EsuBft1323_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1323_7a-0001
Unique NameEsuBft1323_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:9097..12084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog164328.Phyra87194
ProteomeIdEsuBft1323_7
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon5
Max annot lvl164328.Phyra87194|-
Length1270
Hectar predicted targeting categoryother localisation
Evalue1.39e-23
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3Q8Z1@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontransposition, RNA-mediated
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_7aEsuBft1323_7aEctocarpus subulatus male Bft15bgeneScaffold_106 9097..12084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_7a-0001EsuBft1323_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 9176..12084 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_7a-0001-exonEsuBft1323_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 9097..9592 +
EsuBft1323_7a-0001-exonagat-exon-50624Ectocarpus subulatus male Bft15bexonScaffold_106 9689..9917 +
EsuBft1323_7a-0001-exonagat-exon-50623Ectocarpus subulatus male Bft15bexonScaffold_106 10409..10569 +
EsuBft1323_7a-0001-exonagat-exon-50622Ectocarpus subulatus male Bft15bexonScaffold_106 11133..11342 +
EsuBft1323_7a-0001-exonagat-exon-50621Ectocarpus subulatus male Bft15bexonScaffold_106 11911..12084 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_7a-0001-exonagat-five_prime_utr-1967Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_106 9097..9175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_7a-0001-cdsEsuBft1323_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 9176..9592 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1323_7a-0001 ID=EsuBft1323_7a-0001|Name=EsuBft1323_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1270bp|location=Sequence derived from alignment at Scaffold_106:9097..12084+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGTTCGCTTCCCTCAACAAGAAGTTTCCGGTGAAAGATCTGGGGGAGT
GTACCTGGTACGACGGGTGTGCTATCGCCATGGATGTAGAAAATGGCATC
ACCAAGCTGTCCCAGACAGCATACATTGAGAGTATGCTGAAGCGGTTTGA
TGTGACCACGACCGCTTTCACCCCTGCTGCCACCGATGCCGACCTAGGGC
CGAAGAGAGATGACGAGCCCGCGGTGGACAAGCCTGTGAGGGAGGCGATC
GGATGCCTGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCT
GAACAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACT
CGCTTGTGCGGATCATGTCCTACCTGAACTGCACGAAGGACTTCGGCATC
ACCTACGTACGGGGGTCAGGACTAGACCTAAGCGTGTTTGTCGATGCCAG
CTACGCTGACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTGGCG
TGAAGGAGGCGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCGAG
ACGAGTGGGGCGAAGATCAAGGTCCTTGAGGACAACAAGGGGGCTCTCGC
CTTAATCGAGAACCCGTTCAGCTCAGCGAGGAGTAAGCACATCGACGTGC
GGTTCCATTTCATTCGCGAGCTATTCAAGCTNTTGGTTTATGTGGTGGTT
TTAGCACTTGACAAATATGACCATGGTTGCCGCTTCTCGTCAGCTCAAGC
CAAGGCCGCGGCGCCAGTGATGAGGCGGGGGGAGAGTCCTCGCCGGACAC
CGGGGGTAGTAGTGAGGGCGGAGACGGCAAGTGGAAGGAGCCGGAGAGGA
GAAAGCCTGGGCCTGAGGAGGAAAGCTCTGGCAAAGGGAGAGAGGGAGCT
TCTGTGGCTGCTCATACCGAAGCACTTAGCGTCCAAGCACTCGGCCAAGA
AGGATAAGGATGACGAGTGGTGGGAATGCCCACAGGCCCTCTCGAAGAAG
