EsuBft3542_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3542_2a-0001
Unique Name	EsuBft3542_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_210	contig	Scaffold_210:4896..7164 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3542_2
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	226
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-00_003870.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3542_2a	EsuBft3542_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_210 4896..7164 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3542_2a-0001-exon	EsuBft3542_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_210 4896..7164 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3542_2a-0001-exon	agat-three_prime_utr-13730	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_210 4896..7014 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3542_2a-0001-cds	EsuBft3542_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_210 7015..7164 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3542_2a-0001	EsuBft3542_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_210 7015..7164 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_210:4896..7164-
coding sequence from alignment at Scaffold_210:4896..7164-

spliced messenger RNA

>EsuBft3542_2a-0001 ID=EsuBft3542_2a-0001|Name=EsuBft3542_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2269bp|location=Sequence derived from alignment at Scaffold_210:4896..7164- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCAACGGGGGAGTTCGCTGGTATCGCAATGGGGGGTAGGCGGGCG
CGTTTTGTTTCTTGCGCTGAGTGCTTCTCTCTTCTTCCTGACGCGAGCAT
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TAGTGCGGTTTTCAAGGCATGCTGCTCGATAACCAGGGCGTCAGGGCTGC
ATTGTTCTTTCGCAGTTCGGGCTCGATTGTCTAAACCGCCGGTATATTTT
GAGAAAGGAGTATCCATATTTCCGAGTGTTGGTTGACACTCCTTGTAATA
CATACATACACATGTACATATGTACATATCATATTCATTTGTACACATGT
ATACGGTGTGCTGTTGAAT

protein sequence of EsuBft3542_2a-0001

>EsuBft3542_2 ID=EsuBft3542_2|Name=EsuBft3542_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MLQRGSSLVSQWGVGGRVLFLALSASLFFLTRASEMFAVSXXXXXXXXXX

mRNA from alignment at Scaffold_210:4896..7164-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3542_2a-0001 ID=EsuBft3542_2a-0001|Name=EsuBft3542_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2269bp|location=Sequence derived from alignment at Scaffold_210:4896..7164- (Ectocarpus subulatus male Bft15b)
ATGTTGCAACGGGGGAGTTCGCTGGTATCGCAATGGGGGGTAGGCGGGCG
CGTTTTGTTTCTTGCGCTGAGTGCTTCTCTCTTCTTCCTGACGCGAGCAT
CCGAGATGTTTGCGGTGTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TAGTGCGGTTTTCAAGGCATGCTGCTCGATAACCAGGGCGTCAGGGCTGC
ATTGTTCTTTCGCAGTTCGGGCTCGATTGTCTAAACCGCCGGTATATTTT
GAGAAAGGAGTATCCATATTTCCGAGTGTTGGTTGACACTCCTTGTAATA
CATACATACACATGTACATATGTACATATCATATTCATTTGTACACATGT
ATACGGTGTGCTGTTGAAT

Coding sequence (CDS) from alignment at Scaffold_210:4896..7164-

>EsuBft3542_2a-0001 ID=EsuBft3542_2a-0001|Name=EsuBft3542_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_210:4896..7164- (Ectocarpus subulatus male Bft15b)
ATGTTGCAACGGGGGAGTTCGCTGGTATCGCAATGGGGGGTAGGCGGGCG
CGTTTTGTTTCTTGCGCTGAGTGCTTCTCTCTTCTTCCTGACGCGAGCAT
CCGAGATGTTTGCGGTGTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN