Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1009_9 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 9 |
| Length | 141 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-11_001020.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1009_9a-0001 ID=EsuBft1009_9a-0001|Name=EsuBft1009_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1417bp|location=Sequence derived from alignment at Scaffold_106:117449..121972- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AACGTGATGGCCAATGATAATGGAGCCATACCTGGAGAGAGCGAGAGCAC
GGATGGCCTGATAGACCAGTACCGCAGGCACCGGGACGAGATCTCCAAGA
TTCCATTCTACGCAGATTCAATAATGAAAATGCTAAAGGACATTCGGCGG
ACCGTCAACGCCTCTGCGAAGCTCCAGCCAGGGAGCAATGCCTTCACACA
GTTCCTCGATGAGTGGTGGGCATCTGTGGTGGAGTTTCTCGAGCAGTCTC
CCATCGTCGATGCCGAGAGAAACGCGCGAGAGGTCATGCAGACTCTGAAA
AAGCTCAAGGGGAAGCAAGAAGAGTTCAAAAAGCGAGAGATGTCCCGCCT
AATGAACAAACTCGAAGCTCAAGACAAGGCAACGCCTCCCATGACGCCCG
CCAGCGAAGCGGTAGTGATCCTGGACGATTCTGTCAACCCGGAAGACACC
GTACGGTGGAACGAGAAGGCTCGGCCTGACGATGAGGAAGGAAGCGTTCT
GGAAGGAGACACTGAACACGACTACGATGGGCACGACGAAGCTGTGGATG
AGCTGTCAGAGCTTGGGCACGGAGGCTTAGACGACATGAGTCAGTGGTCA
GAGTCTAGCCCTTCGCGAAGCGAGGCTTCACTGACGCCCCGTCGACAACT
TGCCGAGCGTGGGAGGGAGCGTGGCTTCACGACTAGTATGGCTACTATCC
CGGACAACACGGGGAACACGAGTGTTGCCAGCTGGGACGTGAGAAGTGAG
CCCACTCTGGGTACAGATGGCGGCACGGACCAGGATATCGCTGCAGCGTC
TGGTCTCCCAGAAGACGAGAGCGACGACGATGACGAGGAGGATGACGAGT
TCGAAGTGGCTGACAGTCTCGATCTGGGCGCAGTGGCACTTTGCGCGGTC
CAGACCGGGGCAGATGGTCAGCAAACGTATCAAGACACAGCACGCACCCC
CCAGGCCATGCGGCACCTGACGAACAAGCTTGGCGTCGAGCAGCAACGCT
TCTCAGCTGCTCTGGACTACTTCAGGCAAGAGCAGCGCACCATGGGGAGG
CGGCCGGTGATGCCTCCTCCACCTCCGAGTGCGTCTCGCTCCAAGACTCT
CGCAACCAGAGGGCGAGACACGCCACGAATCGGCGATATGCGGGGGAGGA
GAGTATCCCAAGCTGGCAACGGGAAAAACCAACGGCCAGGCCTGAGGGAT
GTAACGTTCAAGCAGACCAGCACAACCAGCAGTGCCGTGTATCGGTCGCA
CTCCCTGTACGTGTCGAGCACCTCGAGCACCTCTTCCACACGCATGCAAG
GGGCTGCCTCGGCGCGGAACAGGACCAACACCATCATCCGTTCCAACTCG
CAAAATCTTGACATCGGTCACCAGAGCTGAACAGCCGAGTCATGTATATG
TGGTGCTGGTTTTAAGA back to topprotein sequence of EsuBft1009_9a-0001 >EsuBft1009_9 ID=EsuBft1009_9|Name=EsuBft1009_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=457bp
MANDNGAIPGESESTDGLIDQYRRHRDEISKIPFYADSIMKMLKDIRRTV
NASAKLQPGSNAFTQFLDEWWASVVEFLEQSPIVDAERNAREVMQTLKKL
KGKQEEFKKREMSRLMNKLEAQDKATPPMTPASEAVVILDDSVNPEDTVR
WNEKARPDDEEGSVLEGDTEHDYDGHDEAVDELSELGHGGLDDMSQWSES
SPSRSEASLTPRRQLAERGRERGFTTSMATIPDNTGNTSVASWDVRSEPT
