Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7029.ACYPI088512-PA |
| ProteomeId | EsuBft1938_4 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 33208|Metazoa |
| Length | 2175 |
| Evalue | 3.88e-48 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
| GO | 0097159 |
| GO | 1901363 |
| GO | 0044424 |
| GO | 0090304 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1938_4a-0001 ID=EsuBft1938_4a-0001|Name=EsuBft1938_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2175bp|location=Sequence derived from alignment at Scaffold_106:53678..56599- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TCCAACCCAGAGAAGAAGTCGCCGTACGAGATGTGGCACGGGCACCCTCG
CCAGCCGGGGGCGACGTACCCGTTCCTCAAACCTGCCGTATACAAGGCGA
TCACAGCTCGCAACTTCACCTGGCAATCCGTACCCGCTGCCCCCACCGCC
CTGCCCCAGTCGCCGCCTCCCATCGCAGAGGAGGAAGAGGAATTCGCGAC
TGGGGAGGACGAGGTTGGGGAGGGCGCGTCCCCGTTCCTCAAACCTGCCG
TATACAAGGTCAAGCGCACGCACAAGTCCGAGCCGAAAGCCCAAAAGTGT
TCTTGCCTCGGCCCGGGAATCAACACCAACCGTGATTGCGTGCGCATCTT
GAACGAAAAACGCCAAGCGATCACAGCTCTCACCTGGCAATCCGTACCCG
CTGCCCCCACCGCCCTGCCCCGGTCGCTGCCTCCCATCGCAGAGGAGGAA
GAGGAATTCGCGACTGGGGAGGACGAGGTTGGGGAGGGCGCGTCGAGCCA
AGGTGGAGGGAGGGCGGAGGGAGAACCCGTGGATGGAGGACCAGGTTTCA
ANACCCCCTCGAGCAGTGAGGGCGCGAGCGTCGCTCCATCTGCCACGTCG
GCCAGCATGGCCGATGTGGGCGGCGGCGAGGACGACCGTCGCAACAGCAG
CCGCCGCTGTAGCGGCGGCAGCGGCAGCGGCAGCAACAGTGGCAGCACCA
GCGGCAGCGGCAGCGACAGCGACAGCGACAGCGAGATGGATCTCCCAGCG
CTCCGCGGGCCAGAGGCCTGGCGGCTCGCCCGCTTCGACAAGCCGGCGGG
ACTCACCAGCCGCCGCATCAGGGAGAACCCTCGCCGACATCCGAGGGCGG
TGCGAGAGTTGCTGTTCGAGCGCGCGGAGGAGGCCCACCCTGTGCGCCAA
GAGGCGGAGGACTTCCTGCTGGGTGCGGTGGGCCTCATGCTCAACTCGCC
AGACGCCTTCGAGACGGCTCTGGCGTCCCTCGAGCTAAGTGAATTCCCCA
TTGGCAAGCGTCCGAGTGATGTAGAACCCCCCGCCATGACCGTAGCCGGC
GTTGTTAAGTCTGTGTACAGAGAGGGGTGGGAACAGGCCATGAGGGAAGA
GTGTGAATGGCACTTGGGCACGGGGACATTTTCATTCATAGACGGCGCGC
CAGAGGGGCACAGGCCTTGGGGGTACCACGCTGCTGAGACGCTAGTCGAG
AACGGGTTCGAGCAGTGCGAGGCGGACCCGTGTATTTTCCGCAAGATGGT
AGATGAAGTCGTGGTGATGATTCTCGTGATCTACGTGGATGACATTTTGG
