EsuBft3559_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3559_2a-0001
Unique NameEsuBft3559_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_211contigScaffold_211:36633..39855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRN1
ProteomeIdEsuBft3559_2
Protein domainsIPR009009
Protein domainsPTHR31836
Protein domainsIPR014733
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length233
Hectar predicted targeting categoryother localisation
Evalue2.91e-195
EggNOG OGs2D16Q@1|root,2SGXE@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K20628
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3559_2aEsuBft3559_2aEctocarpus subulatus male Bft15bgeneScaffold_211 36633..39855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3559_2a-0001EsuBft3559_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_211 38104..39855 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3559_2a-0001-exonagat-exon-71192Ectocarpus subulatus male Bft15bexonScaffold_211 36633..38422 -
EsuBft3559_2a-0001-exonagat-exon-71193Ectocarpus subulatus male Bft15bexonScaffold_211 38671..38797 -
EsuBft3559_2a-0001-exonEsuBft3559_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_211 39049..39189 -
EsuBft3559_2a-0001-exonagat-exon-71194Ectocarpus subulatus male Bft15bexonScaffold_211 39456..39665 -
EsuBft3559_2a-0001-exonagat-exon-71195Ectocarpus subulatus male Bft15bexonScaffold_211 39792..39855 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3559_2a-0001-exonagat-three_prime_utr-13758Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_211 36633..38103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3559_2a-0001-cdsEsuBft3559_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_211 38104..38422 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3559_2a-0001 ID=EsuBft3559_2a-0001|Name=EsuBft3559_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2332bp|location=Sequence derived from alignment at Scaffold_211:36633..39855- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTTGACAAAGAACATCAACAACTGCAAAACCTGTCTGACGAAAA
CTTCAGCGCGCAGCGCGATACATGCACCAACGGCATCGAAGGCATCGACG
GCAACGGCGTGGTATGTTGTCCGCTGGGTTGCGGGCGGTGTGCGGGGGAA
GGGTGCACTGCATTTGGCTCTGAGAACGGCCTCGGCGCCGATTCCTGCTG
CGGCAATGCTATCAAGGCTTCCGGGAGACTGTGCAGCGAAACCGGATCAG
CCCCTTGCATTATCGACGAAGAAGGGCCCTCGCCGACGCCGAGCTTCAGT
GGCGGACAATATGGAGAGGAATATAGCGGAGAAGCAACATACTATGGTCA
CACGACGGCAGGCATGTGCTCCTTCTTCGACGATGTCCCGGAAATGTACG
ATGGCATGATTCCAGTCGCCCTCAACGCGGAGCAGTACGGCGATTCGCTC
