCGCGG
AGTTCAACAAGGCTGCAATTTGGGAGGGTTTGGCTTCTGTGTAGGACTTC
TTGATATCATGAAAGAGTTCAACAACAAGCCACCAGTGCCAGGAGTCAAA
CTCATCGGATACGTCGACGACCTCCAAGCACATCTTCCACCAGGTTTGGC
TAGGAACATGCAGGCCATATCCACTGTAACGAATTGGATTCAGGAACGTC
TCTCCCAAAAAGGCATTGAGCTCAGTCTCCCGAAATCCAAAGTGCTTTTC
CCGGAAGGTCTTTGCATGTCCTCTTTGACAAACGACGAACAGCAACAATT
GACGAAAATTGGTCTGTCAGTTACTGAAGGTGGCATGCCAGTTGTCGGGA
TCCCAGTAGGAACAGAGGAGTTCCAGAGGAATTTCGTTTCCAAAATCGCC
CGTGGTGACCCGGCGGAATTGATACTCCGCCTAGCAACGCTTGACGACCC
TCAAGCCAGCTATCAACTGCTGCGTTTATCTGGTGTGCCACGTTTGTTCC
ATCTGCTGAGGACGATTGCACCGTCTATCACCAACTCTGCCGCAAAAATA
CATGACAACATGATGATGTGGGCAATGAGTAAGATCGTCCTTGGCAAGAT
GGCCGACAGCATGAGAATACCAACGGTCAAAGAGGTACGCGCAGACCCGA
CGAAGAGCGAGGAGGTAGATTTCTTCAAAGGGACAGCTCGGGCGCAGGTG
CACCTACCCATGCGAGAAGGAGGACTAGGAATCACGAGCAATGTTCTCAT
TCGAGAATCGGCTTTTGTGGCAGGGCAAGCGCTGGTGTTCTCCAAGTCAG
TGCAAGCATCGACAGGATACACAGTTGAGCAATGTCTACCCCGGCTTGCC
CAGCTACCGACAGGATTGGCTCTGATTGACTCGCTGAAGAAGCTAGAGGA
AATCATCACCAAAGACAAGCTTGAAAAAGCTGTTGGGCAGTCATGGGCTA
AACTTGCCACAAGTGATGAGTTAACCCCCGCCCTCAAAGGAGTTTACTTG
TTGGAAGCAGGGAAGGCGGGAAAACCCCGTGAAGATGGAAACCCTGACGT
AGAACATCAACCACCGTCTACCTTCAGCCGAAATGAATTTGGTCAACACT
ACCAAGTCTTTGGAGCCCAAGCTCTCCTTTCGAAACCTCTTCATGCAGCA
GTGCGCCACATGGTGGAGACAGACTTGCAGAAAGTAGTAGGCGAGGAAAC
GCCAAAGAAGAGGGCGTTGATCCGCTTGGAGGAAGCGAAAGGCAAGGGAG
TTTTGTCGTGGTTGACAACGCAAGGGTTGTCAGCAGATGAAAGAATGCTG
CCTGATCTATATCGAGAGTCAATCGGTCGTGTACTGGGGAGTCACGATCG
AGCAGACTGCAACACAGGCAAACTTTGTGGTGCAGGTGCATTGTTACCAT
GCAAGGACCGCTTGAGCCGAGCCCACTCCCTCGTCTGCACCAAGACCGGC
GCCTCAACCTTCCTCCATAACAGGATGGTTCGAGTGGTCCTCAAGACACT
GCGCGAGTGCCATATGCCCATCGCCGTTGAGGATTCTTCCCCTTTTACCA
CAGGCACTGGTAGGGGAAAGGGGCCATACAAGATGGATTTGGTAATCCCC
CCAGGATTACACNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_106:184712..187485+

>EsuBft1180_4a-0001 ID=EsuBft1180_4a-0001|Name=EsuBft1180_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2568bp|location=Sequence derived from alignment at Scaffold_106:184712..187485+ (Ectocarpus subulatus male Bft15b)
ATGAACAGGGTATCCCGATTTAACCGCTTTGCAAATGGTGATCTGAGTGA
ACCTATCGCCTGGCTCATGATGTACGAGAAGAATCGTCGACTTCAGTATT
ATGCGGATACTGAAGACAATCGCCAAAGAAGAGCCACAAGACTTGCGCAC
GAAAGCGGAGGCATCACTAAAGCTGCCAGTGCCTTAATTTCCCCAGCACC
TTCACCGCGCAACAACGACACGCTGGAGCATCTTCGCAACCTACACCCTA
ACGAAGATCCTGACGATATTGCTACTGCGTGGGATTCCAGCATCAAAGCT
GCGGGAGATCGTATAAAAACGCACAAGATCGACTCCGTTGCCGAAGCTGA
