EsuBft1009_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1009_9a-0001
Unique NameEsuBft1009_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:117449..121972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1009_9
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon9
Length141
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_001020.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_9aEsuBft1009_9aEctocarpus subulatus male Bft15bgeneScaffold_106 117449..121972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_9a-0001EsuBft1009_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 117486..121966 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_9a-0001-exonagat-exon-87412Ectocarpus subulatus male Bft15bexonScaffold_106 117449..117669 -
EsuBft1009_9a-0001-exonagat-exon-87414Ectocarpus subulatus male Bft15bexonScaffold_106 117815..117954 -
EsuBft1009_9a-0001-exonagat-exon-87408Ectocarpus subulatus male Bft15bexonScaffold_106 118058..118120 -
EsuBft1009_9a-0001-exonagat-exon-87409Ectocarpus subulatus male Bft15bexonScaffold_106 118403..118501 -
EsuBft1009_9a-0001-exonagat-exon-87415Ectocarpus subulatus male Bft15bexonScaffold_106 118623..119061 -
EsuBft1009_9a-0001-exonEsuBft1009_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 119212..119375 -
EsuBft1009_9a-0001-exonagat-exon-87413Ectocarpus subulatus male Bft15bexonScaffold_106 119993..120070 -
EsuBft1009_9a-0001-exonagat-exon-87410Ectocarpus subulatus male Bft15bexonScaffold_106 120681..120816 -
EsuBft1009_9a-0001-exonagat-exon-87411Ectocarpus subulatus male Bft15bexonScaffold_106 121896..121972 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_9a-0001-exonagat-three_prime_utr-87Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_106 117449..117485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_9a-0001-cdsEsuBft1009_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 117486..117669 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_9a-0001-exonagat-five_prime_utr-50Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_106 121967..121972 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1009_9a-0001 ID=EsuBft1009_9a-0001|Name=EsuBft1009_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1417bp|location=Sequence derived from alignment at Scaffold_106:117449..121972- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AACGTGATGGCCAATGATAATGGAGCCATACCTGGAGAGAGCGAGAGCAC
