EsuBft1323_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1323_4a-0001
Unique Name	EsuBft1323_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:31236..36574 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1323_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	140
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_4a	EsuBft1323_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 31236..36574 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_4a-0001	EsuBft1323_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 31258..31473 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_4a-0001-exon	EsuBft1323_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 31236..32249 +
EsuBft1323_4a-0001-exon	agat-exon-50618	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 36187..36574 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_4a-0001-exon	agat-five_prime_utr-1966	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_106 31236..31257 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_4a-0001-cds	EsuBft1323_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 31258..31473 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_4a-0001-exon	agat-three_prime_utr-2990	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 31474..32249 +
EsuBft1323_4a-0001-exon	agat-three_prime_utr-2991	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 36187..36574 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:31236..36574+
coding sequence from alignment at Scaffold_106:31236..36574+

spliced messenger RNA

>EsuBft1323_4a-0001 ID=EsuBft1323_4a-0001|Name=EsuBft1323_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1402bp|location=Sequence derived from alignment at Scaffold_106:31236..36574+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGAAGCTTTTGGCGACCATGTTCGTCTACAAGGATGAAGCGGCGT
TTGACTCTGCTCATTTGACTCCAGCCCAGCTGGTCGAAAGCGTTGACGGC
GACGTCGAGGGCTACGTGGACGTGATCCGCTACGCCATCCTCCGACTCCC
CAAGAAGAAGACGACAGCCACCTGTCCGTTTTTTTTTTCCTTGCGCAAGC
AGGCAGAACGAGGGAACGCCAACTTCCGGTACTGGTAGATTGGCCTGAGG
GAGACCATGCCGGTGACAGAGTTTGCCGGCAAAGGATGGAGCGTCGACCC
ACGAGGAAAGGGGAGCAACGGCGACAAACTCACAAAGAAGAACTGCGTGC
TTGACCTGTCCGAGTATGCTTAGATCGCCCGTGACCGAAAGACAGTCACG
CTAGCGTGTGGTTGCAATCCGAACACGGCCCTGTGCAACAGGTGCAGGTG
CAAGAACAAGAAGTGCTCGCTCGCTTGCGGCTGCAGAAATCGTTGCACCC
TACGGCGGGCGGTGCCGGCACCCGTACGAGCAGGGGGGGGGTCTGCGTCA
CGGCCTACGGTGGGTGCTCCTCAAACGAGGCGGGTAGAGGGTACCTCCCG
ACCCCAACCGCCCACCGAGAGTCGATCACGGCCATCCTACAGTGTTGCCA
ATGCCACGGCACTCTTTGCCGCCTCTATGAGGCAGCAGGTATCGCACGGA
GCGGAACAGAACGACGTGGAGGCGGGAACCCCCGAGTCGCCTGTGAGCAA
CGACGTTTCCGCCGGCGAGGCCGCGGAATCTAAGAACGCAGAGTTGGAGG
ACCCCGAGTCGGACGAGAAGTGCGACGGTTCGGTCGGTGCACTCGACGAT
TTGATCAAGTTGGATTCGAGCGAATCTGACACCAGCGATGGGCAATCTGA
CGGGGTGAGCGAGAAGAGCGTCGACTCCAACTGGTGTGGCGGAGACACAA
ATGATGGTGTTGCGGACCTCGTAACCGACGCCTGGAACTGACATCTGGCT
ACTTCTTCAGGCAGGTCCGTCCGTGCTTTACTTTCGTTGGATGCATCCAT
CCACGAAATACGACGACCCCGGGGTACGAGATATCAGACGGACGAACTCA
GCCTAATACTGAAAAGCCGGCTAGGGCGCGCGTTTCCGCCCGCGGCGAAT
TTTCGTTCCTAGTTGCGCACGTAGTTGCGCAGGGAGGTGGACCGGAGGGG
GGGGTATTATTCTTCTGCCAAGCCGGGTGTCCGTTGTTTATTGACATGGT
ATTTTGTTCTCCGCGTTTTTCCGGAAGACTGCCGGATACCTATTATTGGG
GTGCTGTGTGCGTTGGCCCAGTATTGTGTGCGGTGTTCGTGTGTAAGTGA
TTCCGGCGTTCTCGCCACACCCAACGCTCAGGGCGTCCTCATGTACATCG
AG

protein sequence of EsuBft1323_4a-0001

>EsuBft1323_4 ID=EsuBft1323_4|Name=EsuBft1323_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=71bp
MFVYKDEAAFDSAHLTPAQLVESVDGDVEGYVDVIRYAILRLPKKKTTAT
CPFFFSLRKQAERGNANFRYW

