EsuBft1106_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1106_5a-0001
Unique Name	EsuBft1106_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_210	contig	Scaffold_210:57824..61325 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1106_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Length	300
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1106_5a	EsuBft1106_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_210 57824..61325 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1106_5a-0001	EsuBft1106_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_210 59012..61325 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1106_5a-0001-exon	agat-exon-91474	Ectocarpus subulatus male Bft15b	exon	Scaffold_210 57824..59231 -
EsuBft1106_5a-0001-exon	agat-exon-91475	Ectocarpus subulatus male Bft15b	exon	Scaffold_210 59316..60540 -
EsuBft1106_5a-0001-exon	agat-exon-91473	Ectocarpus subulatus male Bft15b	exon	Scaffold_210 60674..61038 -
EsuBft1106_5a-0001-exon	EsuBft1106_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_210 61321..61325 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1106_5a-0001-exon	agat-three_prime_utr-1005	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_210 57824..59011 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1106_5a-0001-cds	EsuBft1106_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_210 59012..59231 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_210:57824..61325-
coding sequence from alignment at Scaffold_210:57824..61325-

spliced messenger RNA

>EsuBft1106_5a-0001 ID=EsuBft1106_5a-0001|Name=EsuBft1106_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3003bp|location=Sequence derived from alignment at Scaffold_210:57824..61325- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGGGGAGGCACGCTCTCCCTCGCGCGCCCGCAGCCACTCTCGCC
GGAGGAGTCGCTCCCCCCTGAAGAGTCGTTCTCCTTCGCGCGCCCGCAGC
CGCTCTCGCCGGAGGAGTCGCTCTCCCTCGCGCTCGAGCAAGCGGCGCCG
CTCTCTATCGCGGTCGAATGCACGGCACCACTCCCTCTCGCCGCCACCCA
GGCAGAGCCAGCGCCGGGAGTACTCCTTGAAGTCCAACCCGCCGCGTGGC
CTCCCGCGCGACCACCGCGGCACCGGCAACGAGCGCGGCTGGGAACCACG
CCGTTCAATCCCCGTCGCCTTCCACCGCGCGGGCCGCCCAGGCGCTGTAG
GGGCCGTCCCAGCAGCCGAGAGGTTAACCAGATGTCGAAGGTGATAAAGA
GAGTCCGTAAGAGAGTTACGGACAAGGTATCGGGTCAAGTGTACGCAGGG
CCAGGCCCGGGAGAGTTGTCGATGAACAATCGCGCAGTGAGGCTTCGGCA
GAAAGTCATAAGCGTTCTTCGTACTCTTGATTCTGGAGTGATTGCGCTCG
