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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D7G244 |
| ProteomeId | EsuBft1205_3 |
| Protein domains | PTHR12469 |
| Protein domains | IPR005631 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | succinate dehydrogenase assembly factor mitochondrial os:dictyostelium discoideum gn:ddb [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1283 |
| Hectar predicted targeting category | mitochondrion |
| Evalue | 5.23e-139 |
| EggNOG OGs | COG2938@1|root,KOG3326@2759|Eukaryota |
| Ec32 ortholog description | Flavinator of succinate dehydrogenase |
| Ec32 ortholog | Ec-09_003830.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | SDHAF2 |
| KEGG ko | ko:K18168,ko:K20352 |
| KEGG TC | 9.B.188 |
| GOs | GO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007049,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010717,GO:0010719,GO:0015980,GO:0016043,GO:0016310,GO:0016311,GO:0016999,GO:0017144,GO:0018065,GO:0018293,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0022900,GO:0022904,GO:0023051,GO:0023057,GO:0030111,GO:0030154,GO:0030178,GO:0030435,GO:0030437,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0033108,GO:0034293,GO:0034552,GO:0034553,GO:0034622,GO:0034641,GO:0036211,GO:0042592,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043436,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045333,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0045944,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0051093,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051321,GO:0051704,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055086,GO:0055114,GO:0060255,GO:0060828,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0072350,GO:0072521,GO:0080090,GO:0090090,GO:0098771,GO:1901135,GO:1901360,GO:1901564,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:2000026,GO:2000112,GO:2001141 |
| Description | protein-FAD linkage |
| COG category | U |
| BRITE | ko00000,ko02000,ko03029,ko04131 |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0071704 |
| GO | 0044429 |
| GO | 0045333 |