mRNA from alignment at Scaffold_106:31236..36574+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1323_4a-0001 ID=EsuBft1323_4a-0001|Name=EsuBft1323_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5339bp|location=Sequence derived from alignment at Scaffold_106:31236..36574+ (Ectocarpus subulatus male Bft15b)
ATGCGCGAAGCTTTTGGCGACCATGTTCGTCTACAAGGATGAAGCGGCGT
TTGACTCTGCTCATTTGACTCCAGCCCAGCTGGTCGAAAGCGTTGACGGC
GACGTCGAGGGCTACGTGGACGTGATCCGCTACGCCATCCTCCGACTCCC
CAAGAAGAAGACGACAGCCACCTGTCCGTTTTTTTTTTCCTTGCGCAAGC
AGGCAGAACGAGGGAACGCCAACTTCCGGTACTGGTAGATTGGCCTGAGG
GAGACCATGCCGGTGACAGAGTTTGCCGGCAAAGGATGGAGCGTCGACCC
ACGAGGAAAGGGGAGCAACGGCGACAAACTCACAAAGAAGAACTGCGTGC
TTGACCTGTCCGAGTATGCTTAGATCGCCCGTGACCGAAAGACAGTCACG
CTAGCGTGTGGTTGCAATCCGAACACGGCCCTGTGCAACAGGTGCAGGTG
CAAGAACAAGAAGTGCTCGCTCGCTTGCGGCTGCAGAAATCGTTGCACCC
TACGGCGGGCGGTGCCGGCACCCGTACGAGCAGGGGGGGGGTCTGCGTCA
CGGCCTACGGTGGGTGCTCCTCAAACGAGGCGGGTAGAGGGTACCTCCCG
ACCCCAACCGCCCACCGAGAGTCGATCACGGCCATCCTACAGTGTTGCCA
ATGCCACGGCACTCTTTGCCGCCTCTATGAGGCAGCAGGTATCGCACGGA
GCGGAACAGAACGACGTGGAGGCGGGAACCCCCGAGTCGCCTGTGAGCAA
CGACGTTTCCGCCGGCGAGGCCGCGGAATCTAAGAACGCAGAGTTGGAGG
ACCCCGAGTCGGACGAGAAGTGCGACGGTTCGGTCGGTGCACTCGACGAT
TTGATCAAGTTGGATTCGAGCGAATCTGACACCAGCGATGGGCAATCTGA
CGGGGTGAGCGAGAAGAGCGTCGACTCCAACTGGTGTGGCGGAGACACAA
ATGATGGTGTTGCGGACCTCGTAACCGACGCCTGGAACTGACATCTGGCT
ACTTCTTCAGGCAGGTACATATACAGTGCCGGCCCGCACTTAAGAATATG
GCACGTAAGAATTTGATGCTCAAAACATCCAAAACTTAAGAATTTACCGA
TAAGAACACGTGCTCACCTGGACGCCCTGTTAGGAACAAGAACACACACC
TGAGGTGCAAAACTGCTGCTACAAATACGAACGACAGCAATGCACCAGCT
GCCAGATAAGAATATTCGCAGGGTGAGGGAGGGAAGAGGGGGGAGTGATC
CCAGAGTAGAGAGTATTGGACTTGGGGGGGGGGTGTACTCATAGTCGTGC
ATGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTCCAAGCGACGAAAA
CCCAACCCCGATGGCAAACACCGGGGGGGGGGAGTATTGGACTTGGGAGG
GGTATATACCCCACATATCAATACTTGTATTTTTTTGGACGGGGAGGGTG
GGCATTGTACGCACGCGTCGTGCCCCTCAGTGCCCCCGAGAAAAGCGTGC
GTGCCACGCAACGTGCAGCGTGCCACGAGCTGCCTGCGGTGCAAGGGGAT
CATGTCCTAGTGCAATCCCTTGTCCCGTGGGATATTGAAAGAGCTTGGCA
AACTTGCAGAGTTGAAACAAAGGGGTCTGATTCTTGACCGTCACTTCGAG
CCAATCAAAGCACACGTGAAGGCGGGCAACTCCGTTGCGAAGGAGCGTTG
GGACGCCATCGAGAGCGCGTGGGGGCTGAAGCAGAACGGTGTCTTCGACG