ATGTGTGGTGCATGTGTCGAGGGAACTGCCAGCGGCAGCGGCTCCAGCAA
CAACCCGATCCCATCCACGTTCAAGGCTTTCATCACGGACAAATGCCCCG
AGTGCCAGAAGGGAGACCTCGACTTCTCCATGTCCGGCGACGGGAGGTGG
GACATCGAGTGGAAGTTTGTCGCGTGCCCTGGAGAGGAAACATCCTTCGT
TTCTCCTTCCGCTAACCCATACTACTGGAAGGTGCAGCCACGCGGTACCA
CGACTCCGGTGGTGAGCCTCACGGTTGACGGGCAGTCGGCCATGAGGACC
ACCGACAACCACTTCGAGGTACACAACGACGGGGCCGCGTGGTCGGGCGC
GCAGACGGTGGTGACGACGACCGTGTCAGGCGTCACGGAGACCGCAGAAG
TGTCGTTTTAACGAGAACGTGTATAATTTTGCTGAGTTGGTCTAGGCAGC
ACGTCGTGGGATTTGATAGCACCACGAGGATTATATTTGTCGGGGTTTTT
GTTGTGTTTCGAGATACCCGTGTGAGCATACATGGATTTGTGTCTCGATG
GGTTTTTAAGGAGTATAAGGTCTCCAATTGCACAAAATGTTACGTAGTTT
AGGCGGAGTATGAGGGGCTAGAGAAAATGAAGAGGGGGGCAAACCATTTA
TTGTTGTGTATTCGGTCTTTGTTTTAACTTCTTGACTCACAACATGAATT
TTACTTCTGGATGGTTGCTGGTTGCTGTTGATGTCGAACAGCCCTAGACT
GGCAGGTGCTTTCTCTTGGACCTGTTCGCCATGAGGGCTAATATGTGTTC
GGGCGTTCGCGCTCTACACCCTTTTTACTGCCCATCACGCCCCTCTCGGT
GCTCTTCACCGGCCAGTGAGATTGTGTGGGTAGGTTGGTCGTTTTCTGTT
GTCGTCGTTTTTGTTGCAGTCGATGAATTGCTCTGTTTCATGTTCTGACC
CCAGCTTGTTGAATTCGGAGGAAGGGAAGGCCGACCAGAAGCTGGATTTT
GGATATTCTTGTGTAACCACTCGTGGAGACTATCTTCCGTGGCGTTGGTG
GTTTGCCCATTTTACCGGAAGTGGAGCTCGTTGACTCCTGGGTGCTCCGT
AGGTAGGTTGTTGCCAGCAGCGATGATTCGATTCCGTCGTACCAATGCGT
TAGGATAATGCTACAGTGCAGGGAATACTTTGTAGGGTGTGTAGAAAGTG
GCATCTCGCCTAGAGAACTTTCGAAAGGGTTCTTGTACATGAATATCGGT
GGCGAGAAATAGCAAGGAATGGATCTAGAAGGGAGTGACCCTCTTTCAAA
GTGCGAGGCTGCTCTAAAAGTGTGAGGCTGTTCCATGTTGGTCTGGTGGT
CGGTATTATGCCGCAATACATCTAGCGCGATTTCGGGGAGGCTTGCCGAG
GTAGGCATAAGAAGATTAGGAAAATTTACACGCCAATGGAGAAAACATCA
CACCAACTTAGGATAGCGTTTGTACCGGGCGCCTGTAATCAGTGAACGTC
TGATTGTTTCTGCAGTTTTCTATATGCAGGTTGCAACTCCGGTACCTCAT
TCGTGTGTTACAAATATTTTTGTATACCCTAGGGTATTCTTGTTCGATTT
TCTTAGCCAAGGCTGTAGTTGTTGTCCAATACACGCTCTGTCGCCTCATG
GACCCCAGGTTCATGCACACGGTGATTTTGTTGCTCTGGATGCTGAATAT
ATTCTGTGTGTGATTTCGTTGGCTGTTGACCTCGGGGGGGTGTAGGTGAG
TACAGGAAGAATTTTGTGTGATGTGTGCTACAATGCTGAGCCTGCTGATA
ATGTGTAACTATTCCAACATGCTTGCGTAATTGTAGGCTTTTCGTTCGGA
ATCCGTGTACATATTGCCAAAATCGAGGCATT
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protein sequence of EsuBft3559_2a-0001

>EsuBft3559_2 ID=EsuBft3559_2|Name=EsuBft3559_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=286bp
MSVDKEHQQLQNLSDENFSAQRDTCTNGIEGIDGNGVVCCPLGCGRCAGE
GCTAFGSENGLGADSCCGNAIKASGRLCSETGSAPCIIDEEGPSPTPSFS
GGQYGEEYSGEATYYGHTTAGMCSFFDDVPEMYDGMIPVALNAEQYGDSL
MCGACVEGTASGSGSSNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRW
DIEWKFVACPGEETSFVSPSANPYYWKVQPRGTTTPVVSLTVDGQSAMRT
TDNHFEVHNDGAAWSGAQTVVTTTVSGVTETAEVSF