| GO | 0044238 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1205_3a-0001 ID=EsuBft1205_3a-0001|Name=EsuBft1205_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1283bp|location=Sequence derived from alignment at Scaffold_210:105885..111292+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTTGCGTGCCAACGCGGTGTGTCCTGTCGTGTTGCCAAGCACGACACTTC GCGCCCTACACAAACAAACACACCACTGCTTGTCTGACCAGGGAAGAGAG AGATGATGCTTGCAGGTATGAAGGCGGTCGTTGCCCAGGCGGCGAGAATA CCGATAGCAACAATCAGATGCTGCGGAGGAGGCGGAGGTGCGGTGCGGTG CTACCGGCGACTTAGCACCGCCGGAGGCGGAGCCAAGGACTGGGAGGGAG AGAGGCAACCGGGGTCAGGTGGAGATGAGCTGCAGCGTGAGCTCACCCCA GAGGAGGTTTTACGGGTCGGTGCCCGTACCCAAGAGATGTGGAAGGACCA CGTGGCCCTGACGACCGAGTTCCCGGACGCGAGCCTCCCCCCCGGCGGGC ACGAAGCGTCCGTGACCCCCGACGCGGTACGCAGAAAGCGGCTCGTGTAC AGGAGCAAGCAGCGAGGCTGGCTTGAGGTTGACCTGCTGCTGGGCACGTG GGCGGAAAGGAACGTGGCCGGGCTCTCTGCGGCGGACATGGACAGCTACG AGGACATCCTCAATCTCGAAACCGTCGACATCTTCAACTTCATCACCGGC AACGCTGATCCTCCGGCCTTCGTGGACACGCCCATGCTGGCCCGGTTACA GGCATACGTTAAATCGAACCCGTTGGGGCAGTCGCCGGCCAGCTACGCTT CGGCAAAGCGAGAGAGCAACCTCACCTGATACCGGTGCAACCTCAGCCCG AAATTTGCGGCAGGTAGTGAATGTAACCATTGCTGCTTCGATCGGCCGAG ATCCGGCGCAGAGGCCAAGGGAGGCTTAAAGCCTAGGGTTGGCGTGGAGA CGTGATGGGGCGGGCTTGACACGGAAAAAGAAGGTGTTTGTTGTGTCTCG TGTGGAGAGTAAGAAGGACCGCGTCGAGCGCCGTTTGTGGTCTCCAAGGG ATGGGGCCTCCTCCTACTGACGACGACAACCGGCGACAGCGAACGACAGC TAGTTTCTTTCGCAGTGTTGCGGCAGAGTATCTTGGTTCGTTCACGCCTT GGCGGCGAGCGACTGGCGTGGTTGCCTTTGTCCGAACGCAACAATGTTTC CCGCCAGACTAATTTAAGATCCGAGTGCTATCAAGGCATGGAGCACCAAG TATAACGACAAAGACATGCCTTCGACGAACATTCTTGTACATGCCCTCGT GGGTTTGGTTTGATTACAGGCAGCGTTTCGAGCGTGTTTGGGTCTCGACG TCTCGACCGGGTGCAGACTACGGCAGCACCGAG back to topprotein sequence of EsuBft1205_3a-0001 >EsuBft1205_3 ID=EsuBft1205_3|Name=EsuBft1205_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=208bp
MMLAGMKAVVAQAARIPIATIRCCGGGGGAVRCYRRLSTAGGGAKDWEGE RQPGSGGDELQRELTPEEVLRVGARTQEMWKDHVALTTEFPDASLPPGGH EASVTPDAVRRKRLVYRSKQRGWLEVDLLLGTWAERNVAGLSAADMDSYE DILNLETVDIFNFITGNADPPAFVDTPMLARLQAYVKSNPLGQSPASYAS AKRESNLT back to topmRNA from alignment at Scaffold_210:105885..111292+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1205_3a-0001 ID=EsuBft1205_3a-0001|Name=EsuBft1205_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5408bp|location=Sequence derived from alignment at Scaffold_210:105885..111292+ (Ectocarpus subulatus male Bft15b) GTTGCGTGCCAACGCGGTGTGTCCTGTCGTGTTGCCAAGCACGACACTTC