AAGAAGAGTGGGTCACGCAGATTGACGGCGAAACGCAGGGTATTACCAGC
AGCACCCGCCTGTCCTCTTCATCCCAACAAGATGCCGGCAGCGCGCGAGG
TGTTGCACCGCCGACTCAGCACCCACCACCTGCTGCTGCAGGTACCGCGA
GGAGAAAGGCCGTGGATCGCGGGAAGCAAGCTAGGGAGAGAGCTGCCAAA
GGCACTTTAGGCCGCAACATCTGCAACGCGTCCGCGATTGCCAGCCGAGG
ACCGGTGAGCACACAGCAGTTACCTTTCGCTACCGGTGTAGTCTACATGC
ACTATTTTCATTGTTCAAGAAAAACTCCCGTGAAAATGATGACATTATGA
AGGCCATTTTTTTTCAGTAGCGGCGCGTAATAAAAAAAAAAAGAGAAGGT
TTTTAATTTTGGGGCTGGCCTCTGCTGGCAACGACTGCGTTTCGCACGCC
GTTTCTTGCTGTAGGTGCCCAAGCAAGTGGAGGAGTGTCGAGTTATCGTC
AACTGCGTCTGCTGGCAAGAGCCAGCTTCGGTGCAAATACTCCGGAAAGT
TGTGCCTTTTTCAGATACGTGGAATGCTGCTGCTGTGTAGACATGATAAG
GTAAAATTTTCGTCCATCCCCCTTCTTTTCAAGCAAGACCAGAACATTAA
AAGAAAATGGTGTGGACAGATATTCTAGTTTGGATCCCGGCGACTTTGTT
TTGGCGTCACAACAGTTCATGTTCTCTGCTTGATACTTAGTTTGAATAGT
CACGAACGAAACAGACAGCTTTCGGCTCTCCACGGAGGTTTGAGGTCGAA
AGCGCCACACTCCATAGCGAACGATACATGACGGTACTCGTTGAATGACC
CCCCCGGCAACTTCGCCCTACTTCCACCTTGTCATGCAGATTGAGCGGAC
TCGCGGTGGAGTGAAAGAGCTCATATCCGGTATAAGCTTCCCACCTCCGA
CCCCGGAGTCCCGTCGATCTTGCCCTCACTGTCCCATGACCTTCGTGAAC
GAGCAAGGCCTTGGAATCCACGTGAGAACGTAGCACAGCAGTGTAACCAT
GTCCAACGGCGTGCGGCTGCGGCGCATGTTACGGAAGGACGTCGGAGGGA
GTGTCCTGCCGTGGGAAGTAGCCGGGCCTGGGCGTTATTTGCACGTGAAG
TTCGATCATGCGACGGGGTCGGCTTCGTTTGTCCTCCAGCGGAAGCGCTT
TCTCGATCTCGACTTGGATAGCAACGGCTTTATGGACCGCAAACCCAAGG
ACACTAGTGGGGCTCCCAAGCGCAGGCGATACGACTTCAGGTTCAAAGCC
CACGCGATCAACCAGCTGCCATCCTCCAAGACAACGCCGAAGACCTCTGG
AAGGAGGAGCAGCGCACGCCTCTTCAGTTCTTGGAGGATCGTCTCAAGAT
TCCCTACAGCAATATAGTGAAGTGGGCCAAAAACGAGAAGGAATTGGTCG
CGGCGACAGCCGATGACGTAAAGAAGAGCCTCCTCGCCAAACAGCAGCCT
AAGCGGTGGTTTCCTGAGGCAGAGAAGCGACTGTACAAGGGGTTCGTGGA
GCGGCGGAAGAGAAAGCTGAAGGTGTCGACCCTGTGGCTGACGATCACGT
TCCGGAAGCTCGTGCGAGAGATGTACCTTGGGGATCAACGAGCGGCGTCC
TTCCGCGCATCCTTCAGGTGGGCGCGAAAATGGGCCAAGAGGCATAACCT
GTCCAAAAGACGCCGGACCAACCTCAAGAACAAGTCTGTCGAAGAGCGGC
TTCCAAAGATCCAGCGCTTCCACCGGCTGTTTCGCAAGCTCCTGCAAGGG
CCGGTGCGGTACAGGGCGCCGGATGAGTCCGACGTGTCGGCAGTCATGAC
GGTCGCGGAGAGAGAGTCCAGGGTTCCCAAATACGGTCAATTCCAGCTCT
GGTTCGAGAGGTGGGAAACCGCGTCGCTGACAGCTTCTGATCGGCGCGTC
CTCATCACTCAGTGGATGAGAGCGGCCATGGCAAGACTCAACAGCCAACA
GGCCTACCGATATCGTCTTTTCGAAACGTGCGGGATGGCCATGACCGTGG