GTCGAGATGACAGCACGGGTCGAGGAAGTGCAAAAGGACGGCAACCTGGA
ACTCGTCGCGAAGAAGGTCACAGTCGACATGGGGAGGAAGATGGAGGGAC
TGTCGCGGGAGGTCATCGTGGAAGAGCTGAGGACCATCTTCAGCGCTCAC
CGGACGGCATGGAAGAAGAGGCAGGAGGAGAAGAAGAGTTTCAGCGGCGA
GAGTGACGATGGTGATGACGACGGAACGGAGGTGAGGTTGCAATGCACGA
CAGGAGACACCCATGGTTAG
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protein sequence of EsuBft1323_7a-0001

>EsuBft1323_7 ID=EsuBft1323_7|Name=EsuBft1323_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=396bp
MDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVD
KPVREAIGCLMWTKLTRPDIALPLNKLQKIAHSPTGRIWNSLVRIMSYLN
CTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLAGVKEALFVRGV
LSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFK
LLVYVVVLALDKYDHGCRFSSAQAKAAAPVMRRGESPRRTPGVVVRAETA
SGRSRRGESLGLRRKALAKGERELLWLLIPKHLASKHSAKKDKDDEWWEC
PQALSKKVEMTARVEEVQKDGNLELVAKKVTVDMGRKMEGLSREVIVEEL
RTIFSAHRTAWKKRQEEKKSFSGESDDGDDDGTEVRLQCTTGDTHG
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mRNA from alignment at Scaffold_106:9097..12084+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1323_7a-0001 ID=EsuBft1323_7a-0001|Name=EsuBft1323_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2988bp|location=Sequence derived from alignment at Scaffold_106:9097..12084+ (Ectocarpus subulatus male Bft15b)
GTTGTTCGCTTCCCTCAACAAGAAGTTTCCGGTGAAAGATCTGGGGGAGT
GTACCTGGTACGACGGGTGTGCTATCGCCATGGATGTAGAAAATGGCATC
ACCAAGCTGTCCCAGACAGCATACATTGAGAGTATGCTGAAGCGGTTTGA
TGTGACCACGACCGCTTTCACCCCTGCTGCCACCGATGCCGACCTAGGGC
CGAAGAGAGATGACGAGCCCGCGGTGGACAAGCCTGTGAGGGAGGCGATC
GGATGCCTGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCT
GAACAAGCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACT
CGCTTGTGCGGATCATGTCCTACCTGAACTGCACGAAGGACTTCGGCATC
ACCTACGTACGGGGGTCAGGACTAGACCTAAGCGTGTTTGTCGATGCCAG
CTACGCTGACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTGTGA
CCGTAGGTGGTACCGTACTGTGTGCATCCACCAAGACGCAGCCAGTGACG
GCACAGTCGACCTTGGAAGCAGAGTGTATGGCAGCCGGGAAGGGCGTGAA
GGAGGCGTTGTTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCGAGACGA
GTGGGGCGAAGATCAAGGTCCTTGAGGACAACAAGGGGGCTCTCGCCTTA
ATCGAGAACCCGTTCAGCTCAGCGAGGAGTAAGCACATCGACGTGCGGTT
CCATTTCATTCGCGAGCTATTCAAGCTNTTGGTTTATGTGGTGGTTTTAG
CACTTGACAAATATGACCATGGTACGTCACGCAGGAAGCGTTGTGCCGGC
GCGTCACCCGTGGCTGGAGCCTAGAAACGCCGAGAGCGTGCTTCGGGTGT
TAGATCAGCGTGACCGGTTCAATCTGTCCTGACTTGGTCTTGTCTTGGAA
GTGCGGCCGTTGGAATCCTCCGTGATAGCGACGGTTTTCTATATTTTGGG
TGTTAGACGAGGGTTTTTGATCCGGTTGGCCGGGTTTCCCCTCGAGCCTG
TTGTTGTTTTGAGTCCCTTTGGTAGATCAGGGTATCCATGCCCCACGTTA
GGTTTGCCATGNGGGTGTGTAATCAGCGTGACCGGTTCAATCTGTCCTGC
CTTGGTCTTGTCGTTNTGTACACCTTGACGTGGTTGCATGTGCGGGGAAC
CCTCGAACTCCAAAGAGGGCTTCACTTCTCCTCACTCCCCTTGCGTGTCT
AATACAAGAGATAAAACGTCTTCCCCTTTCAAGTAAACGACATATACGAA
CAGTTCTTTCAGGTTGCCGCTTCTCGTCAGCTCAAGCCAAGGCCGCGGCG
CCAGTGATGAGGCGGGGGGAGAGTCCTCGCCGGACACCGGGGGTAGTAGT
GAGGGCGGAGACGGCAAGTGGAAGGAGCCGGAGAGGAGAAAGCCTGGGCC
TGAGGAGGAAAGCTCTGGCAAAGGTGTGTGCTCGAAGGATGTAGTCGGTG
TCGATGATTGTGCGCCCTTCTGAGAGGACTTGTGAGAGGACTGAAAACAT
GTACACATGTATTTCTGTTTTCATGCGCCCTCTGCGAAAAAGGGTGTAAG
TATTGGATCCTGTACGATATTAGGCACCTGCACTTCGTGATGTTCCCTCA
