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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FGX4 |
| ProteomeId | EsuBft1009_5 |
| Protein domains | IPR006689 |
| Protein domains | IPR005225 |
| Protein domains | IPR027417 |
| Protein domains | IPR006687 |
| Protein domains | IPR024156 |
| Protein domains | PTHR11711 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | adp-ribosylation factor os:vigna unguiculata gn:arf pe:2 sv:3 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 470 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.34e-86 |
| EggNOG OGs | COG1100@1|root,KOG0070@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | Arf1 |
| KEGG ko | ko:K07937,ko:K07977 |
| KEGG Pathway | ko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134 |
| Description | GTP binding |
| COG category | BDLTU |
| BRITE | ko00000,ko00001,ko04031,ko04131,ko04147 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
| GO | 0010267 |
| GO | 0004571 |
| GO | 0009616 |
| GO | 0006306 |
| GO | 0006007 |
| GO | 0006886 |
| GO | 0005525 |
| GO | 0006346 |
| GO | 0009733 |
| GO | 0003700 |
| GO | 0005507 |
| GO | 0005829 |
| GO | 0016004 |
| GO | 0005774 |
| GO | 0009506 |
| GO | 0005215 |
| GO | 0003677 |
| GO | 0055085 |
| GO | 0005515 |
| GO | 0016192 |
| GO | 0006499 |
| GO | 0007267 |
| GO | 0046686 |
| GO | 0007264 |
| GO | 0006471 |
| GO | 0035196 |
| GO | 0010150 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1009_5a-0001 ID=EsuBft1009_5a-0001|Name=EsuBft1009_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=470bp|location=Sequence derived from alignment at Scaffold_106:147113..148880+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCGGAACCATGGGACTCGCATTCTCCCGACTGTGGGAGCGTATGTTCGGC
AAGAAGGAGATGCGTATACTGATGGTGGGTCTGGACGCGGCCGGTAAGAC
GACCATCCTGTACAAGCTCAAGCTCGGAGAGGTGGTGACAACTATCCCCA
CCATCGGGTTCAACGTGGAGACTGTAGAATACAAAAACATTAGCTTCACC
GTTTGGGACGTCGGAGGGCAGGACAAGATCAGGCCGCTGTGGAGGCACTA
CTACCAGAACACGCAGGGGCTGATCTTTGTCGTGGACTCCAACGACAGAG
ACCGCGTCGATGCCGCACGGGACGAACTCCACCGCATGCTCAACGAGGAC
GAACTGCGCGAGTCCATCCTTCTCGTGTTCGCTAACAAGCAGGTGAGCAT
TGTGTACCGGGGTAGGCATGTGCATCTGCCCACGTACAGCGCCGTGCTCG
TCGTCGGCGCGCTTTGCTGA back to topprotein sequence of EsuBft1009_5a-0001 >EsuBft1009_5 ID=EsuBft1009_5|Name=EsuBft1009_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=153bp
MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIG
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRV
DAARDELHRMLNEDELRESILLVFANKQVSIVYRGRHVHLPTYSAVLVVG
ALC back to topmRNA from alignment at Scaffold_106:147113..148880+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1009_5a-0001 ID=EsuBft1009_5a-0001|Name=EsuBft1009_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1768bp|location=Sequence derived from alignment at Scaffold_106:147113..148880+ (Ectocarpus subulatus male Bft15b)
GCGGAACCATGGGACTCGCATTCTCCCGACTGTGGGAGCGTATGTTCGGC
AAGAAGGAGATGCGTATACTGATGGTACGAGATAGGGAGAGGCAGTAAGG
GTGTTGGGTTGTGTCCAGCGGCAGCTCGCCACTGCTGCTGTACTACCTGG
TTTTTTTGTTCTTGATCACGCCCTCCATCTGCTGCCCCCATTCCCCGATC
AGAAACCGCCCCTGATTTTGACTTGTACTGCTTTTCGATGTGGATTTCTC
CTTTCGCAATAGCATGTCGTGCACGATACGGGGATGCGACACTTAGTGGG
GCCGCAGATGACACGCTCGTCTCGTCTGAACTCTCCCCGAGGAAACACAG
CATGTACAGCGTCAATGCTTACGATGTATCAACAGAAGTGTTACGCAATC
AATATGTGCAGGACAGCAGCACGTAATATCTCATCGAACCTTTTCTGACC
CCCGTTGACGCAACCATCTCTTCCCAGGCCAGAGGGCAAGAACGCAATAG
AACAGAAGACCTTACATGTGCCTCTTGCCACGCGCGTGTCCGTTTCTCAA
ATATTTTGTTCGAATTATCATCCGCCGAAATGAAGGGCTGATCATCCGCA
CCGTTTTTCATCGACCTATCGTGGAGATTCCTTAATTTTCGGCATAATGT
TTTTCGGGAGACCCCCCCCCCCCCTTGGTCGAAACCTCCCGTCACTGCAG
ATGGGATCTACTACTATCTACCCAGCGGGCAGGTTACAACCGGCTTGTTG
TTGACAGGCGGGGGTTGCTGAGTGTCGTACGTTCTTCGCCGCTGCTGTGG
CGTAATAGTCCGCCCGCATTCATCTCCGGATCAGACGGCTGCTGCTGTTT
TTTTGTTGCTTGACCGCGGTGCTGTCTGTCCCCTTGCGTGGCACGAAAGG
TGGGTCTGGACGCGGCCGGTAAGACGACCATCCTGTACAAGCTCAAGCTC
GGAGAGGTGGTGACAACTATCCCCACCATCGGGTTCAACGTGGAGACTGT
AGAATACAAAAACATTAGCTTCACCGGTAAGCAGCATGCGTTTCCCAAGG
GTAGGGTGTGATACTGGGCAGAGGGGACATATCCGCCCGTTCCCCAACAG
GCACTTAATTTGGACGAACTTACGACCGTGAGTCCCCTAAAACGAAACCG
AAAATCATGAATTCGCACATGTATCTCTGTACATGGGTTCGGAGGCACAC
GCCGCGTTCAACTGGAGAATATATAAACGTTGGACGCAGCAGTGTTGGTG
GGAGACGCGAGCATCGACTCGAAATGTTGCGCTCTGTAAGGCAGGCACCG
GCAGTTTCCTCCATCTAGCGACTCTGGCACGAACACATAGACTTTGCTTT
TTGAGTTTGTGTCTTGAAGCCACACACAAAACCTCAAGATCATTTTAGAT
ACGTACAAGGGGAACCGGTGGCGAAAGCTTTGTTAGTGCGCATACATGCA
CGACGCCGCACAAACACTAACGTTGTTTTCGCCCGTTCGTCGACGACAGT
TTGGGACGTCGGAGGGCAGGACAAGATCAGGCCGCTGTGGAGGCACTACT
ACCAGAACACGCAGGGGCTGATCTTTGTCGTGGACTCCAACGACAGAGAC
CGCGTCGATGCCGCACGGGACGAACTCCACCGCATGCTCAACGAGGACGA
ACTGCGCGAGTCCATCCTTCTCGTGTTCGCTAACAAGCAGGTGAGCATTG
TGTACCGGGGTAGGCATGTGCATCTGCCCACGTACAGCGCCGTGCTCGTC
GTCGGCGCGCTTTGCTGA back to topCoding sequence (CDS) from alignment at Scaffold_106:147113..148880+ >EsuBft1009_5a-0001 ID=EsuBft1009_5a-0001|Name=EsuBft1009_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=462bp|location=Sequence derived from alignment at Scaffold_106:147113..148880+ (Ectocarpus subulatus male Bft15b)
ATGGGACTCGCATTCTCCCGACTGTGGGAGCGTATGTTCGGCAAGAAGGA
GATGCGTATACTGATGGTGGGTCTGGACGCGGCCGGTAAGACGACCATCC
TGTACAAGCTCAAGCTCGGAGAGGTGGTGACAACTATCCCCACCATCGGG
TTCAACGTGGAGACTGTAGAATACAAAAACATTAGCTTCACCGTTTGGGA
CGTCGGAGGGCAGGACAAGATCAGGCCGCTGTGGAGGCACTACTACCAGA
ACACGCAGGGGCTGATCTTTGTCGTGGACTCCAACGACAGAGACCGCGTC
GATGCCGCACGGGACGAACTCCACCGCATGCTCAACGAGGACGAACTGCG
CGAGTCCATCCTTCTCGTGTTCGCTAACAAGCAGGTGAGCATTGTGTACC
GGGGTAGGCATGTGCATCTGCCCACGTACAGCGCCGTGCTCGTCGTCGGC
GCGCTTTGCTGA back to top
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