EsuBft1323_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1323_6a-0001
Unique Name	EsuBft1323_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_106	contig	Scaffold_106:28755..30167 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1323_6
Protein domains	IPR020837
Protein domains	IPR002181
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	126
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_6a	EsuBft1323_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_106 28755..30167 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_6a-0001-exon	agat-exon-50620	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 28755..28897 +
EsuBft1323_6a-0001-exon	EsuBft1323_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_106 29047..30167 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_6a-0001-cds	EsuBft1323_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_106 28755..28897 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_6a-0001-exon	agat-three_prime_utr-2993	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_106 30146..30167 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1323_6a-0001	EsuBft1323_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_106 28755..30145 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_106:28755..30167+
coding sequence from alignment at Scaffold_106:28755..30167+

spliced messenger RNA

>EsuBft1323_6a-0001 ID=EsuBft1323_6a-0001|Name=EsuBft1323_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1264bp|location=Sequence derived from alignment at Scaffold_106:28755..30167+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGCGACGATCAGAGGCCGGGGGGAATCACCCCGTTGATACTCGG
CGTAGGAGCCACGGCGGGAACCCAAGACAAACCAGTCATCTGCCAAGCAA
GCGGAATGCGGGTAGGAGACTTTCTGCCCCGACGGTGCTACCTGATTCCG
GACGACGAAGGTTTCACGCACCTCCGCGCGGACCGGTTAGGGCGAGCTGT
AACCTTCGTAGCCGCGTTGAGACAAGGAGAGAAACCCCTGCCTCTAGCTC
TCGTGCGAGCCTTTAGTCCTAGCAAGGACTGCCTCTGCCAACGCCCAGAC
TGCTTCCTAGCTACTTTCGCCGAAGAAAGGAAGGCAGAGTTTCGCCAATG
CAGTAAATGCAAGTACCGGAAATCGGACAGGAGCCGCGCAAGGTGGTATC
CCATGGATGCTGCAGGAGATCATGTCGCGGAGGGTAATGCGATGGTGCGT
GATGGTGATTGGTGGTGGGGCCGTTGCTACCAGAGCTGGTTGAACGGCAT
GAAGAGAGACGACAAACCGACAGAGCAACCAGCGAACAGGCCATGTAAGT
CGGGGGAAGAGGCGCCGACGCTTCTAGAGCCTTTGAGCACGGTGCGCAGG
ATGGTGGATGATGTCCTCGGTCGAGGTGACATCCTTTGCTGGCAGGACGT
CGCCCGTTGGCTAGCTGCTGAACGCGCGAAGGTTGGCATGGAGGAGATAA
CGGGGAAGTACACACGACAACTCGTCCTAGACTTGTTTACCGGGATGGAC
GCAGACCCCGGGAGCAAATCACGATTGGTCCGAGCCAACGGAGCGCAAGG
AGACGCACGCGAGCGGGAACTCTTCCTCTCCCCAAACACCCTTGGGGACA
AGCATCTCGTTGACTTGATGCTGCGTGCTCGACATAGTGCACCCGCACAG
CCACCATCCAACCAGCTAGCTGATAAGGGTGGGTCTCTCGAGTCGATTCT
GAAGGAAGTCGAGAAGGACACGGAGGACGCAGACGCACGGATGTCCGTCG
TGCGGGCAGCTGGTAGAATTGTTCGAGCCGACGTGGAGAGTGACCCTGCC
CTGAAGAACGCCACCGGCACACGCGAGGAGTATCGCTACGCCGATGAGTT
GGACATGAAAGTGAAGCCACCCAGAGAGACTCTACTATCCGCGTTTCCGC
CGTCCTTGGTTGGGTTGTACCAAAGCATGACAGACATGGCACTGTATCGC
GAGATCATCGCATCAGAGACCGAACATCCTGGAGAGCCCTGAGTATGGCA
GACCGAAGGGCGAG

