EsuBft3135_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3135_2a-0001
Unique Name	EsuBft3135_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:77875..80522 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LN28
ProteomeId	EsuBft3135_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	264
Evalue	1.89e-37
EggNOG OGs	2CZS4@1\|root,2SBGG@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	DDE superfamily endonuclease
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3135_2a	EsuBft3135_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 77875..80522 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3135_2a-0001-exon	EsuBft3135_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 77875..80522 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3135_2a-0001-exon	agat-three_prime_utr-12401	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 77875..79955 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3135_2a-0001-cds	EsuBft3135_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 79956..80522 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3135_2a-0001	EsuBft3135_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 79956..80522 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:77875..80522-
coding sequence from alignment at Scaffold_106:77875..80522-

spliced messenger RNA

>EsuBft3135_2a-0001 ID=EsuBft3135_2a-0001|Name=EsuBft3135_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2648bp|location=Sequence derived from alignment at Scaffold_106:77875..80522- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCCAACAGCAATGTTCGCAGACTCACGAACAGCTTTTGGAACCTT
CAAGAAGGAGGTGAGTAAAGTGCTGCAAGACTACTACCACGCAAACGGCG
GGTTGTTACCGCTGAAGCGTGACGTGCCCGGCGTGATCGCGGCGGCTTGG
CAAAAGAGCTTGACACCGGAGCGGAACAAAGCATCCTTCGGCGGGGCGGG
GCTGTGGNGGGCGGGGCTGTGGCCTGTGGACATGGATCGAGCGCTGACCC
GGCTTCAGGGCACGGCGAAGAGGAAAGAGGGACCGACCGGGCGCCCACCC
CTAGAGGACGTCCCCATCGCCATGTCCCACGAGCAGCTGGAAGAGGCCAT
CGGAGAGAGGGGCCTGAGGCAGTTGAAGGCGGGAGGACATACCATTACCG
GACTCAAGGTAGGCACGGTGATGCTCGGCGGTCTCTTGACTCAGAGGAAG
TGCGCCAAGAAACTGGCTCTTTGGGCCTTCCCGACGGAGGCAACATCAAC
TCGGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGCGCAGACAAGGC
AGAGACCGAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNCGAGAGAGATGACCAACCCATTACATTTGAACACACGAACACCCAC
ATATCGGTGATGGAACCTCAACCACACGCCTTACCTACGACCGACCACGT
CAGGAGGCAATGATGAAAGAATGTTCTCCCGTGCCCTTCGCACATTTATG
GGCATGAAATTACACAAAACTGGGAGACCACTCCCGTGTGCCGCACAATT
TGACACAGATGCATGCATATGCATACCAAACTCAATTACTTACCAAATCA
TATTCCTCGCGTTAAATGCATACCAAACTGGAAATACACGTGTAAAATGG
ATGGAGATCCACAACCAACAGGGTGCCACACATAAAACACCCGACTAACT
AACAGCCCAACACTTTTCGTCTACACCTTCCCAACATAACATATATAAGA
CACACAACACAGCTACCAAACTGTCTTGTTGAGCCTGTTATCCGCAGGGG
AGATGTCCATATATGCTGTCTGGGAAATCGTGGACACACAACAGGTAGTT
TTCTTTGACGCTATGATTCCATTGCTAATCTGTCTTTGACTCTTTTCTCT
GACGGAGATGGACTCGTTGTGTTGTATTTGGAAAAATAAAAAAAAAAA

protein sequence of EsuBft3135_2a-0001

>EsuBft3135_2 ID=EsuBft3135_2|Name=EsuBft3135_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=189bp
MYPTAMFADSRTAFGTFKKEVSKVLQDYYHANGGLLPLKRDVPGVIAAAW
QKSLTPERNKASFGGAGLWXAGLWPVDMDRALTRLQGTAKRKEGPTGRPP
LEDVPIAMSHEQLEEAIGERGLRQLKAGGHTITGLKVGTVMLGGLLTQRK
CAKKLALWAFPTEATSTRKNSWQRLTQRNAQTRQRPRRX