LGTDGGTDQDIAAASGLPEDESDDDDEEDDEFEVADSLDLGAVALCAVQT
GADGQQTYQDTARTPQAMRHLTNKLGVEQQRFSAALDYFRQEQRTMGRRP
VMPPPPPSASRSKTLATRGRDTPRIGDMRGRRVSQAGNGKNQRPGLRDVT
FKQTSTTSSAVYRSHSLYVSSTSSTSSTRMQGAASARNRTNTIIRSNSQN
LDIGHQS back to topmRNA from alignment at Scaffold_106:117449..121972- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1009_9a-0001 ID=EsuBft1009_9a-0001|Name=EsuBft1009_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4524bp|location=Sequence derived from alignment at Scaffold_106:117449..121972- (Ectocarpus subulatus male Bft15b)
AACGTGATGGCCAATGATAATGGAGCCATACCTGGAGAGAGCGAGAGCAC
GGATGGCCTGATAGACCAGTACCGCAGGTACGATTGCCATTCTGGCTGTA
TGGGAGACCGCTTCGACTACGTAGGGTGGCGATGTTGATGAAGCAAATGG
AAGCACAGCGGGGGGGTGTCGCATCCAAACGCTATCGTGTTCAACTAACG
TTCATGGGTACAGGATCACCGCGCCTCCCCCTCTTTCAGCGTGGGAATGA
GCCAACTTCGATTGCAAGCATATCCCTTAACGTGAGGTGATCTGAGCAAG
GCGACCCACATCACATGACGGCCATTGAACGCGACCGAAGCCAAGGCATC
TATCTGTAGCTTGTCTTGTAGGATTGTTTGGGAGAGGAGACAAGAGGGGA
ACACATGCCAAATGAGCCTTGGGCGTTGACGGGGTTTGGGATCTGGCTCC
GTGTTGTTGACGGGTATCAGGTAACGGCAATTACTATACAGTTACCCCTG
CAGAACTGGGATACAGAATTACGATGTCTAGATCCCTGTCCCGTGGATAA
GGCTGCGTCTCGGCGGTGGCGAATGTGTGGGTGTGGGTGTGGGTGAAGCA
CAGCGCAGTTTCTCGATGCTGTGGTATTCAACCACTACTGCAATTGTGGG
AAATCTGTGGGTGTTCCTTAAGCGGTCTCCCTGGATACGCGGTCTCCCTG
GATGCACCTGTATGTCTTCTTCAGCCCCCTACGAAGTATCACACAAATCG
TGTCCACCGTCGGCTATGCTGTCGTGACAGACATGTCTAGACTATACGTT
CAAATCTTAATGCAGCATGTTTGACCATCCTTGTCTCGACCACAAGTGCA
GCCGTCTCTTCATGTAGGTCGCGCTCGGTGTATGCATGTGTTGGATCGGT
TAGCACTGCCCAAGTTGAGACCGCAGTACTTGCAGTCGCTAATGACAGTG
GGAGTAGCTCTCGTTGCTCTTTTGGAGAATAACGGACACTTTCGCAACTG
CCGTCAACTTAGCCCTATTTATGCGTAGCCTCCTGCAGGCCACCTGTGGC
GGTCAAACTCCAACGTCACGGCATGTGTGTGGGGGCCACAACTGAATGCA
ACACGTTTGATTGCACACCTTTGAATTGGACCCAACAAACACCGTTGCTT
TGACAGGCACCGGGACGAGATCTCCAAGATTCCATTCTACGCAGATTCAA
TAATGAAAATGCTAAAGGACATTCGGCGGACCGTCAACGCCTCTGCGAAG
CTCCAGCCAGGGAGCAATGCCTTCACACAGTTCCTCGATGAGGTACAGTA
ATGGTTACATGCTGGTTCGTTCGACTCATAATCCAAGAGCCCATGGTATC
GGGCATGCGCTTGTTCCTCTTTGTCCCTACTCGTTACTCTCACTACGTAT
TGTTAGATCAAGCGTGGCCAGATTGTTTCCTGGCACAGGTATCGCAGACA
TCACTTATTTGGTTTAGGTTGATGGGTGCCTGTTTTTCATTTCTCGCTGA
ACTTCTTCCAATCTCCGGGCTTGACTACTGCGTCCAAACCACCCGCCCGT
TTCTGGTTGTAGCATTTTTATTTTCAGACAACGCATGGTCCACCCTCAAT
TCCAAAGCAACAATGCTTGGGTGTGCAGGTATAAGTATGTAGGCATTGCG
ACCTGTACGGCAGAGCGCTGTCTGATACTTGTATCGAGCTTCCGTTTCAT