TGGCTGGGTCTGACGAGGATTGCGAGGAGTTGCTTCCTTCTCTTCAACAA
GAAATTTCCCACCAAAAACTTGGAGAATGCGAATGGTTTGACGGGTGCGC
CACTGAGAGAGATGTAGAGGCTGGGACTCTTAGAATCTCCCAAACCGCGT
ACATTGATAGCATGGTGAAACGCTTTGATGTACAATCGACCTCCCGCATC
CCTGCTTCCCCTAGTGTCGACCTAGGACCGGAGCGAGACGACGAGAAGGG
TGGGAAGTGCCCGGTGAGGGAGGCCATCGGCAGCATGATGTGTGTGTCGA
CGTTCTCGCGTCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGTGCCAT
GCCCACGCCCCGGCGAAGAGGCACTGGGATGCCATCCAGAAGATCCTCGG
CTACTTGAAGGAGACGAGGGACGTCGGCATCACCTACAAACGAGGATCGG
GGTTAGAGCTGGCCGTGTACGTAGACGCTAGCTACGCTGACACGGAGAAT
AGGCGTTCGGTGTCAGGGTTGGCGACGATGGTTGGAGGTACCGTAGTCAG
CCATGGTAGCAAGACAAAGAGCATCGTGTCTTTGTCTTCGACGGAAGCCA
AATACATAGCTGCCGGGGAGGGCGTCAAGGAGGCGTTCATCCAGGTCCTT
GAGGACAACCAGGGGGGCATAGAGTTGGTGCAGAACCCCCTCAGCTCAGG
TCGCACGAAACACATCGACGTGAGATTTCATTTCATCCGCGGATTGTTTA
GGTCGGGGGATATTTCGGTCAAGTTTGTTCCGACAACGGAGCAACACGCG
GACCTCCTAACCAAGGCCCGTAGCAGGGATAGTCTGCAGTACCACCGGCG
CAAGTTGATGAATTTGCCGGTGTAG back to topprotein sequence of EsuBft1938_4a-0001 >EsuBft1938_4 ID=EsuBft1938_4|Name=EsuBft1938_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=714bp
MWHGHPRQPGATYPFLKPAVYKAITARNFTWQSVPAAPTALPQSPPPIAE
EEEEFATGEDEVGEGASPFLKPAVYKVKRTHKSEPKAQKCSCLGPGINTN
RDCVRILNEKRQAITALTWQSVPAAPTALPRSLPPIAEEEEEFATGEDEV
GEGASSQGGGRAEGEPVDGGPGFXTPSSSEGASVAPSATSASMADVGGGE
DDRRNSSRRCSGGSGSGSNSGSTSGSGSDSDSDSEMDLPALRGPEAWRLA
RFDKPAGLTSRRIRENPRRHPRAVRELLFERAEEAHPVRQEAEDFLLGAV
GLMLNSPDAFETALASLELSEFPIGKRPSDVEPPAMTVAGVVKSVYREGW
EQAMREECEWHLGTGTFSFIDGAPEGHRPWGYHAAETLVENGFEQCEADP
CIFRKMVDEVVVMILVIYVDDILVAGSDEDCEELLPSLQQEISHQKLGEC
EWFDGCATERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPASPSVDLGP
ERDDEKGGKCPVREAIGSMMCVSTFSRPDVSFAVRAVACHAHAPAKRHWD
AIQKILGYLKETRDVGITYKRGSGLELAVYVDASYADTENRRSVSGLATM
VGGTVVSHGSKTKSIVSLSSTEAKYIAAGEGVKEAFIQVLEDNQGGIELV
QNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKARSRD
SLQYHRRKLMNLPV back to topmRNA from alignment at Scaffold_106:53678..56599- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1938_4a-0001 ID=EsuBft1938_4a-0001|Name=EsuBft1938_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2922bp|location=Sequence derived from alignment at Scaffold_106:53678..56599- (Ectocarpus subulatus male Bft15b)
TCCAACCCAGAGAAGAAGTCGCCGTACGAGATGTGGCACGGGCACCCTCG
CCAGCCGGGGGCGACGTACCCGTTCCTCAAACCTGCCGTATACAAGGTCA
AGCGCACGCACAAGTCCGAGCCGAAAGCCCAAAAGTGTTCTTGCCTCGGC
CCGGGAATCAACACCAACCGTGATTGCGTGCGCATCTTGAACGAAAAACG
CCAAGCGATCACAGCTCTCACCTGGCAATCCGTACCCGCTGCCCCNATTT
TGCCTCGGCCCGGGAACGAACACCAACCGTGATTGCGTGCGCATCTTGAA
CGAAAAACGCCAGGCGATCACAGCTCGCAACTTCACCTGGCAATCCGTAC
CCGCTGCCCCCACCGCCCTGCCCCAGTCGCCGCCTCCCATCGCAGAGGAG
GAAGAGGAATTCGCGACTGGGGAGGACGAGGTTGGGGAGGGCGCGTCCCC
GTTCCTCAAACCTGCCGTATACAAGGTCAAGCGCACGCACAAGTCCGAGC
CGAAAGCCCAAAAGTGTTCTTGCCTCGGCCCGGGAATCAACACCAACCGT
GATTGCGTGCGCATCTTGAACGAAAAACGCCAAGCGATCACAGCTCTCAC
CTGGCAATCCGTACCCGCTGCCCCCACCGCCCTGCCCCGGTCGCTGCCTC
CCATCGCAGAGGAGGAAGAGGAATTCGCGACTGGGGAGGACGAGGTTGGG
GAGGGCGCGTCGAGCCAAGGTGGAGGGAGGGCGGAGGGAGAACCCGTGGA
TGGAGGACCAGGTTTCAANACCCCCTCGAGCAGTGAGGGCGCGAGCGTCG
CTCCATCTGCCACGTCGGCCAGCATGGCCGATGTGGGCGGCGGCGAGGAC
GACCGTCGCAACAGCAGCCGCCGCTGTAGCGGCGGCAGCGGCAGCGGCAG
CAACAGTGGCAGCACCAGCGGCAGCGGCAGCGACAGCGACAGCGACAGCG
AGATGGATCTCCCAGCGCTCCGCGGGCCAGAGGCCTGGCGGCTCGCCCGC
TTCGACAAGCCGGCGGGACTCACCAGCCGCCGCATCAGGGAGAACCCTCG
CCGACATCCGAGGTACGAGTCGTCCCCGTCGCCGACAAGTGCCGAAGCCC
TGCTCGCTTCGGCGGCGAGCCTGCCCGTCAGCAGCACGGAGGAGTTCACC
AGCTGAATGCTCTCGGCGGTACTTCACGTGGCGGAAGGGCTAGAGGCAAG
GGCGGTGCGAGAGTTGCTGTTCGAGCGCGCGGAGGAGGCCCACCCTGTGC
GCCAAGAGGCGGAGGACTTCCTGCTGGGTGCGGTGGGCCTCATGCTCAAC
TCGCCAGACGCCTTCGAGACGGCTCTGGCGTCCCTCGAGCTAAGTGAATT
CCCCATTGGCAAGCGTCCGAGTGATGTAGAACCCCCCGCCATGACCGTAG
CCGGCGTTGTTAAGTCTGTGTACAGAGAGGGGTGGGAACAGGCCATGAGG
GAAGAGTGTGAATGGCACTTGGGCACGGGGACATTTTCATTCATAGACGG
CGCGCCAGAGGGGCACAGGCCTGTGAGCTCAAAGTGGTGTTTTTGTTGGA
ACACCAACAAGGAAGGGGAGATAGAAAAGTTCAAAGCGCGTCTGGTTGCT
AGGGAGTCTTCGCAAATCCCGAACGTCGATTGTTTCCATCCGTCTTCCCC