protein sequence of EsuBft1323_6a-0001

>EsuBft1323_6 ID=EsuBft1323_6|Name=EsuBft1323_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=413bp
MNGDDQRPGGITPLILGVGATAGTQDKPVICQASGMRVGDFLPRRCYLIP
DDEGFTHLRADRLGRAVTFVAALRQGEKPLPLALVRAFSPSKDCLCQRPD
CFLATFAEERKAEFRQCSKCKYRKSDRSRARWYPMDAAGDHVAEGNAMVR
DGDWWWGRCYQSWLNGMKRDDKPTEQPANRPCKSGEEAPTLLEPLSTVRR
MVDDVLGRGDILCWQDVARWLAAERAKVGMEEITGKYTRQLVLDLFTGMD
ADPGSKSRLVRANGAQGDARERELFLSPNTLGDKHLVDLMLRARHSAPAQ
PPSNQLADKGGSLESILKEVEKDTEDADARMSVVRAAGRIVRADVESDPA
LKNATGTREEYRYADELDMKVKPPRETLLSAFPPSLVGLYQSMTDMALYR
EIIASETEHPGEP

mRNA from alignment at Scaffold_106:28755..30167+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1323_6a-0001 ID=EsuBft1323_6a-0001|Name=EsuBft1323_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1413bp|location=Sequence derived from alignment at Scaffold_106:28755..30167+ (Ectocarpus subulatus male Bft15b)
ATGAACGGCGACGATCAGAGGCCGGGGGGAATCACCCCGTTGATACTCGG
CGTAGGAGCCACGGCGGGAACCCAAGACAAACCAGTCATCTGCCAAGCAA
GCGGAATGCGGGTAGGAGACTTTCTGCCCCGACGGTGCTACCTGTAGGCC
AACCAACAGGCAAGAAGCGAAAAAAGGCGTGCGGCCTTCAGGAATGCGGT
TGGGTTACACACCACCCTGGCACCGAGTGTAGCACATGCCCCGGGAGTGT
AGTGCACTCGGTCGACGAGAGACCATGTTCGGCATGCCACAGGATTCCGG
ACGACGAAGGTTTCACGCACCTCCGCGCGGACCGGTTAGGGCGAGCTGTA
ACCTTCGTAGCCGCGTTGAGACAAGGAGAGAAACCCCTGCCTCTAGCTCT
CGTGCGAGCCTTTAGTCCTAGCAAGGACTGCCTCTGCCAACGCCCAGACT
GCTTCCTAGCTACTTTCGCCGAAGAAAGGAAGGCAGAGTTTCGCCAATGC
AGTAAATGCAAGTACCGGAAATCGGACAGGAGCCGCGCAAGGTGGTATCC
CATGGATGCTGCAGGAGATCATGTCGCGGAGGGTAATGCGATGGTGCGTG
ATGGTGATTGGTGGTGGGGCCGTTGCTACCAGAGCTGGTTGAACGGCATG
AAGAGAGACGACAAACCGACAGAGCAACCAGCGAACAGGCCATGTAAGTC
GGGGGAAGAGGCGCCGACGCTTCTAGAGCCTTTGAGCACGGTGCGCAGGA
TGGTGGATGATGTCCTCGGTCGAGGTGACATCCTTTGCTGGCAGGACGTC
GCCCGTTGGCTAGCTGCTGAACGCGCGAAGGTTGGCATGGAGGAGATAAC
GGGGAAGTACACACGACAACTCGTCCTAGACTTGTTTACCGGGATGGACG
CAGACCCCGGGAGCAAATCACGATTGGTCCGAGCCAACGGAGCGCAAGGA
GACGCACGCGAGCGGGAACTCTTCCTCTCCCCAAACACCCTTGGGGACAA
GCATCTCGTTGACTTGATGCTGCGTGCTCGACATAGTGCACCCGCACAGC
CACCATCCAACCAGCTAGCTGATAAGGGTGGGTCTCTCGAGTCGATTCTG
AAGGAAGTCGAGAAGGACACGGAGGACGCAGACGCACGGATGTCCGTCGT
GCGGGCAGCTGGTAGAATTGTTCGAGCCGACGTGGAGAGTGACCCTGCCC
TGAAGAACGCCACCGGCACACGCGAGGAGTATCGCTACGCCGATGAGTTG
GACATGAAAGTGAAGCCACCCAGAGAGACTCTACTATCCGCGTTTCCGCC
GTCCTTGGTTGGGTTGTACCAAAGCATGACAGACATGGCACTGTATCGCG
AGATCATCGCATCAGAGACCGAACATCCTGGAGAGCCCTGAGTATGGCAG
ACCGAAGGGCGAG