AACCGGACGTATTTCCGAACGGTTTCCGGGCAACACAACCAGACGTTCAC
ACCGGTCGGCGTAGGGAGTTGCTGACCGATCTACTGCACGAACACCTGCT
GACACACAACCGAATTACTTCGGCCGACAGCCTACAAGTGTATCGCATAG
CAGGACAAGTAGTAGACACCCCACGTGACAGTGTAACGGCTACCGACTGG
CTGCGTCTCATTGTGCGCGAACATGCCTTGACGGGGGGCGCGGTTGAGTA
TGCTTATGCCGCGTTGCAGTCTATGGTACTTGGTACGCCCGAATCCATGC
CCACCGCCGCAGCCCGCGTATTAGCAGCCTTCCGCGCCACATTGGTAGAT
CCTGACCGGCCCCACGTCACTGAACAGCGTTTTTTCTGGCGGTACATCTC
GGCAGTGCAGATGATAGCCTTGTTCGAAGGCGTCACGGAGGTACTCCTGC
CGAATCCGGTTGACGGAGCCGGGGTCAACGGGCTGCTACATGAACGCACA
CACTCTATCAGCACCACCCTGCAGAAGTTGCGTCAAGAGTCTCATAACCC
CATGGGACATCACATGCGCCACCGACGCACGGTAGCTGAGGGCCTGTTCC
ACGAGTTTGTAGCCGTTTTGAGCGCGCGTTCCAAGCCATACATGACCCCG
CCTACGCCCCGCAAACCGACCGGCGGGCAAGATCGCCTCTGTGCGGCTAA
CCCCACACCTCGCCGCATGTCGATGCCTGAATATCGACAGCTATTCACCG
CAGATAGCTTGGTGTCGTACAACAGTTCGACGATACCACTCACCTCGTCG
GGAGGCAGCGTGCCCCGCCGGCCGCCGCCTCCCACCGGGCTAATCTCTGT
TGCCGCCGTAGCGCCGCCCGTTGCTGCCCCAGAAACCCCTTCGTCGGTTG
CCGTCGCAGCGGCCAGCACGCCCGGCCAGCACGGTGTTCCTTTCACGGAC
AGAGTACCGTCATCGACGGCCGCACCAGCGACAACGCCACCAAAGGCCAC
CACTCCGGCCACCGCGGTGACACACCCAGCGGTGACTGCACCCCGGTGGC
GACCCGACCTACTGGCAGCGTCATTCTACAAAGACGTGCCACGTCCGGCG
AGCCGTGGCGCTACTCACACGCGCCGCGTCGTAGCCGCGTTGACGCCCGC
CCATTGCGATACGGCCGTCGCCATGTGCCTCGAGCTTCACGTGTCGGGCG
AGCATGAGGTGGCGATGATGACAGGGGACATCCCGCTGGGGCCTCGGGAA
GACGCCGACATGTGAAACGAGGACGCGGGTCTAGCCAAACCGGGGCACCT
TGCGTCCGCGAGGGCGGAGCACGGCGCCGGCGATCAGTTGTGGATACGTG
GTGAGATCGAACGAGTTGGGCGTAGACGTAAGCCGTACCCAGCGGAGAGT
TTACTTGATACCGGGGCGGGTGGGGGCAACTACATTTCATTAGAGCTGTG
GTTTCGCGTACGTAGCTTAGCGAGGTGCAGGTTGGACAAATGCTCGGCGG
GAGCCTTGGAAGCAGCAAATCCGTCGGAAAGCGGCGTGCCCCCGATGCGC
ATTTCAGGACATGTCACGAGCCCAATCCTGTCCAAAGCCGACTCTCAAGT
ACGATTCGTCACGGACAGAGTAGTACCGGATCTCCCGTATGGTTTTATCA
TCAGAGCTAAATATCTGCGACGCAACAAGAGCACGCTTGATTTCGGAGAA
GGCAAAGGCTTTCAACCGACGCCTGACACGCCCTTCGTACCGTTTCTGTC
GAGGCCGGTAGACCACCCTACCTAACCGTCACCGCTCTCAGCCGCACACG
ACCGCTTTGCTCTGTTGACATGCGACCCGCAACGCGACACTAACCTGTCC
GACATAACCCCGCTGCCCGAGCTGTCCAGTTATCGTGACGTCGCGTAGGA
GGATGACAGCACCCTGGAATGGGACCTGGTGCTAGGCTCGCAGATGTCGT
CAGGGCTTACTACTATCGCGATGCAGACTGTAGCGATAGGTCCTCAACCA
CAGGACAGGCAGCTGGTGATGGTGTTGCCCGCGGAACGATTCAATCTAGA
GAAGGGAGCCACAGCTGGGATTGCACGTGCAGTGATGTGGTGGACGCCGG
GAACACCGGTGTACTGCAAGTTGGTAAACCGCGATGCTCGTGTTGTCGAA
GTCACTATCGGTAGCATTTGGCGCCAGGATGATCGCCCTCAATGTCCGCG
ACCGTGGCCGTTTCGACTCTTTGTTCGACGATACCCCGTCCACTGTTGAC