TTGCCCATCATCCGCATCCATTAAACTGATGCTTGCGGTAGCAAACGAGA
AGGGCATGAACCTCAAATCACTGGGATGTGAAGCAGGCGTACACACAAGC
CACGCTAGACGAGGAGGTTTTTCTGAGGCTCCCCTCTGGGTGCAGGGACA
AATCGCATAAGATTCTTAAGGCCGAGCGTTCGATTTACGGTCTGAAGCGG
AGCGGTAGGTAGTGGGGGTACCACGCTGCTGAGACGCTAGTCGAGAACGG
GTTCGAGCAGTGCGAGGCGGACCCGTGTATTTTCCGCAAGATGGTAGATG
AAGTCGTGGTGATGATTCTCGTGATCTACGTGGATGACATTTTGGTGGCT
GGGTCTGACGAGGATTGCGAGGAGTTGCTTCCTTCTCTTCAACAAGAAAT
TTCCCACCAAAAACTTGGAGAATGCGAATGGTTTGACGGGTGCGCCACTG
AGAGAGATGTAGAGGCTGGGACTCTTAGAATCTCCCAAACCGCGTACATT
GATAGCATGGTGAAACGCTTTGATGTACAATCGACCTCCCGCATCCCTGC
TTCCCCTAGTGTCGACCTAGGACCGGAGCGAGACGACGAGAAGGGTGGGA
AGTGCCCGGTGAGGGAGGCCATCGGCAGCATGATGTGTGTGTCGACGTTC
TCGCGTCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGTGCCATGCCCA
CGCCCCGGCGAAGAGGCACTGGGATGCCATCCAGAAGATCCTCGGCTACT
TGAAGGAGACGAGGGACGTCGGCATCACCTACAAACGAGGATCGGGGTTA
GAGCTGGCCGTGTACGTAGACGCTAGCTACGCTGACACGGAGAATAGGCG
TTCGGTGTCAGGGTTGGCGACGATGGTTGGAGGTACCGTAGTCAGCCATG
GTAGCAAGACAAAGAGCATCGTGTCTTTGTCTTCGACGGAAGCCAAATAC
ATAGCTGCCGGGGAGGGCGTCAAGGAGGCGTTGTTTGTGCGTGCTGTGCT
TTCGTTTTGTTGCCCCAGAGACCAGTGGTAGCAGCATCCAGGTCCTTGAG
GACAACCAGGGGGGCATAGAGTTGGTGCAGAACCCCCTCAGCTCAGGTCG
CACGAAACACATCGACGTGAGATTTCATTTCATCCGCGGATTGTTTAGGT
CGGGGGATATTTCGGTCAAGTTTGTTCCGACAACGGAGCAACACGCGGAC
CTCCTAACCAAGGCCCGTAGCAGGGATAGTCTGCAGTACCACCGGCGCAA
GTTGATGAATTTGCCGGTGTAG back to topCoding sequence (CDS) from alignment at Scaffold_106:53678..56599- >EsuBft1938_4a-0001 ID=EsuBft1938_4a-0001|Name=EsuBft1938_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2145bp|location=Sequence derived from alignment at Scaffold_106:53678..56599- (Ectocarpus subulatus male Bft15b)
ATGTGGCACGGGCACCCTCGCCAGCCGGGGGCGACGTACCCGTTCCTCAA
ACCTGCCGTATACAAGGCGATCACAGCTCGCAACTTCACCTGGCAATCCG
TACCCGCTGCCCCCACCGCCCTGCCCCAGTCGCCGCCTCCCATCGCAGAG
GAGGAAGAGGAATTCGCGACTGGGGAGGACGAGGTTGGGGAGGGCGCGTC
CCCGTTCCTCAAACCTGCCGTATACAAGGTCAAGCGCACGCACAAGTCCG
AGCCGAAAGCCCAAAAGTGTTCTTGCCTCGGCCCGGGAATCAACACCAAC
CGTGATTGCGTGCGCATCTTGAACGAAAAACGCCAAGCGATCACAGCTCT