GCGCCCTACACAAACAAACACACCACTGCTTGTCTGACCAGGGAAGAGAG
AGATGATGCTTGCAGGTATGAAGGCGGTCGTTGCCCAGGCGGCGAGAATA
CCGATAGCAACAATCAGATGCTGCGGAGGAGGCGGAGGTGCGGTGCGGTG
CTACCGGCGACTTAGCACCGCCGGAGGCGGAGCCAAGGACTGGGAGGGAG
AGAGGCAACCGGGGTCAGGTGGAGATGAGCTGCAGCGTGAGCTCACCCCA
GAGGAGGTAAGCCGGAGCTGTAAGGTTGTTCGGTGGGGACATGGTTCAAT
GCTAAAGCTGTAGACCTAATCTATGTACTTGTCTCCGAAAACGACCGTTA
AGTAAAGTGACAGGGCCGCCTCTTTAATATTATATATAGTAGTTGCCTGC
AAGCGTGGGCATGAAAATAGTATCGAGTCAGCAGCATCGCAGGAACAAAA
CAGGCAGCGGCGGACCTGCCTTACACGAGCACGGGCTTGCGTTGAGCAGC
AACTGTATGGTGCCTAGTGCCAACTGTACTAGCAAGGTGGCAAGCAAACC
CTGCCGACGGGTTCTGCCTTTTGACGTGTTTCATGCCTACCGCGGGTGTG
ACGGTCCATCACACCGTCGGTGGTGTCCGATTGACCGCCTTCGCGCGATT
AGGCCGTGTATTAACGTTTATTTTTGTCACCTACATTGAATACCTAAATT
GGATGAACCAATTTGGGTTTTCGGCCAAAAAGGTCGTTTTAACGCATTTT
GCAACACCGAACTCTAGCAACACACCCAAATGCGGCGGAATCGCTGCCGC
GAGGTGACATGGTGACCCAACCAGGTACAGCGATAGACCATGTGCACCAC
GCGGGAGCCGTAAAAATATATCAGCACACACACGTTGCCAAGCATCAGCA
GGCGGTGCCAGCGGTCCAACCCTCATTCTCAGGCTTGCCTTACAACTATG
GTTTGGACCGTCTCGCTGCACACAACCGGCCGTTGACTATTGACGTCGCA
CATGTTGGAAGGCAACCTCCACAGCAACCCAATCAGCGCGAATAGTTGGC
ACGCTCACAGAATCATTGCGATACAGCTATTTCCCAGCAGCGGGCAGTGG
GCGATGCGTGTGAGTGCCGCACGGCCAGTGTGCCACATACAGTCCCGTCT
GGGTAATAACGCCAGCACGAGTTCAGCTCATCACGGGGGTTGCAAAAGGG
GCGCAGTGCAGCTCGAGTACTTCGATTCAACAAAAAACATTTCAATTTGC
AATTGTATTTTGCTGCACCCAATATAGAAGTCCCGCTTTTCCGGGCAGAG
AAAGCCTCATCGTGTTTTTTCCTGTTGACCTATCAGCATCTTTGGCCCCC
GGCACCCCCCCGAAACTTATTTATTGCAGGGCCTCAATTTAGGTGACAAA
AATAAACGTTAATGCAGGCCCTTAAAAAGTTTATTAAGAAATAGAATAGG
GAGGGGGGAACCAGACCCTATTCCTTAACCCTAACCATAACCCAACTTCC
CCATTCTATTCTTCAACCAACATGCTGCTGTTTCCAATGCTACTATGTCT
TATACTCTGGGCTCTCCTCTAAATATGACGCTTGTTGTTGGTGTACGTAT
GTACGGTGGTCTTTCTGTGAGTTGATGTATACTTTCTGAAAATATGCTCG
TCTCTGTCCTGCTTTTTTGTACACTCCGTATTGTGTACCACAAGACTCTT
AGGGTGGGCGCTTGCCCCTCCCCACCCCCCCCGCCCGCGATTTGCTGTTG
GTGAACTGCTGTGTGTGGTGCGTTGGTCAGCTGTATCCTTGTATCCTCGC
AACCCCACCCTCCTGGCTACCGTAGTCTCGTACGCCTTGCTTGGCCCCAA
GAAGCTGTACCGGCAATTCTTATGCTGCTGTACGTCTGATCATGTCCCCA
ACAGTTAGTTACCCCTGTAGATACAGCAAAAAACAGCGCCGGCCTCCACT
CGAAATGAAACCTGACACGATCTCTCTCGACCATGGCAGCCGCCCTTAGA
TGCGCCACTACATAAGCTCGGCAGACAGCAAGCGGCTTTGGGTGCTCGTA