TGAACCATTCGAAATCAAGTTCATCAAGCAGACGGTAAAGAAAGCCAACC
CTCAGAGTGCTCCGGGGCCTGATGGTCTTCGTTTTTCGTATCTCCAAGCT
GGTGGGATGAGTGATTTTTTTACTGAAACCTTGGCGGACTTCAGCTTTAA
AGTCTTCTACTACGGAGACGAGCTTCCGGATTTCTTTTGGAACCTCCACA
CCAGTGCCAACCTTTCAGCGCTGGGAGAGAAAAAACGGCCGATTGCAGTT
GGAGGGGTTTTGCGTCGCATCATCAGCGGCAGCTTCTGCCGCCAGTACAA
GGGAGGAATTGCGAACATCTTCGAAGCAGCAAATCAGTTCGGAGGTGGTG
TTCCAGGAGGAGTTGAGATAGTGGCTTCCACAGCAGCCCTCAGCCACCAG
CAAGGCAGCACCATTCTCTCCTTTGATGGGAAAAACGCTTACAACAGCAT
GCGCAGATCTTCCATCTTGCCAGCAGTGGCCACTCATACGCCACACTTGG
TGAAGTACTTCGGGAACATCTACGCTCGAACCAAGGCGAAACTTCTGTTC
AAAATGGAAGATGGTTCGATCGAGGTTGTTCTTTCACAGCGCGGAGTTCA
ACAAGGCTGCAATTTGGGAGGGTTTGGCTTCTGTGTAGGACTTCTTGATA
TCATGAAAGAGTTCAACAACAAGCCACCAGTGCCAGGAGTCAAACTCATC
GGATACGTCGACGACCTCCAAGCACATCTTCCACCAGGTTTGGCTAGGAA
CATGCAGGCCATATCCACTGTAACGAATTGGATTCAGGAACGTCTCTCCC
AAAAAGGCATTGAGCTCAGTCTCCCGAAATCCAAAGTGCTTTTCCCGGAA
GGTCTTTGCATGTCCTCTTTGACAAACGACGAACAGCAACAATTGACGAA
AATTGGTCTGTCAGTTACTGAAGGTGGCATGCCAGTTGTCGGGATCCCAG
TAGGAACAGAGGAGTTCCAGAGGAATTTCGTTTCCAAAATCGCCCGTGGT
GACCCGGCGGAATTGATACTCCGCCTAGCAACGCTTGACGACCCTCAAGC
CAGCTATCAACTGCTGCGTTTATCTGGTGTGCCACGTTTGTTCCATCTGC
TGAGGACGATTGCACCGTCTATCACCAACTCTGCCGCAAAAATACATGAC
AACATGATGATGTGGGCAATGAGTAAGATCGTCCTTGGCAAGATGGCCGA
CAGCATGAGAATACCAACGGTCAAAGAGGTACGCGCAGACCCGACGAAGA
GCGAGGAGGTAGATTTCTTCAAAGGGACAGCTCGGGCGCAGGTGCACCTA
CCCATGCGAGAAGGAGGACTAGGAATCACGAGCAATGTTCTCATTCGAGA
ATCGGCTTTTGTGGCAGGGCAAGCGCTGGTGTTCTCCAAGTCAGTGCAAG
CATCGACAGGATACACAGTTGAGCAATGTCTACCCCGGCTTGCCCAGCTA
CCGACAGGATTGGCTCTGATTGACTCGCTGAAGAAGCTAGAGGAAATCAT
CACCAAAGACAAGCTTGAAAAAGCTGTTGGGCAGTCATGGGCTAAACTTG
CCACAAGTGATGAGTTAACCCCCGCCCTCAAAGGAGTTTACTTGTTGGAA
GCAGGGAAGGCGGGAAAACCCCGTGAAGATGGAAACCCTGACGTAGAACA
TCAACCACCGTCTACCTTCAGCCGAAATGAATTTGGTCAACACTACCAAG
TCTTTGGAGCCCAAGCTCTCCTTTCGAAACCTCTTCATGCAGCAGTGCGC
CACATGGTGGAGACAGACTTGCAGAAAGTAGTAGGCGAGGAAACGCCAAA
GAAGAGGGCGTTGATCCGCTTGGAGGAAGCGAAAGGCAAGGGAGTTTTGT
CGTGGTTGACAACGCAAGGGTTGTCAGCAGATGAAAGAATGCTGCCTGAT
CTATATCGAGAGTCAATCGGTCGTGTACTGGGGAGTCACGATCGAGCAGA
CTGCAACACAGGCAAACTTTGTGGTGCAGGTGCATTGTTACCATGCAAGG
ACCGCTTGAGCCGAGCCCACTCCCTCGTCTGCACCAAGACCGGCGCCTCA
ACCTTCCTCCATAACAGGATGGTTCGAGTGGTCCTCAAGACACTGCGCGA
GTGCCATATGCCCATCGCCGTTGAGGATTCTTCCCCTTTTACCACAGGCA
CTGGTAGGGGAAAGGGGCCATACAAGATGGATTTGGTAATCCCCCCAGGA
TTACACNNNNNNNNNNNN