ATCATGTGCCCTTGTGGCATACGTCGTGTCCGCTTCCCAATAAGTTTGCA
ATAGGCGTGCTTGACTGATTGTTTTCTTCGAGGCGGCAACGGTTGAGATA
TGCATGCAGCAGAAAAAAAATGCAGAGAACAACCTGAAAACTTCAATTGT
TTGCAATCGTTAGCTTCGAATCGAATGCAGGATGTGGGATCCGCAATGCC
ATTTTGTACAACGAAACACAGAGCAGTGCTGTATATCGGCGGGGCGCCTC
CCGTGAAGTGAGTGGCGACCCAACCCCTTCAAGTCGTGGCTAATGTACGA
CGTCCATCACCCTAACTCTTGTTCCGCAACTCTCGTTTGCCTTGCATTCC
TGATCAGAGACAGGCCCGCGGTGGTGGACTCAGCAGGGAGAGAGGGAGCT
TCTGTGGCTGCTCATACCGAAGCACTTAGCGTCCAAGCACTCGGCCAAGA
AGGATAAGGATGACGAGTGGTGGGAATGCCCACAGGCCCTCTCGAAGAAG
GTCGAGATGACAGCACGGGTCGAGGAAGTGCAAAAGGACGGCAACCTGGA
ACTCGTCGCGAAGAAGGTCACAGTCGACATGGGGAGGAAGATGGAGGTGG
GTGGACGCTGCGGATATTTTTTTGTATTTCGGATTGCGGTTCGATCTTGA
GCTCCATCAAGCTTAACTCACCCAACTTAGTGCTTGCTTAGGATCACGTA
CGCGGCGAGTAGGATAAGTCTTCAGCATCCGAGACAATGACAAGTTGACC
CTTTTTTTGTTGACGGTACCTATGAAGCCAAATAAAGCGCTGTGGGGGGC
GGGGGTGGGTGGGCTATAAAGAAGGCCTCCGCGTCAGGAACGAATGCAAG
ATATATGAAAACGGTTGCGAAACAACCCATAACCTAACCACCTTGAAATG
TAGCTGTGTGTGATCCCGTTGTCGTCTAGTCGCACAAACGGTGCCCATTT
CACAAGGCCGCCTAACGACACTTGTTACTGTTGTTCCTGCCTATCGCCGA
AGTATTCGCACGAAAACGCTGGGTTATGAGCGATAAGAGCTCCCCTACCC
CGTGTTTCTCAGACAGTGTTTGGATAGCCGTGGCGGACATAATATGGTAA
CGATAGCATTGTCGTTCGAGAGACTCGCCCCCCTTGATTTTTCCCGTTCG
CACCGATGTCATAGGGACTGTCGCGGGAGGTCATCGTGGAAGAGCTGAGG
ACCATCTTCAGCGCTCACCGGACGGCATGGAAGAAGAGGCAGGAGGAGAA
GAAGAGTTTCAGCGGCGAGAGTGACGATGGTGATGACGACGGAACGGAGG
TGAGGTTGCAATGCACGACAGGAGACACCCATGGTTAG
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Coding sequence (CDS) from alignment at Scaffold_106:9097..12084+

>EsuBft1323_7a-0001 ID=EsuBft1323_7a-0001|Name=EsuBft1323_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1191bp|location=Sequence derived from alignment at Scaffold_106:9097..12084+ (Ectocarpus subulatus male Bft15b)
ATGGATGTAGAAAATGGCATCACCAAGCTGTCCCAGACAGCATACATTGA
GAGTATGCTGAAGCGGTTTGATGTGACCACGACCGCTTTCACCCCTGCTG
CCACCGATGCCGACCTAGGGCCGAAGAGAGATGACGAGCCCGCGGTGGAC
AAGCCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAG
GCCAGACATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCCCACTCAC
CCACCGGGAGGATATGGAACTCGCTTGTGCGGATCATGTCCTACCTGAAC
TGCACGAAGGACTTCGGCATCACCTACGTACGGGGGTCAGGACTAGACCT
AAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGTT
CTACGACCGGGCTAGCTGGCGTGAAGGAGGCGTTGTTTGTGCGTGGCGTT
CTGTCGTTCATAGCGCCCGAGACGAGTGGGGCGAAGATCAAGGTCCTTGA
GGACAACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCTCAGCGA
GGAGTAAGCACATCGACGTGCGGTTCCATTTCATTCGCGAGCTATTCAAG
CTNTTGGTTTATGTGGTGGTTTTAGCACTTGACAAATATGACCATGGTTG
CCGCTTCTCGTCAGCTCAAGCCAAGGCCGCGGCGCCAGTGATGAGGCGGG
GGGAGAGTCCTCGCCGGACACCGGGGGTAGTAGTGAGGGCGGAGACGGCA
AGTGGAAGGAGCCGGAGAGGAGAAAGCCTGGGCCTGAGGAGGAAAGCTCT
GGCAAAGGGAGAGAGGGAGCTTCTGTGGCTGCTCATACCGAAGCACTTAG
CGTCCAAGCACTCGGCCAAGAAGGATAAGGATGACGAGTGGTGGGAATGC
CCACAGGCCCTCTCGAAGAAGGTCGAGATGACAGCACGGGTCGAGGAAGT
GCAAAAGGACGGCAACCTGGAACTCGTCGCGAAGAAGGTCACAGTCGACA
TGGGGAGGAAGATGGAGGGACTGTCGCGGGAGGTCATCGTGGAAGAGCTG
AGGACCATCTTCAGCGCTCACCGGACGGCATGGAAGAAGAGGCAGGAGGA
GAAGAAGAGTTTCAGCGGCGAGAGTGACGATGGTGATGACGACGGAACGG
AGGTGAGGTTGCAATGCACGACAGGAGACACCCATGGTTAG
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