CTCAACACCACCACCAACACCAACAAGCCTACCATATATGACACAAGATA
ACACACCCCCTGACACCGATTTTCAAAGCTTGATTACTCCACAACAAAGA
GGATGCATAAACGAAACGATACATTTTTGGAACGCTCTCGACAAGACGGT
TCCAACGCCGCCGTTTTCGGCGCCGTGACTCTTTCCGTTGTTGAGAAATC
GAGATTTGAAAATCGGTCCAAGGGGTGTGTTATCTTGTGTCATTTACGGT
ACCCACCACGGTACCTACCGCTTTGCCGGTGACTGACTGCTACGCGATCG
GATCGACTCAAGGTTTTACGGGTCGGTGCCCGTACCCAAGAGATGTGGAA
GGACCACGTGGCCCTGACGACCGAGTTCCCGGACGCGAGCCTCCCCCCCG
GCGGGCACGAAGCGTCCGTGACCCCCGACGCGGTACGCAGAAAGCGGCTC
GTGTACAGGAGCAAGCAGCGAGGCTGGCTTGAGGTGAGTCCTGGTCGCAG
AACTGCCCCTCCCTCACCCCCCCCCTTCCTCCTCCCGCTGCCGTTTCACC
CGTTCAGGAGCATAAGAATGGTGGTAAGTATTTTCCACCGTACGAAGAAG
TGCATCTATTGTGTCCTTCCGTGTGTGTAGGGAAGAACCTGCTGGGCGCT
TGGGGCAAGATTCATCGTCATTGTGGCCGGCGGAGTAGGGCTGTTGGAAA
TATAATTTTGAGAATCACGGCGAAAGGATGGAACTCGCTGCACTTACGGC
TACACCGCAACAAGACGAACCGGTACAACATGAAACTATTTTCGCGAGAA
TCAAGATTTGTCCTCCATGTGCCCAGAATGCGCCACGTTCGATCAATCGA
GTCAACACTTTCACCACGGCTGTTCCCTTTTCCCGTACGGTCGTCGTCGT
TTTCGTGCCGACTACTTGTCGTCGTCGTTGCCGCCTGATGTTGGTGGTGT
GTGCCCGTCCAGGTTGACCTGCTGCTGGGCACGTGGGCGGAAAGGAACGT
GGCCGGGCTCTCTGCGGCGGACATGGACAGCTACGAGGACATCCTCAATC
TCGAAACCGTCGACATCTTCAACTTCATCACCGGCAACGCTGATCCTCCG
GCCTTCGTGGACACGCCCATGCTGGCCCGGTTACAGGTGCACGAGTGGTT
TGGTTGCTGGCGCGCTCTGGCTGTGGTTGTTCAAGGGATCACGTTTTATC
ATGAGAAAAGCCTAGCGTGTATGTAGGCTTGTGCTCCCTTGTATTTTTGC
GACTCTCTTCACTCACGACTCAATCAGTGTGATGACCCAAATCGACAGTA
AAAGTACAAGGCAATCGCCTACTGGAGCACAAGCCTACTTGCATTACGAG
AATGAAAACGACTATAATAAAGCGAAAGTGGCATGACGTAAATACCACAC
CCTGGTACATACTGGCACCGTTTTCTGGGAGCAGGCAAACCCGAAAGAAG
TTGATCGGGCGACCAGTTTGTCCAAGTTTTTGTAGATCCATTTTTTAATG
AGATAGCGTCACGAACAGCATTTTTATGGTAGCTCAGTAGCCTTCCCTAG
GACTTCAAGCTTGGTTTAAGTAGGGGGTGCGGGGCGCGGAAAAGGTTAGG
GATACAGAGATAGGGAGCCGAAGGATCCCCCCTCTATTTATATCCTCCCG
AAGGCGGTCCAGCTAAATAGATGTGTTGCCCCGAGCCCTTTCCCAGCGTG
GGTGGGAGGGACCCTTGGGTGTGTGTGATGTCTTCACGGGCGCTTTGCCT
GCCCGTCAACAGAGCCGAAGGTCCTCCCGAAGGTAGGTACCGGTGGTGAG
GGCTCGATTTGTCGAAAGGGCGTCGCGCGCGCGTCGATGCGCCTCCTGCC
TCTAGCCTGTGGACCGTGGATCGCCGAACGCTGGCCGCACTACGTAGGTG
GTGGAGGTTACTGCGTTCGTTGTCCGGCTGGGGTTAGCTTTTTGTCGCCG
CTTCAACGGGGGTGGGGTTCTATATTGCGTCACTGCAACTGGAAATGTAA
AGAACGCCACCAAAAAACCACCTTGTCGAAAACAGAAAGCACAACACAGC
ACACAAGTCGTACGCATTGCCTTGTATCAGCGGTCTCTATATGATTGAGA
GCTTCGCTACAAGCCGTTGCCTGAATATGCTTATGGCTGCTTGTCAAAGC