GGATGGCCTGATAGACCAGTACCGCAGGCACCGGGACGAGATCTCCAAGA
TTCCATTCTACGCAGATTCAATAATGAAAATGCTAAAGGACATTCGGCGG
ACCGTCAACGCCTCTGCGAAGCTCCAGCCAGGGAGCAATGCCTTCACACA
GTTCCTCGATGAGTGGTGGGCATCTGTGGTGGAGTTTCTCGAGCAGTCTC
CCATCGTCGATGCCGAGAGAAACGCGCGAGAGGTCATGCAGACTCTGAAA
AAGCTCAAGGGGAAGCAAGAAGAGTTCAAAAAGCGAGAGATGTCCCGCCT
AATGAACAAACTCGAAGCTCAAGACAAGGCAACGCCTCCCATGACGCCCG
CCAGCGAAGCGGTAGTGATCCTGGACGATTCTGTCAACCCGGAAGACACC
GTACGGTGGAACGAGAAGGCTCGGCCTGACGATGAGGAAGGAAGCGTTCT
GGAAGGAGACACTGAACACGACTACGATGGGCACGACGAAGCTGTGGATG
AGCTGTCAGAGCTTGGGCACGGAGGCTTAGACGACATGAGTCAGTGGTCA
GAGTCTAGCCCTTCGCGAAGCGAGGCTTCACTGACGCCCCGTCGACAACT
TGCCGAGCGTGGGAGGGAGCGTGGCTTCACGACTAGTATGGCTACTATCC
CGGACAACACGGGGAACACGAGTGTTGCCAGCTGGGACGTGAGAAGTGAG
CCCACTCTGGGTACAGATGGCGGCACGGACCAGGATATCGCTGCAGCGTC
TGGTCTCCCAGAAGACGAGAGCGACGACGATGACGAGGAGGATGACGAGT
TCGAAGTGGCTGACAGTCTCGATCTGGGCGCAGTGGCACTTTGCGCGGTC
CAGACCGGGGCAGATGGTCAGCAAACGTATCAAGACACAGCACGCACCCC
CCAGGCCATGCGGCACCTGACGAACAAGCTTGGCGTCGAGCAGCAACGCT
TCTCAGCTGCTCTGGACTACTTCAGGCAAGAGCAGCGCACCATGGGGAGG
CGGCCGGTGATGCCTCCTCCACCTCCGAGTGCGTCTCGCTCCAAGACTCT
CGCAACCAGAGGGCGAGACACGCCACGAATCGGCGATATGCGGGGGAGGA
GAGTATCCCAAGCTGGCAACGGGAAAAACCAACGGCCAGGCCTGAGGGAT
GTAACGTTCAAGCAGACCAGCACAACCAGCAGTGCCGTGTATCGGTCGCA
CTCCCTGTACGTGTCGAGCACCTCGAGCACCTCTTCCACACGCATGCAAG
GGGCTGCCTCGGCGCGGAACAGGACCAACACCATCATCCGTTCCAACTCG
CAAAATCTTGACATCGGTCACCAGAGCTGAACAGCCGAGTCATGTATATG
TGGTGCTGGTTTTAAGA
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protein sequence of EsuBft1009_9a-0001

>EsuBft1009_9 ID=EsuBft1009_9|Name=EsuBft1009_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=457bp
MANDNGAIPGESESTDGLIDQYRRHRDEISKIPFYADSIMKMLKDIRRTV
NASAKLQPGSNAFTQFLDEWWASVVEFLEQSPIVDAERNAREVMQTLKKL
KGKQEEFKKREMSRLMNKLEAQDKATPPMTPASEAVVILDDSVNPEDTVR
WNEKARPDDEEGSVLEGDTEHDYDGHDEAVDELSELGHGGLDDMSQWSES
SPSRSEASLTPRRQLAERGRERGFTTSMATIPDNTGNTSVASWDVRSEPT
LGTDGGTDQDIAAASGLPEDESDDDDEEDDEFEVADSLDLGAVALCAVQT
GADGQQTYQDTARTPQAMRHLTNKLGVEQQRFSAALDYFRQEQRTMGRRP
VMPPPPPSASRSKTLATRGRDTPRIGDMRGRRVSQAGNGKNQRPGLRDVT
FKQTSTTSSAVYRSHSLYVSSTSSTSSTRMQGAASARNRTNTIIRSNSQN
LDIGHQS