CCTCCACTCCCTGACCCGGTTGTTGTGCCCACCCGTGACACGAGCGACGA
GACCTCAGCGGCCTCGCCGCCCACCGTACGAGCGGCCGACGCTCACATGG
GTCAGCTTGGAGCGCTACAGAAGCAGGAGTTGGTCGAGGTTTTGGCCAAG
TTCGTAGAGGAAGGCCTATTCCCGATCGACCCCAAGCGAGTGGCAGCATG
CGG

protein sequence of EsuBft1106_5a-0001

>EsuBft1106_5 ID=EsuBft1106_5|Name=EsuBft1106_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=604bp
MRRGGTLSLARPQPLSPEESLPPEESFSFARPQPLSPEESLSLALEQAAP
LSIAVECTAPLPLAATQAEPAPGVLLEVQPAAWPPARPPRHRQRARLGTT
PFNPRRLPPRGPPRRCRGRPSSREVNQMSKVIKRVRKRVTDKVSGQVYAG
PGPGELSMNNRAVRLRQKVISVLRTLDSGVIALEPDVFPNGFRATQPDVH
TGRRRELLTDLLHEHLLTHNRITSADSLQVYRIAGQVVDTPRDSVTATDW
LRLIVREHALTGGAVEYAYAALQSMVLGTPESMPTAAARVLAAFRATLVD
PDRPHVTEQRFFWRYISAVQMIALFEGVTEVLLPNPVDGAGVNGLLHERT
HSISTTLQKLRQESHNPMGHHMRHRRTVAEGLFHEFVAVLSARSKPYMTP
PTPRKPTGGQDRLCAANPTPRRMSMPEYRQLFTADSLVSYNSSTIPLTSS
GGSVPRRPPPPTGLISVAAVAPPVAAPETPSSVAVAAASTPGQHGVPFTD
RVPSSTAAPATTPPKATTPATAVTHPAVTAPRWRPDLLAASFYKDVPRPA
SRGATHTRRVVAALTPAHCDTAVAMCLELHVSGEHEVAMMTGDIPLGPRE
DADM

mRNA from alignment at Scaffold_210:57824..61325-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1106_5a-0001 ID=EsuBft1106_5a-0001|Name=EsuBft1106_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3502bp|location=Sequence derived from alignment at Scaffold_210:57824..61325- (Ectocarpus subulatus male Bft15b)
ATGAGGTACGTCTGAATGTTGCCGGCACAACGTGCCATACTATTCTCGCC
ATATGCCAAAACTGACAAGTAAAACCTTTTTGTTCTTGTCTCACTCTTTC
GTACTTTTTCTTCCCGTTTTCCCGCTTTCTTGTTAATTTTTTTCCTTTTT
CTACGCAGATGGCTTCTCCCGTTCGCTCCACCTATCGCCGCAACCAGGGT
CGCTCGCGCTCTCGCAGTCGGGAGCAGTCGAGGAGGACGAAGGAGGCACG
CTCTCCACACTCCCCACGCTCTCGCAGTAGGGAACAGGCGGGGAGGCACG
CTCTCCCTCGCGCGCCCGCAGCCACTCTCGCCGGAGGAGTCGCTCCCCCC
TGAAGAGTCGTTCTCCTTCGCGCGCCCGCAGCCGCTCTCGCCGGAGGAGT
CGCTCTCCCTCGCGCTCGAGCAAGCGGCGCCGCTCTCTATCGCGGTCGAA
TGCACGGCACCACTCCCTCTCGCCGCCACCCAGGCAGAGCCAGCGCCGGG
AGTACTCCTTGAAGTCCAACCCGCCGCGTGGCCTCCCGCGCGACCACCGC
GGCACCGGCAACGAGCGCGGCTGGGAACCACGCCGTTCAATCCCCGTCGC
CTTCCACCGCGCGGGCCGCCCAGGCGCTGTAGGGGCCGTCCCAGCAGCCG
AGGTACATCGAGGAGCGGCATGGGCTGCACCAGCAGCGCGGAACGGCCGG
GGTGCTGCGAATACAAGTCCGATCCAGGATCCACGAGCACCTACCCACGA
GTTCCCGCGTCCGCCTGGTAAGCCCTTCGGTACAGAGGTTAACCAGATGT
CGAAGGTGATAAAGAGAGTCCGTAAGAGAGTTACGGACAAGGTATCGGGT
CAAGTGTACGCAGGGCCAGGCCCGGGAGAGTTGTCGATGAACAATCGCGC
AGTGAGGCTTCGGCAGAAAGTCATAAGCGTTCTTCGTACTCTTGATTCTG
GAGTGATTGCGCTCGAACCGGACGTATTTCCGAACGGTTTCCGGGCAACA
CAACCAGACGTTCACACCGGTCGGCGTAGGGAGTTGCTGACCGATCTACT