GCACCCACACTTCTAGTCTTCAGTAGGAACTTATCTAACCCGACTGCAAC
GTTTTCGTATCGAAACTCACATGTAATACAAGCGACACTAACATTGATGG
TGATGGGTCCGTTTACCAACACGAGATTTCTCCCAGCCGTGGCTTTGTAT
TAATTGATATGTCCTGCCCTGTCTATTTGTTACCTTGGCTGTATTGGTGC
AGTGGTGGGCATCTGTGGTGGAGTTTCTCGAGCAGTCTCCCATCGTCGAT
GCCGAGAGAAACGCGCGAGAGGTCATGCAGGTAGGTCTGCATGTCTGCAT
AATACACATGCTTATCATGTCAAACTTTCGACATCGTTGGAGTTTGGCGT
CGCGGTTCAATACCCCCCCCAAGACGCACCGCATAGGATGGTGGCTTTGT
CGCGCCTTCTTCAACCACGACAGGGTGTGGGCGCGGCCAAGGCGTAGCAG
GAAAGAGGCGACGTTCACCCTTTGACATGCTTGCAGTATGCTTGCAGTAT
GCTTGATGTCGCGTTTTTACCAGACATATTCATTTCAGACCCCCTCCGAA
GCGAAGATAGCGGTTGGGTACATAAACGAAAGCGAAAGAGGACCCTCTCG
GCCCATACATGTCGCGCAGTAATGCCCACCTTGGAAGAACGTGATTAGAA
ACTACGAGGAAACTACAGCCCCGTGCGGTGGCTTGGGATACGTGGTCAAT
GGCCCAGTTAGTGGGACAAACTTCGAGTACGCACGCCACGACTGCTTCTC
TCCTTTTCATCGTCGTCCGGTCATTTACCCATGATGCATATGCTTGATTG
CGTGGCCACAAAATGTTTGCTGCGGGGGACGCTAGACACGTGCATACATC
ACATCAATTGCCCCTGCTGTTTCTTCTGGCCGTCACTCATCTACCAGACT
CTGAAAAAGCTCAAGGGGAAGCAAGAAGAGTTCAAAAAGCGAGAGATGTC
CCGCCTAATGAACAAACTCGAAGCTCAAGACAAGGCAACGCCTCCCATGA
CGCCCGCCAGCGAAGCGGTAGTGATCCTGGACGATTCTGTCAACCCGGAA
GACACCGTACGGTAAGACGTGCAGCTGTCGGTCAGCCAGTGAAGGTATCT
CACCAGTGTTGGCGCAAAGGTTTGCATTCGCACTGCACAGCAGGGCCTTG
GGTTTGCAAATGTTATCTAGTTGTCTTGAGTATCCCTCTCTTCCTCCCTG
CCTGTTTACAGGTGGAACGAGAAGGCTCGGCCTGACGATGAGGAAGGAAG
CGTTCTGGAAGGAGACACTGAACACGACTACGATGGGCACGACGAAGCTG
TGGATGAGCTGTCAGAGCTTGGGCACGGAGGCTTAGACGACATGAGTCAG
TGGTCAGAGTCTAGCCCTTCGCGAAGCGAGGCTTCACTGACGCCCCGTCG
ACAACTTGCCGAGCGTGGGAGGGAGCGTGGCTTCACGACTAGTATGGCTA
CTATCCCGGACAACACGGGGAACACGAGTGTTGCCAGCTGGGACGTGAGA
AGTGAGCCCACTCTGGGTACAGATGGCGGCACGGACCAGGATATCGCTGC
AGCGTCTGGTCTCCCAGAAGACGAGAGCGACGACGATGACGAGGAGGATG
ACGAGTTCGAAGTGGCTGACAGTCTCGATCTGGGCGCAGTGGCACTTTGC
GTGAGTTGGTGGGGGCTGTTTTTGTATCGGCATCTTGAACCGAAACCTTT
ACTCCTCTTCAGCTCATGTCTATCCACGGGTCTTGACTGGCTCTCACCAT
GGGTGATGATGATTATTGCAGGCGGTCCAGACCGGGGCAGATGGTCAGCA
AACGTATCAAGACACAGCACGCACCCCCCAGGCCATGCGGCACCTGACGA
ACAAGCTTGGCGTCGAGCAGGTTAGTCGAACGAACAGGGCAAATCATCCC
CAATTGACTACACGGGTGGGCCGTGTAATACAGTGACATTTTTTGTGGTG
TGGGGAGAGTATCCACCCTGCCGGTGGGTGGGCGGCCCCCCGATTTTATG
TTTTCTCGTAAGTTCTTAGCCGGTGCTCAACTCCACTGACATCCACCTGA
TTATCGTTTGTTGCACTTTCTACGTCGATAAGGGCAGACGTATCTTTTCA
CCGGTTTTGGAGACTGACCTTGATCGCACGCGCCACACCCGACACTTTAC
AGCAACGCTTCTCAGCTGCTCTGGACTACTTCAGGCAAGAGCAGCGCACC
ATGGGGAGGCGGCCGGTAAGTGATACAAGTAGCAACGATATCTGCAATGT
TTCCCGCCATAGTAAATATCGTGTATATGATCAATCGTCGTGTCATGTTG