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mRNA from alignment at Scaffold_106:117449..121972-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1009_9a-0001 ID=EsuBft1009_9a-0001|Name=EsuBft1009_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4524bp|location=Sequence derived from alignment at Scaffold_106:117449..121972- (Ectocarpus subulatus male Bft15b)
AACGTGATGGCCAATGATAATGGAGCCATACCTGGAGAGAGCGAGAGCAC
GGATGGCCTGATAGACCAGTACCGCAGGTACGATTGCCATTCTGGCTGTA
TGGGAGACCGCTTCGACTACGTAGGGTGGCGATGTTGATGAAGCAAATGG
AAGCACAGCGGGGGGGTGTCGCATCCAAACGCTATCGTGTTCAACTAACG
TTCATGGGTACAGGATCACCGCGCCTCCCCCTCTTTCAGCGTGGGAATGA
GCCAACTTCGATTGCAAGCATATCCCTTAACGTGAGGTGATCTGAGCAAG
GCGACCCACATCACATGACGGCCATTGAACGCGACCGAAGCCAAGGCATC
TATCTGTAGCTTGTCTTGTAGGATTGTTTGGGAGAGGAGACAAGAGGGGA
ACACATGCCAAATGAGCCTTGGGCGTTGACGGGGTTTGGGATCTGGCTCC
GTGTTGTTGACGGGTATCAGGTAACGGCAATTACTATACAGTTACCCCTG
CAGAACTGGGATACAGAATTACGATGTCTAGATCCCTGTCCCGTGGATAA
GGCTGCGTCTCGGCGGTGGCGAATGTGTGGGTGTGGGTGTGGGTGAAGCA
CAGCGCAGTTTCTCGATGCTGTGGTATTCAACCACTACTGCAATTGTGGG
AAATCTGTGGGTGTTCCTTAAGCGGTCTCCCTGGATACGCGGTCTCCCTG
GATGCACCTGTATGTCTTCTTCAGCCCCCTACGAAGTATCACACAAATCG
TGTCCACCGTCGGCTATGCTGTCGTGACAGACATGTCTAGACTATACGTT
CAAATCTTAATGCAGCATGTTTGACCATCCTTGTCTCGACCACAAGTGCA
GCCGTCTCTTCATGTAGGTCGCGCTCGGTGTATGCATGTGTTGGATCGGT
TAGCACTGCCCAAGTTGAGACCGCAGTACTTGCAGTCGCTAATGACAGTG
GGAGTAGCTCTCGTTGCTCTTTTGGAGAATAACGGACACTTTCGCAACTG
CCGTCAACTTAGCCCTATTTATGCGTAGCCTCCTGCAGGCCACCTGTGGC
GGTCAAACTCCAACGTCACGGCATGTGTGTGGGGGCCACAACTGAATGCA
ACACGTTTGATTGCACACCTTTGAATTGGACCCAACAAACACCGTTGCTT
TGACAGGCACCGGGACGAGATCTCCAAGATTCCATTCTACGCAGATTCAA
TAATGAAAATGCTAAAGGACATTCGGCGGACCGTCAACGCCTCTGCGAAG
CTCCAGCCAGGGAGCAATGCCTTCACACAGTTCCTCGATGAGGTACAGTA
ATGGTTACATGCTGGTTCGTTCGACTCATAATCCAAGAGCCCATGGTATC
GGGCATGCGCTTGTTCCTCTTTGTCCCTACTCGTTACTCTCACTACGTAT
TGTTAGATCAAGCGTGGCCAGATTGTTTCCTGGCACAGGTATCGCAGACA
TCACTTATTTGGTTTAGGTTGATGGGTGCCTGTTTTTCATTTCTCGCTGA
ACTTCTTCCAATCTCCGGGCTTGACTACTGCGTCCAAACCACCCGCCCGT
TTCTGGTTGTAGCATTTTTATTTTCAGACAACGCATGGTCCACCCTCAAT
TCCAAAGCAACAATGCTTGGGTGTGCAGGTATAAGTATGTAGGCATTGCG
ACCTGTACGGCAGAGCGCTGTCTGATACTTGTATCGAGCTTCCGTTTCAT
GCACCCACACTTCTAGTCTTCAGTAGGAACTTATCTAACCCGACTGCAAC
GTTTTCGTATCGAAACTCACATGTAATACAAGCGACACTAACATTGATGG
TGATGGGTCCGTTTACCAACACGAGATTTCTCCCAGCCGTGGCTTTGTAT