CACCTGGCAATCCGTACCCGCTGCCCCCACCGCCCTGCCCCGGTCGCTGC
CTCCCATCGCAGAGGAGGAAGAGGAATTCGCGACTGGGGAGGACGAGGTT
GGGGAGGGCGCGTCGAGCCAAGGTGGAGGGAGGGCGGAGGGAGAACCCGT
GGATGGAGGACCAGGTTTCAANACCCCCTCGAGCAGTGAGGGCGCGAGCG
TCGCTCCATCTGCCACGTCGGCCAGCATGGCCGATGTGGGCGGCGGCGAG
GACGACCGTCGCAACAGCAGCCGCCGCTGTAGCGGCGGCAGCGGCAGCGG
CAGCAACAGTGGCAGCACCAGCGGCAGCGGCAGCGACAGCGACAGCGACA
GCGAGATGGATCTCCCAGCGCTCCGCGGGCCAGAGGCCTGGCGGCTCGCC
CGCTTCGACAAGCCGGCGGGACTCACCAGCCGCCGCATCAGGGAGAACCC
TCGCCGACATCCGAGGGCGGTGCGAGAGTTGCTGTTCGAGCGCGCGGAGG
AGGCCCACCCTGTGCGCCAAGAGGCGGAGGACTTCCTGCTGGGTGCGGTG
GGCCTCATGCTCAACTCGCCAGACGCCTTCGAGACGGCTCTGGCGTCCCT
CGAGCTAAGTGAATTCCCCATTGGCAAGCGTCCGAGTGATGTAGAACCCC
CCGCCATGACCGTAGCCGGCGTTGTTAAGTCTGTGTACAGAGAGGGGTGG
GAACAGGCCATGAGGGAAGAGTGTGAATGGCACTTGGGCACGGGGACATT
TTCATTCATAGACGGCGCGCCAGAGGGGCACAGGCCTTGGGGGTACCACG
CTGCTGAGACGCTAGTCGAGAACGGGTTCGAGCAGTGCGAGGCGGACCCG
TGTATTTTCCGCAAGATGGTAGATGAAGTCGTGGTGATGATTCTCGTGAT
CTACGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGCGAGGAGT
TGCTTCCTTCTCTTCAACAAGAAATTTCCCACCAAAAACTTGGAGAATGC
GAATGGTTTGACGGGTGCGCCACTGAGAGAGATGTAGAGGCTGGGACTCT
TAGAATCTCCCAAACCGCGTACATTGATAGCATGGTGAAACGCTTTGATG
TACAATCGACCTCCCGCATCCCTGCTTCCCCTAGTGTCGACCTAGGACCG
GAGCGAGACGACGAGAAGGGTGGGAAGTGCCCGGTGAGGGAGGCCATCGG
CAGCATGATGTGTGTGTCGACGTTCTCGCGTCCAGACGTCTCGTTCGCCG
TGCGTGCGGTAGCGTGCCATGCCCACGCCCCGGCGAAGAGGCACTGGGAT
GCCATCCAGAAGATCCTCGGCTACTTGAAGGAGACGAGGGACGTCGGCAT
CACCTACAAACGAGGATCGGGGTTAGAGCTGGCCGTGTACGTAGACGCTA
GCTACGCTGACACGGAGAATAGGCGTTCGGTGTCAGGGTTGGCGACGATG
GTTGGAGGTACCGTAGTCAGCCATGGTAGCAAGACAAAGAGCATCGTGTC
TTTGTCTTCGACGGAAGCCAAATACATAGCTGCCGGGGAGGGCGTCAAGG
AGGCGTTCATCCAGGTCCTTGAGGACAACCAGGGGGGCATAGAGTTGGTG
CAGAACCCCCTCAGCTCAGGTCGCACGAAACACATCGACGTGAGATTTCA
TTTCATCCGCGGATTGTTTAGGTCGGGGGATATTTCGGTCAAGTTTGTTC
CGACAACGGAGCAACACGCGGACCTCCTAACCAAGGCCCGTAGCAGGGAT
AGTCTGCAGTACCACCGGCGCAAGTTGATGAATTTGCCGGTGTAG back to top
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