CTGTCACCACTCATTCAGGTGATGCCTCCTCCACCTCCGAGTGCGTCTCG
CTCCAAGACTCTCGCAACCAGAGGGCGAGACACGCCACGAATCGGCGATA
TGCGGGGGAGGAGAGTATCCCAAGCTGGCAACGGGAAAAACCAACGGCCA
GGCCTGAGGTTAGTGGGTCCGGTGTGTTGTTCTTAGACGGGTGGTCTTTG
ATTCGCAAGGGCTGCTCGAATCATCTGATACCCATGTCCCGATTCACGTG
TGACTCGCTCTTGATCACTTCATTCCCTGCATACGGTATCCCTCACGCTC
CAGGGATGTAACGTTCAAGCAGACCAGCACAACCAGCAGTGCCGTGTATC
GGTCGCACTCCCTGTACGTGTCGAGCACCTCGAGCACCTCTTCCACACGC
ATGCAAGGGGCTGCCTCGGCGCGGAACAGGACCAACACCATCATCCGTTC
CAACTCGCAAAATCTTGACATCGGTCACCAGAGCTGAACAGCCGAGTCAT
GTATATGTGGTGCTGGTTTTAAGA back to topCoding sequence (CDS) from alignment at Scaffold_106:117449..121972- >EsuBft1009_9a-0001 ID=EsuBft1009_9a-0001|Name=EsuBft1009_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1374bp|location=Sequence derived from alignment at Scaffold_106:117449..121972- (Ectocarpus subulatus male Bft15b)
ATGGCCAATGATAATGGAGCCATACCTGGAGAGAGCGAGAGCACGGATGG
CCTGATAGACCAGTACCGCAGGCACCGGGACGAGATCTCCAAGATTCCAT
TCTACGCAGATTCAATAATGAAAATGCTAAAGGACATTCGGCGGACCGTC
AACGCCTCTGCGAAGCTCCAGCCAGGGAGCAATGCCTTCACACAGTTCCT
CGATGAGTGGTGGGCATCTGTGGTGGAGTTTCTCGAGCAGTCTCCCATCG
TCGATGCCGAGAGAAACGCGCGAGAGGTCATGCAGACTCTGAAAAAGCTC
AAGGGGAAGCAAGAAGAGTTCAAAAAGCGAGAGATGTCCCGCCTAATGAA
CAAACTCGAAGCTCAAGACAAGGCAACGCCTCCCATGACGCCCGCCAGCG
AAGCGGTAGTGATCCTGGACGATTCTGTCAACCCGGAAGACACCGTACGG
TGGAACGAGAAGGCTCGGCCTGACGATGAGGAAGGAAGCGTTCTGGAAGG
AGACACTGAACACGACTACGATGGGCACGACGAAGCTGTGGATGAGCTGT
CAGAGCTTGGGCACGGAGGCTTAGACGACATGAGTCAGTGGTCAGAGTCT
AGCCCTTCGCGAAGCGAGGCTTCACTGACGCCCCGTCGACAACTTGCCGA
GCGTGGGAGGGAGCGTGGCTTCACGACTAGTATGGCTACTATCCCGGACA
ACACGGGGAACACGAGTGTTGCCAGCTGGGACGTGAGAAGTGAGCCCACT
CTGGGTACAGATGGCGGCACGGACCAGGATATCGCTGCAGCGTCTGGTCT
CCCAGAAGACGAGAGCGACGACGATGACGAGGAGGATGACGAGTTCGAAG
TGGCTGACAGTCTCGATCTGGGCGCAGTGGCACTTTGCGCGGTCCAGACC
GGGGCAGATGGTCAGCAAACGTATCAAGACACAGCACGCACCCCCCAGGC
CATGCGGCACCTGACGAACAAGCTTGGCGTCGAGCAGCAACGCTTCTCAG
CTGCTCTGGACTACTTCAGGCAAGAGCAGCGCACCATGGGGAGGCGGCCG
GTGATGCCTCCTCCACCTCCGAGTGCGTCTCGCTCCAAGACTCTCGCAAC
CAGAGGGCGAGACACGCCACGAATCGGCGATATGCGGGGGAGGAGAGTAT
CCCAAGCTGGCAACGGGAAAAACCAACGGCCAGGCCTGAGGGATGTAACG
TTCAAGCAGACCAGCACAACCAGCAGTGCCGTGTATCGGTCGCACTCCCT
GTACGTGTCGAGCACCTCGAGCACCTCTTCCACACGCATGCAAGGGGCTG
CCTCGGCGCGGAACAGGACCAACACCATCATCCGTTCCAACTCGCAAAAT
CTTGACATCGGTCACCAGAGCTGA back to top
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