TAATTGATATGTCCTGCCCTGTCTATTTGTTACCTTGGCTGTATTGGTGC
AGTGGTGGGCATCTGTGGTGGAGTTTCTCGAGCAGTCTCCCATCGTCGAT
GCCGAGAGAAACGCGCGAGAGGTCATGCAGGTAGGTCTGCATGTCTGCAT
AATACACATGCTTATCATGTCAAACTTTCGACATCGTTGGAGTTTGGCGT
CGCGGTTCAATACCCCCCCCAAGACGCACCGCATAGGATGGTGGCTTTGT
CGCGCCTTCTTCAACCACGACAGGGTGTGGGCGCGGCCAAGGCGTAGCAG
GAAAGAGGCGACGTTCACCCTTTGACATGCTTGCAGTATGCTTGCAGTAT
GCTTGATGTCGCGTTTTTACCAGACATATTCATTTCAGACCCCCTCCGAA
GCGAAGATAGCGGTTGGGTACATAAACGAAAGCGAAAGAGGACCCTCTCG
GCCCATACATGTCGCGCAGTAATGCCCACCTTGGAAGAACGTGATTAGAA
ACTACGAGGAAACTACAGCCCCGTGCGGTGGCTTGGGATACGTGGTCAAT
GGCCCAGTTAGTGGGACAAACTTCGAGTACGCACGCCACGACTGCTTCTC
TCCTTTTCATCGTCGTCCGGTCATTTACCCATGATGCATATGCTTGATTG
CGTGGCCACAAAATGTTTGCTGCGGGGGACGCTAGACACGTGCATACATC
ACATCAATTGCCCCTGCTGTTTCTTCTGGCCGTCACTCATCTACCAGACT
CTGAAAAAGCTCAAGGGGAAGCAAGAAGAGTTCAAAAAGCGAGAGATGTC
CCGCCTAATGAACAAACTCGAAGCTCAAGACAAGGCAACGCCTCCCATGA
CGCCCGCCAGCGAAGCGGTAGTGATCCTGGACGATTCTGTCAACCCGGAA
GACACCGTACGGTAAGACGTGCAGCTGTCGGTCAGCCAGTGAAGGTATCT
CACCAGTGTTGGCGCAAAGGTTTGCATTCGCACTGCACAGCAGGGCCTTG
GGTTTGCAAATGTTATCTAGTTGTCTTGAGTATCCCTCTCTTCCTCCCTG
CCTGTTTACAGGTGGAACGAGAAGGCTCGGCCTGACGATGAGGAAGGAAG
CGTTCTGGAAGGAGACACTGAACACGACTACGATGGGCACGACGAAGCTG
TGGATGAGCTGTCAGAGCTTGGGCACGGAGGCTTAGACGACATGAGTCAG
TGGTCAGAGTCTAGCCCTTCGCGAAGCGAGGCTTCACTGACGCCCCGTCG
ACAACTTGCCGAGCGTGGGAGGGAGCGTGGCTTCACGACTAGTATGGCTA
CTATCCCGGACAACACGGGGAACACGAGTGTTGCCAGCTGGGACGTGAGA
AGTGAGCCCACTCTGGGTACAGATGGCGGCACGGACCAGGATATCGCTGC
AGCGTCTGGTCTCCCAGAAGACGAGAGCGACGACGATGACGAGGAGGATG
ACGAGTTCGAAGTGGCTGACAGTCTCGATCTGGGCGCAGTGGCACTTTGC
GTGAGTTGGTGGGGGCTGTTTTTGTATCGGCATCTTGAACCGAAACCTTT
ACTCCTCTTCAGCTCATGTCTATCCACGGGTCTTGACTGGCTCTCACCAT
GGGTGATGATGATTATTGCAGGCGGTCCAGACCGGGGCAGATGGTCAGCA
AACGTATCAAGACACAGCACGCACCCCCCAGGCCATGCGGCACCTGACGA
ACAAGCTTGGCGTCGAGCAGGTTAGTCGAACGAACAGGGCAAATCATCCC
CAATTGACTACACGGGTGGGCCGTGTAATACAGTGACATTTTTTGTGGTG
TGGGGAGAGTATCCACCCTGCCGGTGGGTGGGCGGCCCCCCGATTTTATG
TTTTCTCGTAAGTTCTTAGCCGGTGCTCAACTCCACTGACATCCACCTGA
TTATCGTTTGTTGCACTTTCTACGTCGATAAGGGCAGACGTATCTTTTCA
CCGGTTTTGGAGACTGACCTTGATCGCACGCGCCACACCCGACACTTTAC
AGCAACGCTTCTCAGCTGCTCTGGACTACTTCAGGCAAGAGCAGCGCACC
ATGGGGAGGCGGCCGGTAAGTGATACAAGTAGCAACGATATCTGCAATGT
TTCCCGCCATAGTAAATATCGTGTATATGATCAATCGTCGTGTCATGTTG
CTGTCACCACTCATTCAGGTGATGCCTCCTCCACCTCCGAGTGCGTCTCG
CTCCAAGACTCTCGCAACCAGAGGGCGAGACACGCCACGAATCGGCGATA