ACGGCTCGGGCGATGATCGAATCACCTTGGAAGGTTTGGACAAGCCGTAT
ACCTTCGCTAACGATGAAGACAGTAGCGACGACGAACAAGGTTCGGAGAA
CGGCAACGATGAGCCTGAGTGGCGGGCGGAGGAGGGCGATGGAGGACGTG
AGACGCTCATGGAGGGCGTTGACTCCAGCAATGAAGACGACGGCGGTAAG
TTTGTTTTGCATTAAACCAACTCTTCATATTCTTTTTGTTGATGACGATG
TCCTTCATGTTGACAATGGCTTGTTTCCGCGCACGGCTACACTCAAATTA
TGATAAGTTCAGGTTGAGTTTGTCGATGTGTCACCCTAACTTCTTGTGTT
TCCCGTTGCCTCGTTCGCAGACATCTCTCAACCCCAGACCGACGAGCTAG
CTCTTCTGGACGACGACGACAGCATGGACCCACAAGACCCGGAGGATGAG
GTACAGGGAATGGAGATCCCGGCAGGCTTTCGTATTCAAGAAGCTAAACC
CGTTGCTCTTGACAGATTGCTTTCGCTGCGTGGAGTGCTCGTTAGGCTGG
GCATGGGGTGGTTTGGAGGGCTGATCACTCAACAATCTCAGGAGGACACT
CGCCACCTGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTACGCG
CAAGATGAGTTGCCCTTAGACAAGTACAGCGGAGGTTCGGATGCGGCTGT
AGGCTCCTGGGTTTTGCTTGAGAGCATTAGTAGATCAGGAAGGGTACGCA
GGACCGTTGCTGCTCCATGCCTTGGTATTTTCTTGTATCGACAGCATTAC
TGGTGTTGCTCATGGTTGACAGGCGACAATGTAGCAAATGGTTAAAATAC
TGTAAGAACAAGAACGCCCCTTTCTGGAGATGAATGGACGACGAAATAAG
AACTTGGCAAATAAGAACTGGTGCTCGGGTTGGGGCAGCCAATAAGAACT
GAGCCTCGCCCAATATAGTCTAGGAGGTTCTTAAGTGCGGGCCGGCCCTG
TATCGTTCCTTGGGATTGGGGTTGTAGATGTCGTGCCCGCCATTATTGCA
CGTCAGATCTCCACGTCGTACCGAAAGATCGTGTGGTCTGATTTATGCTT
ACTCTATGTTTCAATGACATACTTCGCGCGTCCTTGTTGATGGTTGAACA
GGTCCGTCCGTGCTTTACTTTCGTTGGATGCATCCATCCACGAAATACGA
CGACCCCGGGGTACGAGATATCAGACGGACGAACTCAGCCTAATACTGAA
AAGCCGGCTAGGGCGCGCGTTTCCGCCCGCGGCGAATTTTCGTTCCTAGT
TGCGCACGTAGTTGCGCAGGGAGGTGGACCGGAGGGGGGGGTATTATTCT
TCTGCCAAGCCGGGTGTCCGTTGTTTATTGACATGGTATTTTGTTCTCCG
CGTTTTTCCGGAAGACTGCCGGATACCTATTATTGGGGTGCTGTGTGCGT
TGGCCCAGTATTGTGTGCGGTGTTCGTGTGTAAGTGATTCCGGCGTTCTC
GCCACACCCAACGCTCAGGGCGTCCTCATGTACATCGAG

Coding sequence (CDS) from alignment at Scaffold_106:31236..36574+

>EsuBft1323_4a-0001 ID=EsuBft1323_4a-0001|Name=EsuBft1323_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=216bp|location=Sequence derived from alignment at Scaffold_106:31236..36574+ (Ectocarpus subulatus male Bft15b)
ATGTTCGTCTACAAGGATGAAGCGGCGTTTGACTCTGCTCATTTGACTCC
AGCCCAGCTGGTCGAAAGCGTTGACGGCGACGTCGAGGGCTACGTGGACG
TGATCCGCTACGCCATCCTCCGACTCCCCAAGAAGAAGACGACAGCCACC
TGTCCGTTTTTTTTTTCCTTGCGCAAGCAGGCAGAACGAGGGAACGCCAA
CTTCCGGTACTGGTAG