Coding sequence (CDS) from alignment at Scaffold_106:28755..30167+

>EsuBft1323_6a-0001 ID=EsuBft1323_6a-0001|Name=EsuBft1323_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1242bp|location=Sequence derived from alignment at Scaffold_106:28755..30167+ (Ectocarpus subulatus male Bft15b)
ATGAACGGCGACGATCAGAGGCCGGGGGGAATCACCCCGTTGATACTCGG
CGTAGGAGCCACGGCGGGAACCCAAGACAAACCAGTCATCTGCCAAGCAA
GCGGAATGCGGGTAGGAGACTTTCTGCCCCGACGGTGCTACCTGATTCCG
GACGACGAAGGTTTCACGCACCTCCGCGCGGACCGGTTAGGGCGAGCTGT
AACCTTCGTAGCCGCGTTGAGACAAGGAGAGAAACCCCTGCCTCTAGCTC
TCGTGCGAGCCTTTAGTCCTAGCAAGGACTGCCTCTGCCAACGCCCAGAC
TGCTTCCTAGCTACTTTCGCCGAAGAAAGGAAGGCAGAGTTTCGCCAATG
CAGTAAATGCAAGTACCGGAAATCGGACAGGAGCCGCGCAAGGTGGTATC
CCATGGATGCTGCAGGAGATCATGTCGCGGAGGGTAATGCGATGGTGCGT
GATGGTGATTGGTGGTGGGGCCGTTGCTACCAGAGCTGGTTGAACGGCAT
GAAGAGAGACGACAAACCGACAGAGCAACCAGCGAACAGGCCATGTAAGT
CGGGGGAAGAGGCGCCGACGCTTCTAGAGCCTTTGAGCACGGTGCGCAGG
ATGGTGGATGATGTCCTCGGTCGAGGTGACATCCTTTGCTGGCAGGACGT
CGCCCGTTGGCTAGCTGCTGAACGCGCGAAGGTTGGCATGGAGGAGATAA
CGGGGAAGTACACACGACAACTCGTCCTAGACTTGTTTACCGGGATGGAC
GCAGACCCCGGGAGCAAATCACGATTGGTCCGAGCCAACGGAGCGCAAGG
AGACGCACGCGAGCGGGAACTCTTCCTCTCCCCAAACACCCTTGGGGACA
AGCATCTCGTTGACTTGATGCTGCGTGCTCGACATAGTGCACCCGCACAG
CCACCATCCAACCAGCTAGCTGATAAGGGTGGGTCTCTCGAGTCGATTCT
GAAGGAAGTCGAGAAGGACACGGAGGACGCAGACGCACGGATGTCCGTCG
TGCGGGCAGCTGGTAGAATTGTTCGAGCCGACGTGGAGAGTGACCCTGCC
CTGAAGAACGCCACCGGCACACGCGAGGAGTATCGCTACGCCGATGAGTT
GGACATGAAAGTGAAGCCACCCAGAGAGACTCTACTATCCGCGTTTCCGC
CGTCCTTGGTTGGGTTGTACCAAAGCATGACAGACATGGCACTGTATCGC
GAGATCATCGCATCAGAGACCGAACATCCTGGAGAGCCCTGA