EsuBft1938_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1938_3a-0001
Unique Name	EsuBft1938_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:62212..63601 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FIA9
ProteomeId	EsuBft1938_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	110
Hectar predicted targeting category	other localisation
Evalue	1.99e-12
EggNOG OGs	2D5KK@1\|root,2SYVY@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1938_3a	EsuBft1938_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 62212..63601 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1938_3a-0001-exon	EsuBft1938_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 62212..63136 +
EsuBft1938_3a-0001-exon	agat-exon-48892	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 63420..63601 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1938_3a-0001-cds	EsuBft1938_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 62212..63136 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1938_3a-0001	EsuBft1938_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 62212..63601 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:62212..63601+
coding sequence from alignment at Scaffold_106:62212..63601+

spliced messenger RNA

>EsuBft1938_3a-0001 ID=EsuBft1938_3a-0001|Name=EsuBft1938_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1107bp|location=Sequence derived from alignment at Scaffold_106:62212..63601+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGAAGAAGTCCTCCGTCGAGGTGAGATCCTGTACTGGCAGGACGT
CGCCGAGTGGGTAACAGCGGAACGCGCGAAGGTTGACATGGAGGAGTTAC
AAGGGAGATACCCAAGAAAAATCGTCCGGGCCTTGTTTTCAAGCATCGAG
GAGTCCGGGACTTCACGCTTGGTCAGTCAAGAGCCAGCACAAGGAGACGC
ACGCGAGCGGGAACTCTTCCTCTTCCCAAAAACCCTTGGGGACGAGCATC
TCGTTGACTTAATGCTGCGTGCTCGCCGTAATGCACCCGTACAGCCACCA
CCCAGCCAGCTAGCGGAAAAGGGCGGGTCTCTCAAGTCGATCCTGGAGCA
AGTCGACAAGGACAAGGAGGACGCAGACGCAAGGATGTCCGTCGTGCGGG
CAGCTGGTAGAATTGTTCGAGCCGACGTGGCGAGTGAGCCTGCCCTGAAG
AACACCCCCGGGACACGCGAGAAGCATCGCTACGCCGATGAGTTGGACAT
GAAAGTAAAGCAACCCAGAGAGACTCTGCTATCTGCGTTTCCTCCGGCCT
TGGTTGGGTTATACCAAAGCATGACGGACATGGCACTGTATCGCGAGATC
ATCGCATCGGAGACCGAACATCCTCGAAAGCCCTGGGTATGGGAGACCGC
AGGGCGAGACGGACGGCACCCTACCACCTCGGGCGACTCGGAGGGCGAGG
ACGGTGATGGAGAAAAGAAGAACGACGTCAGTCAAGGAGAAGTGACAGTG
TCGTTAGGGCCACGAACCGAGGAACAGGCCAGGCATATCGACAGCCTTAA
CCGCGGTAGGCGATCTACGCATCGTAGGCTTCTATTGATGTGTACGGTGG
TGGTGAAGGCAATTTTGTGTGGTCGGCACATGGGTTCGCACAACATCAAA
GGGGCTCAGTGGGCAAAGTCTAGGGGAGCCGGGGATCTCTTACGGTGGAG
GACGTCATTCTGGGGCCGGAGCGGGACCGGGAGGACGGAGCACGGCGGTA
TAACGAGTTTCCGGCGGAACTCTACCGCGGCGTATTCACTGAGGCGCGGA
ACAACTCCGACAGGTCTGCGGCAGACACATGCGTCGAGTCTGAACTCCGC
AAGGTAA

protein sequence of EsuBft1938_3a-0001

>EsuBft1938_3 ID=EsuBft1938_3|Name=EsuBft1938_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=368bp
MVEEVLRRGEILYWQDVAEWVTAERAKVDMEELQGRYPRKIVRALFSSIE
ESGTSRLVSQEPAQGDARERELFLFPKTLGDEHLVDLMLRARRNAPVQPP
PSQLAEKGGSLKSILEQVDKDKEDADARMSVVRAAGRIVRADVASEPALK
NTPGTREKHRYADELDMKVKQPRETLLSAFPPALVGLYQSMTDMALYREI
IASETEHPRKPWVWETAGRDGRHPTTSGDSEGEDGDGEKKNDVSQGEVTV
SLGPRTEEQARHIDSLNRGRRSTHRRLLLMCTVVVKAILCGRHMGSHNIK
GAQWAKSRGAGDLLRWRTSFWGRSGTGRTEHGGITSFRRNSTAAYSLRRG
TTPTGLRQTHASSLNSAR