mRNA from alignment at Scaffold_106:77875..80522-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3135_2a-0001 ID=EsuBft3135_2a-0001|Name=EsuBft3135_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2648bp|location=Sequence derived from alignment at Scaffold_106:77875..80522- (Ectocarpus subulatus male Bft15b)
ATGTATCCAACAGCAATGTTCGCAGACTCACGAACAGCTTTTGGAACCTT
CAAGAAGGAGGTGAGTAAAGTGCTGCAAGACTACTACCACGCAAACGGCG
GGTTGTTACCGCTGAAGCGTGACGTGCCCGGCGTGATCGCGGCGGCTTGG
CAAAAGAGCTTGACACCGGAGCGGAACAAAGCATCCTTCGGCGGGGCGGG
GCTGTGGNGGGCGGGGCTGTGGCCTGTGGACATGGATCGAGCGCTGACCC
GGCTTCAGGGCACGGCGAAGAGGAAAGAGGGACCGACCGGGCGCCCACCC
CTAGAGGACGTCCCCATCGCCATGTCCCACGAGCAGCTGGAAGAGGCCAT
CGGAGAGAGGGGCCTGAGGCAGTTGAAGGCGGGAGGACATACCATTACCG
GACTCAAGGTAGGCACGGTGATGCTCGGCGGTCTCTTGACTCAGAGGAAG
TGCGCCAAGAAACTGGCTCTTTGGGCCTTCCCGACGGAGGCAACATCAAC
TCGGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGCGCAGACAAGGC
AGAGACCGAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNCGAGAGAGATGACCAACCCATTACATTTGAACACACGAACACCCAC
ATATCGGTGATGGAACCTCAACCACACGCCTTACCTACGACCGACCACGT
CAGGAGGCAATGATGAAAGAATGTTCTCCCGTGCCCTTCGCACATTTATG
GGCATGAAATTACACAAAACTGGGAGACCACTCCCGTGTGCCGCACAATT
TGACACAGATGCATGCATATGCATACCAAACTCAATTACTTACCAAATCA
TATTCCTCGCGTTAAATGCATACCAAACTGGAAATACACGTGTAAAATGG
ATGGAGATCCACAACCAACAGGGTGCCACACATAAAACACCCGACTAACT
AACAGCCCAACACTTTTCGTCTACACCTTCCCAACATAACATATATAAGA
CACACAACACAGCTACCAAACTGTCTTGTTGAGCCTGTTATCCGCAGGGG
AGATGTCCATATATGCTGTCTGGGAAATCGTGGACACACAACAGGTAGTT
TTCTTTGACGCTATGATTCCATTGCTAATCTGTCTTTGACTCTTTTCTCT
GACGGAGATGGACTCGTTGTGTTGTATTTGGAAAAATAAAAAAAAAAA

Coding sequence (CDS) from alignment at Scaffold_106:77875..80522-

>EsuBft3135_2a-0001 ID=EsuBft3135_2a-0001|Name=EsuBft3135_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=567bp|location=Sequence derived from alignment at Scaffold_106:77875..80522- (Ectocarpus subulatus male Bft15b)
ATGTATCCAACAGCAATGTTCGCAGACTCACGAACAGCTTTTGGAACCTT
CAAGAAGGAGGTGAGTAAAGTGCTGCAAGACTACTACCACGCAAACGGCG
GGTTGTTACCGCTGAAGCGTGACGTGCCCGGCGTGATCGCGGCGGCTTGG
CAAAAGAGCTTGACACCGGAGCGGAACAAAGCATCCTTCGGCGGGGCGGG
GCTGTGGNGGGCGGGGCTGTGGCCTGTGGACATGGATCGAGCGCTGACCC
GGCTTCAGGGCACGGCGAAGAGGAAAGAGGGACCGACCGGGCGCCCACCC
CTAGAGGACGTCCCCATCGCCATGTCCCACGAGCAGCTGGAAGAGGCCAT
CGGAGAGAGGGGCCTGAGGCAGTTGAAGGCGGGAGGACATACCATTACCG
GACTCAAGGTAGGCACGGTGATGCTCGGCGGTCTCTTGACTCAGAGGAAG
TGCGCCAAGAAACTGGCTCTTTGGGCCTTCCCGACGGAGGCAACATCAAC
TCGGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGCGCAGACAAGGC
AGAGACCGAGGCGNNNN