EsuBft3135_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3135_3a-0001
Unique NameEsuBft3135_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:84640..86981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3135_3
Protein domainsIPR002181
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length88
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3135_3aEsuBft3135_3aEctocarpus subulatus male Bft15bgeneScaffold_106 84640..86981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3135_3a-0001EsuBft3135_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 84780..86819 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3135_3a-0001-exonagat-exon-36338Ectocarpus subulatus male Bft15bexonScaffold_106 84640..84943 +
EsuBft3135_3a-0001-exonagat-exon-36339Ectocarpus subulatus male Bft15bexonScaffold_106 85941..85987 +
EsuBft3135_3a-0001-exonagat-exon-36337Ectocarpus subulatus male Bft15bexonScaffold_106 86280..86637 +
EsuBft3135_3a-0001-exonEsuBft3135_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 86804..86981 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3135_3a-0001-exonagat-five_prime_utr-7867Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_106 84640..84779 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3135_3a-0001-cdsEsuBft3135_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 84780..84943 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3135_3a-0001-exonagat-three_prime_utr-12402Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_106 86820..86981 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3135_3a-0001 ID=EsuBft3135_3a-0001|Name=EsuBft3135_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=887bp|location=Sequence derived from alignment at Scaffold_106:84640..86981+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACCGCGCCATCGAGGCGGCTCTTAATCGACCATCTATCTAGCTCAAACA
GCCTATAATAGAGGCCTCTCGGATCTTCATGCCACTCTAACTGCTTCACA
TGCCTTCCGAGCTTGCTCTGGGTCCACCTGGCGGCGGCCCATGCTTATCA
ACAAAACCAGCAAAAGACCGACGATGGCCCGCGTCGGCGGTGGGTGGTGG
TGGTGCTGCTGTATCTCGTCGCTGGATGCTCTGATTGCGACGCTGAAGTG
CTCAAGCGAAAACTCGGGTCTCTCCCAGTGCTGCACGACTGAAAAAAAAC
ACAAGGTGGGCCAGCAGGCTTGTGAGGTGAACAGCCCCACAGCTCTACCA
GGAAACGGAGGAGGAAGAGGAGACCCTCTGNTCGGTGCACGTGCCCGTCG
AACGGGAGGAATGACCCGGTCGGGCAGGAAACGGAGGAGGAAGAGCCAAC
GCCCAGACTACTTCCTAGCTATTTTCGCCGAGAAAGAAAGGAAGGCAGAG
TTTCGCCAATGCAGTAAATGCAAGTACCGGAAATCGGACAGGAGCCGCGT
AAGGTGGTATCCCATGGATGCTGCAGGAGATCATGTCGCGGAGGGTAATG
CGATGGTGAGTGATGGTGATTGGTGGTGCGGCCGTTGCTACCAGAGCCGG
TTGAACGGCATGAAGAGAGACGACAAACCGACAGAGGAACAAGCGGGGGA
CGAGGCGCNGCGCCGACGCTTCTAGAGCCTTCGAGCACGGTGCGCAGGAT
GATGGATGACGTCCTCGGTCGAGGTGAGATCCTTTGCTGGCAGAACGTCG
CCGGTTGGCTAGCTGCTGAACGCGCGAAGGTTGGCATGGGGGAGATAACG
GGGAAGTACGCACGACAACTCGTCCTGGACTTGTTTA
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protein sequence of EsuBft3135_3a-0001

>EsuBft3135_3 ID=EsuBft3135_3|Name=EsuBft3135_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MLINKTSKRPTMARVGGGWWWCCCISSLDALIATLKCSSENSGLSQCCTT
EKKHKVGQQACEVNSPTALPGNGGGRGDPLXGARARRTGGMTRSGRKRRR
KSQRPDYFLAIFAEKERKAEFRQCSKCKYRKSDRSRVRWYPMDAAGDHVA
EGNAMVSDGDWWCGRCYQSRLNGMKRDDKPTEEQAGDEAXRRRF
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mRNA from alignment at Scaffold_106:84640..86981+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3135_3a-0001 ID=EsuBft3135_3a-0001|Name=EsuBft3135_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2342bp|location=Sequence derived from alignment at Scaffold_106:84640..86981+ (Ectocarpus subulatus male Bft15b)