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mRNA from alignment at Scaffold_211:36633..39855-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3559_2a-0001 ID=EsuBft3559_2a-0001|Name=EsuBft3559_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3223bp|location=Sequence derived from alignment at Scaffold_211:36633..39855- (Ectocarpus subulatus male Bft15b)
ATGAGCGTTGACAAAGAACATCAACAACTGCAAAACCTGTCTGACGAAAA
CTTCAGCGCGCAGCGTAAAGTGTCGTAGGGAGTTGATGTTTCACGCAGAT
TTTCGATTCAACCCGCGCCGCTGGGTTGTTCGTTGACGTCTCTTTATGAT
ATTGAATTTTGTTCCGTTTCCTCTCTTTATGTGAATGCAGGCGATACATG
CACCAACGGCATCGAAGGCATCGACGGCAACGGCGTGGTATGTTGTCCGC
TGGGTTGCGGGCGGTGTGCGGGGGAAGGGTGCACTGCATTTGGCTCTGAG
AACGGCCTCGGCGCCGATTCCTGCTGCGGCAATGCTATCAAGGCTTCCGG
GAGACTGTGCAGCGAAACCGGATCAGCCCCTTGCATTATCGACGAAGAAG
GTCAGCGACGGTAAACTCAAGACTCTCGACTTTAGCCCACCAGTAGACAC
CACCGACCCAAGTTTTTTCGCCCATCATACTCGTCCAATCATGAACAACC
GATAGCGGAAGCCTGGTACGGTCGTATCATGGCTCTGTCCGTTCGTTGCG
AACGTTTGGTCAACTGCGCTGGCGTCGCTGGAATTTTGAATGCCAGACAC
CGGCTCGCCGTGGGTGAATATGCTAACTAGTTTTTGTCATGTTTCCCTTC
TCCATAAAATGTGCAGGGCCCTCGCCGACGCCGAGCTTCAGTGGCGGACA
ATATGGAGAGGAATATAGCGGAGAAGCAACATACTATGGTCACACGACGG
CAGGCATGTGCTCCTTCTTCGACGATGTCCCGGAAATGTACGATGGCATG
ATTCCAGGTGTGTACCATTTGCATCCGTTCTGTTTCAGTTGTTATTTTTT
TGAAACAACAGTAAGCGTGTCAAGACGAGCGAGAGATTGTCCGGCTTTCG
TTACACTATCAAATCCCTTCTCAACACCTTTGGCTGCCATATTCTTATTC
GTCGCCGGACTGAATATAAAATTTCCCCTCGTGCTCCCGTTCTTTCCCCT
CGTGCCCCCTGCCTTCCCCCAACGATTAAACCATCCTGTTCTGCTGCACG
GGTTCCAGTCGCCCTCAACGCGGAGCAGTACGGCGATTCGCTCATGTGTG
GTGCATGTGTCGAGGGAACTGCCAGCGGCAGCGGCTCCAGCAACAACCCG
ATCCCATCCACGTTCAAGGCTTTCATCACGGACAAGTAAGCGAGAAGAGG
GCACGAACAACTACTTGTAACTGTAGCGAGTCGTCGCTTGTTCCTCCAGC
AAACACCATGACTGGTGATGGCGCGTGTCCTGTGTTGCACTTTTCGGTCT
TCCCTCTCGGATATTGCTACAAGGGACAAAATGAAAAACATTTAGTCTAG
AAACCAGGGATGGATATGTCTTTCGCCAAGTAGACAAGAGAGATTGATTG
ATTGTTCCCGTCCACTCTCTGGCTCTGCTTCAGATGCCCCGAGTGCCAGA
AGGGAGACCTCGACTTCTCCATGTCCGGCGACGGGAGGTGGGACATCGAG
TGGAAGTTTGTCGCGTGCCCTGGAGAGGAAACATCCTTCGTTTCTCCTTC
CGCTAACCCATACTACTGGAAGGTGCAGCCACGCGGTACCACGACTCCGG
TGGTGAGCCTCACGGTTGACGGGCAGTCGGCCATGAGGACCACCGACAAC
CACTTCGAGGTACACAACGACGGGGCCGCGTGGTCGGGCGCGCAGACGGT
GGTGACGACGACCGTGTCAGGCGTCACGGAGACCGCAGAAGTGTCGTTTT
AACGAGAACGTGTATAATTTTGCTGAGTTGGTCTAGGCAGCACGTCGTGG
GATTTGATAGCACCACGAGGATTATATTTGTCGGGGTTTTTGTTGTGTTT
CGAGATACCCGTGTGAGCATACATGGATTTGTGTCTCGATGGGTTTTTAA
GGAGTATAAGGTCTCCAATTGCACAAAATGTTACGTAGTTTAGGCGGAGT
ATGAGGGGCTAGAGAAAATGAAGAGGGGGGCAAACCATTTATTGTTGTGT
ATTCGGTCTTTGTTTTAACTTCTTGACTCACAACATGAATTTTACTTCTG
GATGGTTGCTGGTTGCTGTTGATGTCGAACAGCCCTAGACTGGCAGGTGC
TTTCTCTTGGACCTGTTCGCCATGAGGGCTAATATGTGTTCGGGCGTTCG
CGCTCTACACCCTTTTTACTGCCCATCACGCCCCTCTCGGTGCTCTTCAC
CGGCCAGTGAGATTGTGTGGGTAGGTTGGTCGTTTTCTGTTGTCGTCGTT
TTTGTTGCAGTCGATGAATTGCTCTGTTTCATGTTCTGACCCCAGCTTGT
TGAATTCGGAGGAAGGGAAGGCCGACCAGAAGCTGGATTTTGGATATTCT
TGTGTAACCACTCGTGGAGACTATCTTCCGTGGCGTTGGTGGTTTGCCCA
TTTTACCGGAAGTGGAGCTCGTTGACTCCTGGGTGCTCCGTAGGTAGGTT
GTTGCCAGCAGCGATGATTCGATTCCGTCGTACCAATGCGTTAGGATAAT
GCTACAGTGCAGGGAATACTTTGTAGGGTGTGTAGAAAGTGGCATCTCGC
CTAGAGAACTTTCGAAAGGGTTCTTGTACATGAATATCGGTGGCGAGAAA
TAGCAAGGAATGGATCTAGAAGGGAGTGACCCTCTTTCAAAGTGCGAGGC
TGCTCTAAAAGTGTGAGGCTGTTCCATGTTGGTCTGGTGGTCGGTATTAT
GCCGCAATACATCTAGCGCGATTTCGGGGAGGCTTGCCGAGGTAGGCATA
AGAAGATTAGGAAAATTTACACGCCAATGGAGAAAACATCACACCAACTT
AGGATAGCGTTTGTACCGGGCGCCTGTAATCAGTGAACGTCTGATTGTTT
CTGCAGTTTTCTATATGCAGGTTGCAACTCCGGTACCTCATTCGTGTGTT
ACAAATATTTTTGTATACCCTAGGGTATTCTTGTTCGATTTTCTTAGCCA
AGGCTGTAGTTGTTGTCCAATACACGCTCTGTCGCCTCATGGACCCCAGG
TTCATGCACACGGTGATTTTGTTGCTCTGGATGCTGAATATATTCTGTGT
GTGATTTCGTTGGCTGTTGACCTCGGGGGGGTGTAGGTGAGTACAGGAAG
AATTTTGTGTGATGTGTGCTACAATGCTGAGCCTGCTGATAATGTGTAAC
TATTCCAACATGCTTGCGTAATTGTAGGCTTTTCGTTCGGAATCCGTGTA
CATATTGCCAAAATCGAGGCATT
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Coding sequence (CDS) from alignment at Scaffold_211:36633..39855-

>EsuBft3559_2a-0001 ID=EsuBft3559_2a-0001|Name=EsuBft3559_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=861bp|location=Sequence derived from alignment at Scaffold_211:36633..39855- (Ectocarpus subulatus male Bft15b)
ATGAGCGTTGACAAAGAACATCAACAACTGCAAAACCTGTCTGACGAAAA
CTTCAGCGCGCAGCGCGATACATGCACCAACGGCATCGAAGGCATCGACG
GCAACGGCGTGGTATGTTGTCCGCTGGGTTGCGGGCGGTGTGCGGGGGAA
GGGTGCACTGCATTTGGCTCTGAGAACGGCCTCGGCGCCGATTCCTGCTG
CGGCAATGCTATCAAGGCTTCCGGGAGACTGTGCAGCGAAACCGGATCAG
CCCCTTGCATTATCGACGAAGAAGGGCCCTCGCCGACGCCGAGCTTCAGT
GGCGGACAATATGGAGAGGAATATAGCGGAGAAGCAACATACTATGGTCA
CACGACGGCAGGCATGTGCTCCTTCTTCGACGATGTCCCGGAAATGTACG
ATGGCATGATTCCAGTCGCCCTCAACGCGGAGCAGTACGGCGATTCGCTC
ATGTGTGGTGCATGTGTCGAGGGAACTGCCAGCGGCAGCGGCTCCAGCAA
CAACCCGATCCCATCCACGTTCAAGGCTTTCATCACGGACAAATGCCCCG
AGTGCCAGAAGGGAGACCTCGACTTCTCCATGTCCGGCGACGGGAGGTGG
GACATCGAGTGGAAGTTTGTCGCGTGCCCTGGAGAGGAAACATCCTTCGT
TTCTCCTTCCGCTAACCCATACTACTGGAAGGTGCAGCCACGCGGTACCA
CGACTCCGGTGGTGAGCCTCACGGTTGACGGGCAGTCGGCCATGAGGACC
ACCGACAACCACTTCGAGGTACACAACGACGGGGCCGCGTGGTCGGGCGC
GCAGACGGTGGTGACGACGACCGTGTCAGGCGTCACGGAGACCGCAGAAG
TGTCGTTTTAA
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