GCCCTGGCTACTTATTACTGTTGTATGCCGCCACTTGCTTTCTCCAAGCC
TCGCATTGGTTTTAGGCGGGCGTAGTCCCGTCTGGAAAATCTGCGTCTTA
TTCCGACGGTGTGGTTTTGAGCGAGGTCTCAACGGGAAGCGCCGGGGAAC
AAAAAAAATCCATGCCTACTGCGTATCCATCCGACTCCTCCGAAGACCTT
GGGATACCAGTTACTGTAGATACAGTAGCTCCCTCACAAGCAGTATGATC
GCCCTCATAACGAATCATCGCCCAAATAGCAGCAGCACGAGTACGATCAA
AGCTGGCGCACGAGAGTACACCTTTCCGGAAAACACATTTTTTAAGGTCG
GCGGGCGCGTTCTTCGCGCTTCGGGGAAGAGGCGGGGTAAGGGTAGGCTT
ATGGAAGCTCCGGCGGTTCAAATGCAGACAGAAATGCATACCGGCTGATT
CCTGTTCTTCGCCCCCCCCCTCCTGGCCTCCTTGCCTTTGCCGTATCGCG
TGCAAATCCCCGTGACCTGCCAACAGGCATACGTTAAATCGAACCCGTTG
GGGCAGTCGCCGGCCAGCTACGCTTCGGCAAAGCGAGAGAGCAACCTCAC
CTGATACCGGTGCAACCTCAGCCCGAAATTTGCGGCAGGTAGTGAATGTA
ACCATTGCTGCTTCGATCGGCCGAGATCCGGCGCAGAGGCCAAGGGAGGC
TTAAAGCCTAGGGTTGGCGTGGAGACGTGATGGGGCGGGCTTGACACGGA
AAAAGAAGGTGTTTGTTGTGTCTCGTGTGGAGAGTAAGAAGGACCGCGTC
GAGCGCCGTTTGTGGTCTCCAAGGGATGGGGCCTCCTCCTACTGACGACG
ACAACCGGCGACAGCGAACGACAGCTAGTTTCTTTCGCAGTGTTGCGGCA
GAGTATCTTGGTTCGTTCACGCCTTGGCGGCGAGCGACTGGCGTGGTTGC
CTTTGTCCGAACGCAACAATGTTTCCCGCCAGACTAATTTAAGATCCGAG
TGCTATCAAGGCATGGAGCACCAAGTATAACGACAAAGACATGCCTTCGA
CGAACATTCTTGTACATGCCCTCGTGGGTTTGGTTTGATTACAGGCAGCG
TTTCGAGCGTGTTTGGGTCTCGACGTCTCGACCGGGTGCAGACTACGGCA
GCACCGAG back to topCoding sequence (CDS) from alignment at Scaffold_210:105885..111292+ >EsuBft1205_3a-0001 ID=EsuBft1205_3a-0001|Name=EsuBft1205_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=627bp|location=Sequence derived from alignment at Scaffold_210:105885..111292+ (Ectocarpus subulatus male Bft15b) ATGATGCTTGCAGGTATGAAGGCGGTCGTTGCCCAGGCGGCGAGAATACC GATAGCAACAATCAGATGCTGCGGAGGAGGCGGAGGTGCGGTGCGGTGCT ACCGGCGACTTAGCACCGCCGGAGGCGGAGCCAAGGACTGGGAGGGAGAG AGGCAACCGGGGTCAGGTGGAGATGAGCTGCAGCGTGAGCTCACCCCAGA GGAGGTTTTACGGGTCGGTGCCCGTACCCAAGAGATGTGGAAGGACCACG TGGCCCTGACGACCGAGTTCCCGGACGCGAGCCTCCCCCCCGGCGGGCAC GAAGCGTCCGTGACCCCCGACGCGGTACGCAGAAAGCGGCTCGTGTACAG GAGCAAGCAGCGAGGCTGGCTTGAGGTTGACCTGCTGCTGGGCACGTGGG CGGAAAGGAACGTGGCCGGGCTCTCTGCGGCGGACATGGACAGCTACGAG GACATCCTCAATCTCGAAACCGTCGACATCTTCAACTTCATCACCGGCAA CGCTGATCCTCCGGCCTTCGTGGACACGCCCATGCTGGCCCGGTTACAGG CATACGTTAAATCGAACCCGTTGGGGCAGTCGCCGGCCAGCTACGCTTCG GCAAAGCGAGAGAGCAACCTCACCTGA back to top
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