GCACGAACACCTGCTGACACACAACCGAATTACTTCGGCCGACAGCCTAC
AAGTGTATCGCATAGCAGGACAAGTAGTAGACACCCCACGTGACAGTGTA
ACGGCTACCGACTGGCTGCGTCTCATTGTGCGCGAACATGCCTTGACGGG
GGGCGCGGTTGAGTATGCTTATGCCGCGTTGCAGTCTATGGTACTTGGTA
CGCCCGAATCCATGCCCACCGCCGCAGCCCGCGTATTAGCAGCCTTCCGC
GCCACATTGGTAGATCCTGACCGGCCCCACGTCACTGAACAGCGTTTTTT
CTGGCGGTACATCTCGGCAGTGCAGATGATAGCCTTGTTCGAAGGCGTCA
CGGAGGTACTCCTGCCGAATCCGGTTGACGGAGCCGGGGTCAACGGGCTG
CTACATGAACGCACACACTCTATCAGCACCACCCTGCAGAAGTTGCGTCA
AGAGTCTCATAACCCCATGGGACATCACATGCGCCACCGACGCACGGTAG
CTGAGGGCCTGTTCCACGAGTTTGTAGCCGTTTTGAGCGCGCGTTCCAAG
CCATACATGACCCCGCCTACGCCCCGCAAACCGACCGGCGGGCAAGATCG
CCTCTGTGCGGCTAACCCCACACCTCGCCGCATGTCGATGCCTGAATATC
GACAGCTATTCACCGCAGATAGCTTGGTGTCGTACAACAGTTCGACGATA
CCACTCACCTCGTCGGGAGGCAGCGTGCCCCGCCGGCCGCCGCCTCCCAC
CGGGCTAATCTCTGTTGCCGCCGTAGCGCCGCCCGTTGCTGCCCCAGAAA
CCCCTTCGTCGGTTGCCGTCGCAGCGGCCAGCACGCCCGGCCAGCACGGT
GTTCCTTTCACGGACAGAGTACCGTCATCGACGGCCGCACCAGCGACAAC
GCCACCAAAGGCCACCACTCCGGCCACCGCGGTGACACACCCAGCGGTGA
CTGCACCCCGGTCCGTGATCCTCGATCACCTCATGGAACATGGGATCTGC
TACGCCCACGTGTTCTCGGCCTGCCGTCGATAGGGCCGTTGCAGGTGGCG
ACCCGACCTACTGGCAGCGTCATTCTACAAAGACGTGCCACGTCCGGCGA
GCCGTGGCGCTACTCACACGCGCCGCGTCGTAGCCGCGTTGACGCCCGCC
CATTGCGATACGGCCGTCGCCATGTGCCTCGAGCTTCACGTGTCGGGCGA
GCATGAGGTGGCGATGATGACAGGGGACATCCCGCTGGGGCCTCGGGAAG
ACGCCGACATGTGAAACGAGGACGCGGGTCTAGCCAAACCGGGGCACCTT
GCGTCCGCGAGGGCGGAGCACGGCGCCGGCGATCAGTTGTGGATACGTGG
TGAGATCGAACGAGTTGGGCGTAGACGTAAGCCGTACCCAGCGGAGAGTT
TACTTGATACCGGGGCGGGTGGGGGCAACTACATTTCATTAGAGCTGTGG
TTTCGCGTACGTAGCTTAGCGAGGTGCAGGTTGGACAAATGCTCGGCGGG
AGCCTTGGAAGCAGCAAATCCGTCGGAAAGCGGCGTGCCCCCGATGCGCA
TTTCAGGACATGTCACGAGCCCAATCCTGTCCAAAGCCGACTCTCAAGTA
CGATTCGTCACGGACAGAGTAGTACCGGATCTCCCGTATGGTTTTATCAT
CAGAGCTAAATATCTGCGACGCAACAAGAGCACGCTTGATTTCGGAGAAG
GCAAAGGCTTTCAACCGACGCCTGACACGCCCTTCGTACCGTTTCTGTCG
AGGCCGGTAGACCACCCTACCTAACCGTCACCGCTCTCAGCCGCACACGA
CCGCTTTGCTCTGTTGACATGCGACCCGCAACGCGACACTAACCTGTCCG
ACATAACCCCGCTGCCCGAGCTGTCCAGTTATCGTGACGTCGCGTAGGAG
GATGACAGCACCCTGGAATGGGACCTGGTGCTAGGCTCGCAGATGTCGTC
AGGGCTTACTACTATCGCGATGCAGACTGTAGCGATAGGTCCTCAACCAC
AGGACAGGCAGCTGGTGATGGTGTTGCCCGCGGAACGATTCAATCTAGAG
AAGGGAGCCACAGCTGGGATTGCACGTGCAGTGATGTGGTGGACGCCGGG
AACACCGGTGTACTGCAAGTTGGTAAACCGCGATGCTCGTGTTGTCGAAG
TCACTATCGGTAGCATTTGGCGCCAGGATGATCGCCCTCAATGTCCGCGA
CCGTGGCCGTTTCGACTCTTTGTTCGACGATACCCCGTCCACTGTTGACC