TGCGGGGGAGGAGAGTATCCCAAGCTGGCAACGGGAAAAACCAACGGCCA
GGCCTGAGGTTAGTGGGTCCGGTGTGTTGTTCTTAGACGGGTGGTCTTTG
ATTCGCAAGGGCTGCTCGAATCATCTGATACCCATGTCCCGATTCACGTG
TGACTCGCTCTTGATCACTTCATTCCCTGCATACGGTATCCCTCACGCTC
CAGGGATGTAACGTTCAAGCAGACCAGCACAACCAGCAGTGCCGTGTATC
GGTCGCACTCCCTGTACGTGTCGAGCACCTCGAGCACCTCTTCCACACGC
ATGCAAGGGGCTGCCTCGGCGCGGAACAGGACCAACACCATCATCCGTTC
CAACTCGCAAAATCTTGACATCGGTCACCAGAGCTGAACAGCCGAGTCAT
GTATATGTGGTGCTGGTTTTAAGA
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Coding sequence (CDS) from alignment at Scaffold_106:117449..121972-

>EsuBft1009_9a-0001 ID=EsuBft1009_9a-0001|Name=EsuBft1009_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1374bp|location=Sequence derived from alignment at Scaffold_106:117449..121972- (Ectocarpus subulatus male Bft15b)
ATGGCCAATGATAATGGAGCCATACCTGGAGAGAGCGAGAGCACGGATGG
CCTGATAGACCAGTACCGCAGGCACCGGGACGAGATCTCCAAGATTCCAT
TCTACGCAGATTCAATAATGAAAATGCTAAAGGACATTCGGCGGACCGTC
AACGCCTCTGCGAAGCTCCAGCCAGGGAGCAATGCCTTCACACAGTTCCT
CGATGAGTGGTGGGCATCTGTGGTGGAGTTTCTCGAGCAGTCTCCCATCG
TCGATGCCGAGAGAAACGCGCGAGAGGTCATGCAGACTCTGAAAAAGCTC
AAGGGGAAGCAAGAAGAGTTCAAAAAGCGAGAGATGTCCCGCCTAATGAA
CAAACTCGAAGCTCAAGACAAGGCAACGCCTCCCATGACGCCCGCCAGCG
AAGCGGTAGTGATCCTGGACGATTCTGTCAACCCGGAAGACACCGTACGG
TGGAACGAGAAGGCTCGGCCTGACGATGAGGAAGGAAGCGTTCTGGAAGG
AGACACTGAACACGACTACGATGGGCACGACGAAGCTGTGGATGAGCTGT
CAGAGCTTGGGCACGGAGGCTTAGACGACATGAGTCAGTGGTCAGAGTCT
AGCCCTTCGCGAAGCGAGGCTTCACTGACGCCCCGTCGACAACTTGCCGA
GCGTGGGAGGGAGCGTGGCTTCACGACTAGTATGGCTACTATCCCGGACA
ACACGGGGAACACGAGTGTTGCCAGCTGGGACGTGAGAAGTGAGCCCACT
CTGGGTACAGATGGCGGCACGGACCAGGATATCGCTGCAGCGTCTGGTCT
CCCAGAAGACGAGAGCGACGACGATGACGAGGAGGATGACGAGTTCGAAG
TGGCTGACAGTCTCGATCTGGGCGCAGTGGCACTTTGCGCGGTCCAGACC
GGGGCAGATGGTCAGCAAACGTATCAAGACACAGCACGCACCCCCCAGGC
CATGCGGCACCTGACGAACAAGCTTGGCGTCGAGCAGCAACGCTTCTCAG
CTGCTCTGGACTACTTCAGGCAAGAGCAGCGCACCATGGGGAGGCGGCCG
GTGATGCCTCCTCCACCTCCGAGTGCGTCTCGCTCCAAGACTCTCGCAAC
CAGAGGGCGAGACACGCCACGAATCGGCGATATGCGGGGGAGGAGAGTAT
CCCAAGCTGGCAACGGGAAAAACCAACGGCCAGGCCTGAGGGATGTAACG
TTCAAGCAGACCAGCACAACCAGCAGTGCCGTGTATCGGTCGCACTCCCT
GTACGTGTCGAGCACCTCGAGCACCTCTTCCACACGCATGCAAGGGGCTG
CCTCGGCGCGGAACAGGACCAACACCATCATCCGTTCCAACTCGCAAAAT
CTTGACATCGGTCACCAGAGCTGA
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