CACCGCGCCATCGAGGCGGCTCTTAATCGACCATCTATCTAGCTCAAACA
GCCTATAATAGAGGCCTCTCGGATCTTCATGCCACTCTAACTGCTTCACA
TGCCTTCCGAGCTTGCTCTGGGTCCACCTGGCGGCGGCCCATGCTTATCA
ACAAAACCAGCAAAAGACCGACGATGGCCCGCGTCGGCGGTGGGTGGTGG
TGGTGCTGCTGTATCTCGTCGCTGGATGCTCTGATTGCGACGCTGAAGTG
CTCAAGCGAAAACTCGGGTCTCTCCCAGTGCTGCACGACTGAAAAAAAAC
ACAAGTACGCTGAATAACGCTTCCAACGGGAAAGTAGCCCCTTGTGGAAA
CTTCTCTGATCAGGCGGCTCGCTTGGCAACAGACCTCCACACCTAGCACC
GGCTCTTGAGGGCGAACGAGAGCATAAACTGTCCAGACTTAAAAGAGGTA
TGTAAATAAGATGCCAGGGCACGCCAGGGTATGTTTTATATGTCCAGTTG
CGCACGGTATGGTGAAAAAGTTGGACTTTAGCTAGAAGAGCGTACCACCA
TCCAGCAGCTCCAAAATCAGGGAGCGAGCTTCACACGCGACCCGACCTCT
GCGCGAGGTAGTTGTATTGCAGCCTAACTATGCTGCCGCCTTATACTTAG
GTTGTGTTTCCACCTAATGCAAAAGGTTCGAGGCGATTTGGTGCGGCAGG
GGATAAGCATGGTGTGTCCAAAATTCAAATTTCAGGAGAGTCCACGTCTT
GGGTCCGAACTCAGCCCTCTTACACGTTGCGCATGTACATCCATCCATTG
CATCCACCATTCACACCCAAGATACGATGGAAATGCTCGATGCAGTAATT
CCAGCTCAGGGTCAGCCAATCACTACGAGTTTCAGTCGAATTGGGCTTTC
AAGAGGGCAAGTACGATTTCTTCGAGTGCAATTATTACGCTCGGTGCTTT
GCCGATATACGAGCCGAACATGACTCGGGGCGCTTAGCTGCAGACACTCC
AGTCCGTGCATAAAGATTTAAACGCCGCAGCATCATAGGGTCAGGTAGAT
AAACTACGTATTTGAACAGGTTTCAGTCCGTTGCGTTCTCAGGTGCATAG
GCGCGCCTGTAAAGAGGATCAGATCTTATGCATGGGTTAGAAGGGGCACC
GAAGATCCCACCCCACGAATAAGCGTGCGCCTGGCTTAGCTGTACGTTCA
AGAGGAACATGTTGTTTTTGTAACTCTGGTCAGGTTTCGAATGCATGGAC
AAACAGCCGGCATAGGTCGAGCTGCTGCCAGATGAATCGTCAGAGACGTA
GGGTGGGCCAGCAGGCTTGTGAGGTGAACAGCCCCACAGCTCTACCAGGT
ACGCCACCGGCGATGCCTCGGAACCAGTATGGGAGCCCTTCTACACCCGG
AAGTGGGGGTATGCAGCTGATACTAACCCTTCGACAGCTCACGGAAGGCG
CGCTATCCCCGCGTCAGCCAGTGGTCGACGACACAGGAGGAGACTCCACA
AGTGAACGTCCACGGAGCGGGAGCAGGAGACAGGGTAACCTAACCACCGA
GGCGCACACCCCCGTCGCCGCGACAAAGCGCGACGCGGGAGATTCCGGTG
CACGTGTCCGTCGAACGGGAGGAAAGACCCGGTCGGGCAGGAAACGGAGG
AGGAAGAGGAGACCCTCTGNTCGGTGCACGTGCCCGTCGAACGGGAGGAA
TGACCCGGTCGGGCAGGAAACGGAGGAGGAAGAGCCAACGCCCAGACTAC
TTCCTAGCTATTTTCGCCGAGAAAGAAAGGAAGGCAGAGTTTCGCCAATG
CAGTAAATGCAAGTACCGGAAATCGGACAGGAGCCGCGTAAGGTGGTATC
CCATGGATGCTGCAGGAGATCATGTCGCGGAGGGTAATGCGATGGTGAGT
GATGGTGATTGGTGGTGCGGCCGTTGCTACCAGAGCCGGTTGAACGGCAT
GAAGAGAGACGACAAACCGACAGAGGAACAAGCGGGGGACGAGGCGCNGT
ATCCCGTGGATGCTGCAGGAGATCATGTCGCGGAGGGTATTGCGATGGTG
AGCGATGGTGATTGGTGGTGCGGCCATTGCTACCAGAGCCGGTTGAACGG
CATGAAGAGAGACGACAAACCGACAGAGTATCCAGCGAACAGGTCATGTG
GATCGGGGGACGAGGCGCCGACGCTTCTAGAGCCTTCGAGCACGGTGCGC
AGGATGATGGATGACGTCCTCGGTCGAGGTGAGATCCTTTGCTGGCAGAA
CGTCGCCGGTTGGCTAGCTGCTGAACGCGCGAAGGTTGGCATGGGGGAGA
TAACGGGGAAGTACGCACGACAACTCGTCCTGGACTTGTTTA
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Coding sequence (CDS) from alignment at Scaffold_106:84640..86981+

>EsuBft3135_3a-0001 ID=EsuBft3135_3a-0001|Name=EsuBft3135_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_106:84640..86981+ (Ectocarpus subulatus male Bft15b)
ATGCTTATCAACAAAACCAGCAAAAGACCGACGATGGCCCGCGTCGGCGG
TGGGTGGTGGTGGTGCTGCTGTATCTCGTCGCTGGATGCTCTGATTGCGA
CGCTGAAGTGCTCAAGCGAAAACTCGGGTCTCTCCCAGTGCTGCACGACT
GAAAAAAAACACAAGGTGGGCCAGCAGGCTTGTGAGGTGAACAGCCCCAC
AGCTCTACCAGGAAACGGAGGAGGAAGAGGAGACCCTCTGNTCGGTGCAC
GTGCCCGTCGAACGGGAGGAATGACCCGGTCGGGCAGGAAACGGAGGAGG
AAGAGCCAACGCCCAGACTACTTCCTAGCTATTTTCGCCGAGAAAGAAAG
GAAGGCAGAGTTTCGCCAATGCAGTAAATGCAAGTACCGGAAATCGGACA
GGAGCCGCGTAAGGTGGTATCCCATGGATGCTGCAGGAGATCATGTCGCG
GAGGGTAATGCGATGGTGAGTGATGGTGATTGGTGGTGCGGCCGTTGCTA
CCAGAGCCGGTTGAACGGCATGAAGAGAGACGACAAACCGACAGAGGAAC
AAGCGGGGGACGAGGCGCNGCGCCGACGCTTCTAG
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