EsuBft1009_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1009_6a-0001
Unique Name	EsuBft1009_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:143433..146142 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1009_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	271
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1009_6a	EsuBft1009_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 143433..146142 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1009_6a-0001-exon	EsuBft1009_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 143433..146142 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1009_6a-0001-exon	agat-five_prime_utr-47	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_106 143433..143512 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1009_6a-0001-cds	EsuBft1009_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 143513..143719 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1009_6a-0001-exon	agat-three_prime_utr-81	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 143720..146142 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1009_6a-0001	EsuBft1009_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 143513..143719 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:143433..146142+
coding sequence from alignment at Scaffold_106:143433..146142+

spliced messenger RNA

>EsuBft1009_6a-0001 ID=EsuBft1009_6a-0001|Name=EsuBft1009_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2710bp|location=Sequence derived from alignment at Scaffold_106:143433..146142+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGCGGTGCAGATAGCAGAGACAGTAGATCCCGCAGATATACAGTCGTGT
TTGTATTCGTGAGCCAGTGCAAAAGGCGATATGAGGGACTTCATGGCGAA
ACACCTAAGGACACCCAGCGCGTGTCACTCGTACTCACACAGTAACAGCG
GCTTCTACTCGTGGATGTCCATCGCATCCACCAGACGCGCTGCGCCGTTT
CTTGATTTGCGAACTGCCTTCTGGAAGGATACCACGTCGTGCAACACCCC
GAGAGCCTTTTTCAGGCGGAATACCGGTACACCCTAAGAAGACCTCTCGT
CCATAGCCGTCGTTTTTTTTAAAGCAATTAGGTGAACGGGCCGAAGCCGG
GGTAACATGAGAAAAGTTGTGAAGGGGGTAAGCGCAGGCGATGTGTGCCG
TGGGCAAAGATATACTCCCTTGATACCAGCGGGACGGAGAGTCGCAGGTT
CTTGGTAACGCATGCCCTCTAGGAGGCAATTATTTTTGCTCATGTTCTTG
CCATCAAGTCCAGCAGTTGCGCGGCGCCTGTCCGACCTCTTCTCTCCTAT
TATCTTGCAGTTGGTGCCTGACAATGTGGGTGTTATCCCCGATGCTTGTG
CGAAGCGATGTCATCGATGCAATGGGATTGTGAAGGGACCGCGTCGTACC
TTCTCATGGTATCATATTTCTTGTTACGTGGACACTCACAACCTTACATG
TGCAAACTGGCGCCATGCTTCAAAGTGCACTCCCTCTCCTCTCGTCGTTT
GATCACTTGTGGCATTTACGCCCGCAACAACAGGACGTAAACACCACAAT
TCGAGCTGCTCCAACAGTGCTCCACCACAAGGCTGAGCTCCACTGGAATG
TCTTCGGTTCGCAACCTCGAATGTTCAGAGGCACCATCACCCGGGACCGC
CTCCCCGATTCACCATTGCCACCGTGGCTGTTCCGACCTGTTGTCGGCTC
ATTTATAGGATCAGGTGTCGGTGATGACACCGCCGACACATCGTACAGGC
ACCGACAAACAGGAACGAGCGAGCAAGCGAGTCCACCCCCCACGAGAAGA
ACGGATCGCTACTAACGACTTTATAGCCAGCAATTCTGTTTTGAGACTCT
ACCATGGTAGTCGGACACATTTGCAGTAGGGTTCCGATGGTTTGCAGCCA
GTGTGTCGAGTGAGCTGGTCGTGTCTTTCTGGTTCGTCGTTACGTGTTAC
GGCTGGACGATGTGGCTGGAAATGGGTAGACTGGACAGAACCACCTAGCC
TGGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCA
CCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGAC
AGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCACCTAG
CCTGGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAAC
CACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGG
ACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCACCT
AGCCTGGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGA
ACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCT
GGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCAC
CTAGCCTGGACAGAACCACCAAGTGTTTTTATCGCAGTGAGCGCGCACGC
CGATGCCGCTTCTTGAGTTGGATCCCTCGCGGAATTGGGGGCGTTGTATC
GGGCTACGCTGGAGCGTGCACAATCACTTCACCCCACCCAGTTTCAACTG
AATGCCTATCGGACGGACACCCGTTTTGTAGGCGTGTTCGATGTGACGCA
CGCGGGAAAGTAGGACACGACCCGTCGCCCCACCTGGTTGTGCTCCGTCA
TAGGGAAGACACATGCAGGGTGTTGGACATTGACAGGGGGTGAAACATGG
CAATTGGCAGGAGTTACGGAAGCACCCACACAAGTCAAGATGATGCACAC
GCGAGCACATTTGTATTTATATTTCCTAACAATGGTTCTGTTCGTGCGGT
CGGTGCACATTCACCAATTGTGTGGGTGCACCCACTGCTGCTGTCGTTGG
TGCTCGACTCGCACAATTCGCACAATTCGCACAGCAGTGGTGGAAGTTCG
AATCTAAGACTGGTTGATTCTGAGCACAACAAACTCTTCACAGGTTTGGT
ATCCAATTTGGTGGATAGTAAAACGTATGGTGGGTTTCAATACGCCAGTC
TTGCAGAGAACCGGAAATGCCACTGCTGTCTGTCCTTGGGACTATATCTA
GATGTGTGTTTTCCAAACCGGTAGTCAAACAATCCGCACAACGATCGTTC
GTATGCATACAGATCTACTCCTGTGCAGCAGCTGCTGTACAATCATAGTG
TAACCATCGAGCGTCACGAGGGGACACAATCAATAGCACGTACATCTGGA
CCTGGATGAATTCACCCCTCTTTTGTCCGTTATCGTCGATGCCGCGTGAC
GACAGGAGCGGCACAGCTGTTCATACCTATGGATCTAAAATGTTGTGGCT
AACAGGTGATTTGCACCGCCTTTCCAACCGGAGTTCAGTGGCGGAAGCGT
GTTTTTCTTTTTTTTTTCCCAGAGCTTGTTCTGCGAAGCCCCTTTTTTTC
TGGCCAATAG