mRNA from alignment at Scaffold_106:62212..63601+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1938_3a-0001 ID=EsuBft1938_3a-0001|Name=EsuBft1938_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1390bp|location=Sequence derived from alignment at Scaffold_106:62212..63601+ (Ectocarpus subulatus male Bft15b)
ATGGTGGAAGAAGTCCTCCGTCGAGGTGAGATCCTGTACTGGCAGGACGT
CGCCGAGTGGGTAACAGCGGAACGCGCGAAGGTTGACATGGAGGAGTTAC
AAGGGAGATACCCAAGAAAAATCGTCCGGGCCTTGTTTTCAAGCATCGAG
GAGTCCGGGACTTCACGCTTGGTCAGTCAAGAGCCAGCACAAGGAGACGC
ACGCGAGCGGGAACTCTTCCTCTTCCCAAAAACCCTTGGGGACGAGCATC
TCGTTGACTTAATGCTGCGTGCTCGCCGTAATGCACCCGTACAGCCACCA
CCCAGCCAGCTAGCGGAAAAGGGCGGGTCTCTCAAGTCGATCCTGGAGCA
AGTCGACAAGGACAAGGAGGACGCAGACGCAAGGATGTCCGTCGTGCGGG
CAGCTGGTAGAATTGTTCGAGCCGACGTGGCGAGTGAGCCTGCCCTGAAG
AACACCCCCGGGACACGCGAGAAGCATCGCTACGCCGATGAGTTGGACAT
GAAAGTAAAGCAACCCAGAGAGACTCTGCTATCTGCGTTTCCTCCGGCCT
TGGTTGGGTTATACCAAAGCATGACGGACATGGCACTGTATCGCGAGATC
ATCGCATCGGAGACCGAACATCCTCGAAAGCCCTGGGTATGGGAGACCGC
AGGGCGAGACGGACGGCACCCTACCACCTCGGGCGACTCGGAGGGCGAGG
ACGGTGATGGAGAAAAGAAGAACGACGTCAGTCAAGGAGAAGTGACAGTG
TCGTTAGGGCCACGAACCGAGGAACAGGCCAGGCATATCGACAGCCTTAA
CCGCGGTAGGCGATCTACGCATCGTAGGCTTCTATTGATGTGTACGGTGG
TGGTGAAGGCAATTTTGTGTGGTCGGCACATGGGTTCGCACAACATCAAA
GGGGCTCAGTGGGCAAAGTCTAGGGGTACGTGTCGCGATGTGATCAACTT
TGTAGCGGAGCACGGTTTGTGGGCGACGACGTCGCATATTCAGCGCCGAG
AAGATTTCCACGCGAGCTTCGTAGAGGACAAGGACCTTCTGAGCAAGGAA
GCCGAATGCGCCCCCATTCCCCTCGGCAACTGTGATTGTGATTTTGACCC
GAGGGTCGGAGTTGGCCAGGGGGAGGGGCCTCATCTTCCTTTTATCGCTG
CGACGGCCTTGACGGTAGGGCCCGACGTAGGTCGAATGGACGACTGGTGG
TTGGTAAGGAGCCGGGGATCTCTTACGGTGGAGGACGTCATTCTGGGGCC
GGAGCGGGACCGGGAGGACGGAGCACGGCGGTATAACGAGTTTCCGGCGG
AACTCTACCGCGGCGTATTCACTGAGGCGCGGAACAACTCCGACAGGTCT
GCGGCAGACACATGCGTCGAGTCTGAACTCCGCAAGGTAA

Coding sequence (CDS) from alignment at Scaffold_106:62212..63601+

>EsuBft1938_3a-0001 ID=EsuBft1938_3a-0001|Name=EsuBft1938_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1107bp|location=Sequence derived from alignment at Scaffold_106:62212..63601+ (Ectocarpus subulatus male Bft15b)
ATGGTGGAAGAAGTCCTCCGTCGAGGTGAGATCCTGTACTGGCAGGACGT
CGCCGAGTGGGTAACAGCGGAACGCGCGAAGGTTGACATGGAGGAGTTAC
AAGGGAGATACCCAAGAAAAATCGTCCGGGCCTTGTTTTCAAGCATCGAG
GAGTCCGGGACTTCACGCTTGGTCAGTCAAGAGCCAGCACAAGGAGACGC
ACGCGAGCGGGAACTCTTCCTCTTCCCAAAAACCCTTGGGGACGAGCATC
TCGTTGACTTAATGCTGCGTGCTCGCCGTAATGCACCCGTACAGCCACCA
CCCAGCCAGCTAGCGGAAAAGGGCGGGTCTCTCAAGTCGATCCTGGAGCA
AGTCGACAAGGACAAGGAGGACGCAGACGCAAGGATGTCCGTCGTGCGGG
CAGCTGGTAGAATTGTTCGAGCCGACGTGGCGAGTGAGCCTGCCCTGAAG
AACACCCCCGGGACACGCGAGAAGCATCGCTACGCCGATGAGTTGGACAT
GAAAGTAAAGCAACCCAGAGAGACTCTGCTATCTGCGTTTCCTCCGGCCT
TGGTTGGGTTATACCAAAGCATGACGGACATGGCACTGTATCGCGAGATC
ATCGCATCGGAGACCGAACATCCTCGAAAGCCCTGGGTATGGGAGACCGC
AGGGCGAGACGGACGGCACCCTACCACCTCGGGCGACTCGGAGGGCGAGG
ACGGTGATGGAGAAAAGAAGAACGACGTCAGTCAAGGAGAAGTGACAGTG
TCGTTAGGGCCACGAACCGAGGAACAGGCCAGGCATATCGACAGCCTTAA
CCGCGGTAGGCGATCTACGCATCGTAGGCTTCTATTGATGTGTACGGTGG
TGGTGAAGGCAATTTTGTGTGGTCGGCACATGGGTTCGCACAACATCAAA
GGGGCTCAGTGGGCAAAGTCTAGGGGAGCCGGGGATCTCTTACGGTGGAG
GACGTCATTCTGGGGCCGGAGCGGGACCGGGAGGACGGAGCACGGCGGTA
TAACGAGTTTCCGGCGGAACTCTACCGCGGCGTATTCACTGAGGCGCGGA
ACAACTCCGACAGGTCTGCGGCAGACACATGCGTCGAGTCTGAACTCCGC
AAGGTAA