CTCCACTCCCTGACCCGGTTGTTGTGCCCACCCGTGACACGAGCGACGAG
ACCTCAGCGGCCTCGCCGCCCACCGTACGAGCGGCCGACGCTCACATGGG
TCAGCTTGGAGCGCTACAGAAGCAGGAGTTGGTCGAGGTTTTGGCCAAGT
TCGTAGAGGAAGGCCTATTCCCGATCGACCCCAAGCGAGTGGCAGCATGC
GG

Coding sequence (CDS) from alignment at Scaffold_210:57824..61325-

>EsuBft1106_5a-0001 ID=EsuBft1106_5a-0001|Name=EsuBft1106_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1815bp|location=Sequence derived from alignment at Scaffold_210:57824..61325- (Ectocarpus subulatus male Bft15b)
ATGAGGCGGGGAGGCACGCTCTCCCTCGCGCGCCCGCAGCCACTCTCGCC
GGAGGAGTCGCTCCCCCCTGAAGAGTCGTTCTCCTTCGCGCGCCCGCAGC
CGCTCTCGCCGGAGGAGTCGCTCTCCCTCGCGCTCGAGCAAGCGGCGCCG
CTCTCTATCGCGGTCGAATGCACGGCACCACTCCCTCTCGCCGCCACCCA
GGCAGAGCCAGCGCCGGGAGTACTCCTTGAAGTCCAACCCGCCGCGTGGC
CTCCCGCGCGACCACCGCGGCACCGGCAACGAGCGCGGCTGGGAACCACG
CCGTTCAATCCCCGTCGCCTTCCACCGCGCGGGCCGCCCAGGCGCTGTAG
GGGCCGTCCCAGCAGCCGAGAGGTTAACCAGATGTCGAAGGTGATAAAGA
GAGTCCGTAAGAGAGTTACGGACAAGGTATCGGGTCAAGTGTACGCAGGG
CCAGGCCCGGGAGAGTTGTCGATGAACAATCGCGCAGTGAGGCTTCGGCA
GAAAGTCATAAGCGTTCTTCGTACTCTTGATTCTGGAGTGATTGCGCTCG
AACCGGACGTATTTCCGAACGGTTTCCGGGCAACACAACCAGACGTTCAC
ACCGGTCGGCGTAGGGAGTTGCTGACCGATCTACTGCACGAACACCTGCT
GACACACAACCGAATTACTTCGGCCGACAGCCTACAAGTGTATCGCATAG
CAGGACAAGTAGTAGACACCCCACGTGACAGTGTAACGGCTACCGACTGG
CTGCGTCTCATTGTGCGCGAACATGCCTTGACGGGGGGCGCGGTTGAGTA
TGCTTATGCCGCGTTGCAGTCTATGGTACTTGGTACGCCCGAATCCATGC
CCACCGCCGCAGCCCGCGTATTAGCAGCCTTCCGCGCCACATTGGTAGAT
CCTGACCGGCCCCACGTCACTGAACAGCGTTTTTTCTGGCGGTACATCTC
GGCAGTGCAGATGATAGCCTTGTTCGAAGGCGTCACGGAGGTACTCCTGC
CGAATCCGGTTGACGGAGCCGGGGTCAACGGGCTGCTACATGAACGCACA
CACTCTATCAGCACCACCCTGCAGAAGTTGCGTCAAGAGTCTCATAACCC
CATGGGACATCACATGCGCCACCGACGCACGGTAGCTGAGGGCCTGTTCC
ACGAGTTTGTAGCCGTTTTGAGCGCGCGTTCCAAGCCATACATGACCCCG
CCTACGCCCCGCAAACCGACCGGCGGGCAAGATCGCCTCTGTGCGGCTAA
CCCCACACCTCGCCGCATGTCGATGCCTGAATATCGACAGCTATTCACCG
CAGATAGCTTGGTGTCGTACAACAGTTCGACGATACCACTCACCTCGTCG
GGAGGCAGCGTGCCCCGCCGGCCGCCGCCTCCCACCGGGCTAATCTCTGT
TGCCGCCGTAGCGCCGCCCGTTGCTGCCCCAGAAACCCCTTCGTCGGTTG
CCGTCGCAGCGGCCAGCACGCCCGGCCAGCACGGTGTTCCTTTCACGGAC
AGAGTACCGTCATCGACGGCCGCACCAGCGACAACGCCACCAAAGGCCAC
CACTCCGGCCACCGCGGTGACACACCCAGCGGTGACTGCACCCCGGTGGC
GACCCGACCTACTGGCAGCGTCATTCTACAAAGACGTGCCACGTCCGGCG
AGCCGTGGCGCTACTCACACGCGCCGCGTCGTAGCCGCGTTGACGCCCGC
CCATTGCGATACGGCCGTCGCCATGTGCCTCGAGCTTCACGTGTCGGGCG
AGCATGAGGTGGCGATGATGACAGGGGACATCCCGCTGGGGCCTCGGGAA
GACGCCGACATGTGA