protein sequence of EsuBft1009_6a-0001

>EsuBft1009_6 ID=EsuBft1009_6|Name=EsuBft1009_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=68bp
MRDFMAKHLRTPSACHSYSHSNSGFYSWMSIASTRRAAPFLDLRTAFWKD
TTSCNTPRAFFRRNTGTP

mRNA from alignment at Scaffold_106:143433..146142+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1009_6a-0001 ID=EsuBft1009_6a-0001|Name=EsuBft1009_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2710bp|location=Sequence derived from alignment at Scaffold_106:143433..146142+ (Ectocarpus subulatus male Bft15b)
GTGCGGTGCAGATAGCAGAGACAGTAGATCCCGCAGATATACAGTCGTGT
TTGTATTCGTGAGCCAGTGCAAAAGGCGATATGAGGGACTTCATGGCGAA
ACACCTAAGGACACCCAGCGCGTGTCACTCGTACTCACACAGTAACAGCG
GCTTCTACTCGTGGATGTCCATCGCATCCACCAGACGCGCTGCGCCGTTT
CTTGATTTGCGAACTGCCTTCTGGAAGGATACCACGTCGTGCAACACCCC
GAGAGCCTTTTTCAGGCGGAATACCGGTACACCCTAAGAAGACCTCTCGT
CCATAGCCGTCGTTTTTTTTAAAGCAATTAGGTGAACGGGCCGAAGCCGG
GGTAACATGAGAAAAGTTGTGAAGGGGGTAAGCGCAGGCGATGTGTGCCG
TGGGCAAAGATATACTCCCTTGATACCAGCGGGACGGAGAGTCGCAGGTT
CTTGGTAACGCATGCCCTCTAGGAGGCAATTATTTTTGCTCATGTTCTTG
CCATCAAGTCCAGCAGTTGCGCGGCGCCTGTCCGACCTCTTCTCTCCTAT
TATCTTGCAGTTGGTGCCTGACAATGTGGGTGTTATCCCCGATGCTTGTG
CGAAGCGATGTCATCGATGCAATGGGATTGTGAAGGGACCGCGTCGTACC
TTCTCATGGTATCATATTTCTTGTTACGTGGACACTCACAACCTTACATG
TGCAAACTGGCGCCATGCTTCAAAGTGCACTCCCTCTCCTCTCGTCGTTT
GATCACTTGTGGCATTTACGCCCGCAACAACAGGACGTAAACACCACAAT
TCGAGCTGCTCCAACAGTGCTCCACCACAAGGCTGAGCTCCACTGGAATG
TCTTCGGTTCGCAACCTCGAATGTTCAGAGGCACCATCACCCGGGACCGC
CTCCCCGATTCACCATTGCCACCGTGGCTGTTCCGACCTGTTGTCGGCTC
ATTTATAGGATCAGGTGTCGGTGATGACACCGCCGACACATCGTACAGGC
ACCGACAAACAGGAACGAGCGAGCAAGCGAGTCCACCCCCCACGAGAAGA
ACGGATCGCTACTAACGACTTTATAGCCAGCAATTCTGTTTTGAGACTCT
ACCATGGTAGTCGGACACATTTGCAGTAGGGTTCCGATGGTTTGCAGCCA
GTGTGTCGAGTGAGCTGGTCGTGTCTTTCTGGTTCGTCGTTACGTGTTAC
GGCTGGACGATGTGGCTGGAAATGGGTAGACTGGACAGAACCACCTAGCC
TGGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCA
CCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGAC
AGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCACCTAG
CCTGGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAAC
CACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGG
ACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCACCT
AGCCTGGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGA
ACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCT
GGACAGAACCACCTAGCCTGGACAGAACCACCTAGCCTGGACAGAACCAC
CTAGCCTGGACAGAACCACCAAGTGTTTTTATCGCAGTGAGCGCGCACGC
CGATGCCGCTTCTTGAGTTGGATCCCTCGCGGAATTGGGGGCGTTGTATC
GGGCTACGCTGGAGCGTGCACAATCACTTCACCCCACCCAGTTTCAACTG
AATGCCTATCGGACGGACACCCGTTTTGTAGGCGTGTTCGATGTGACGCA
CGCGGGAAAGTAGGACACGACCCGTCGCCCCACCTGGTTGTGCTCCGTCA
TAGGGAAGACACATGCAGGGTGTTGGACATTGACAGGGGGTGAAACATGG
CAATTGGCAGGAGTTACGGAAGCACCCACACAAGTCAAGATGATGCACAC
GCGAGCACATTTGTATTTATATTTCCTAACAATGGTTCTGTTCGTGCGGT
CGGTGCACATTCACCAATTGTGTGGGTGCACCCACTGCTGCTGTCGTTGG
TGCTCGACTCGCACAATTCGCACAATTCGCACAGCAGTGGTGGAAGTTCG
AATCTAAGACTGGTTGATTCTGAGCACAACAAACTCTTCACAGGTTTGGT
ATCCAATTTGGTGGATAGTAAAACGTATGGTGGGTTTCAATACGCCAGTC
TTGCAGAGAACCGGAAATGCCACTGCTGTCTGTCCTTGGGACTATATCTA
GATGTGTGTTTTCCAAACCGGTAGTCAAACAATCCGCACAACGATCGTTC
GTATGCATACAGATCTACTCCTGTGCAGCAGCTGCTGTACAATCATAGTG
TAACCATCGAGCGTCACGAGGGGACACAATCAATAGCACGTACATCTGGA
CCTGGATGAATTCACCCCTCTTTTGTCCGTTATCGTCGATGCCGCGTGAC
GACAGGAGCGGCACAGCTGTTCATACCTATGGATCTAAAATGTTGTGGCT
AACAGGTGATTTGCACCGCCTTTCCAACCGGAGTTCAGTGGCGGAAGCGT
GTTTTTCTTTTTTTTTTCCCAGAGCTTGTTCTGCGAAGCCCCTTTTTTTC
TGGCCAATAG

Coding sequence (CDS) from alignment at Scaffold_106:143433..146142+

>EsuBft1009_6a-0001 ID=EsuBft1009_6a-0001|Name=EsuBft1009_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=207bp|location=Sequence derived from alignment at Scaffold_106:143433..146142+ (Ectocarpus subulatus male Bft15b)
ATGAGGGACTTCATGGCGAAACACCTAAGGACACCCAGCGCGTGTCACTC
GTACTCACACAGTAACAGCGGCTTCTACTCGTGGATGTCCATCGCATCCA
CCAGACGCGCTGCGCCGTTTCTTGATTTGCGAACTGCCTTCTGGAAGGAT
ACCACGTCGTGCAACACCCCGAGAGCCTTTTTCAGGCGGAATACCGGTAC
ACCCTAA