EsuBft1323_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1323_8a-0001
Unique NameEsuBft1323_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:8049..9095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog67593.Physo130685
ProteomeIdEsuBft1323_8
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon1
Max annot lvl4776|Peronosporales
Length934
Hectar predicted targeting categoryother localisation
Evalue5.21e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiongag-polypeptide of LTR copia-type
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0043170
GO0003824
GO0044238
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_8aEsuBft1323_8aEctocarpus subulatus male Bft15bgeneScaffold_106 8049..9095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_8a-0001EsuBft1323_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 8312..8758 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_8a-0001-exonagat-exon-50625Ectocarpus subulatus male Bft15bexonScaffold_106 8049..8068 +
EsuBft1323_8a-0001-exonEsuBft1323_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 8182..9095 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_8a-0001-exonagat-five_prime_utr-1968Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_106 8049..8068 +
EsuBft1323_8a-0001-exonagat-five_prime_utr-1969Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_106 8182..8311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_8a-0001-cdsEsuBft1323_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 8312..8758 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1323_8a-0001-exonagat-three_prime_utr-2994Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_106 8759..9095 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1323_8a-0001 ID=EsuBft1323_8a-0001|Name=EsuBft1323_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=934bp|location=Sequence derived from alignment at Scaffold_106:8049..9095+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCCGGGGGACGGAGGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNGCGAC
CATCCTGGAAACTGGCTGGACGGGGATTGTTGAGGACTACATCTGCAACT
CGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCTTTTGGAGGAG
ATGTACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGGAACAGCAGGCGTT
CGGGGCCGAGGTCGACGCCAGCTGGTCTTCGCAACCACTCCCAGACCCAC
AGTTAAGTGTGACCTCGCCACTCGGGCAGAAGCCGAGTAATGTGGAAGTA
GTACCGATGACGTACAAGGATGTGATGTGTTCCAAGTACAAGGTTTTCTG
GGAGGCGGCCATGAAGAAAGAGATAGATGGCCACGACAAGACTGGAACCT
TTACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGGTTCAAAG
TGGGTGTTCTCTTGGAAGACGAATGAGAAAGGCCTGATAGTCGACTTCAA
GGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCGGCATCGACTTCCA
CCACTCATCCTCAACGTGCCCGTCTGCAGCGTCTATCAAGACGGTGATTA
CCGTAGCCACTGAAAAGGGCAAGAAACTCGCTCACTGGGATGTGAAGCAA
GCGTACATCCACGCTAAGCTAATAGAAGAAATATACCTCAGGTTCCCGGA
AGGATGTGGTAGCATGTCCGGCAAAGTGGTCAATGTTGAGCGTGCCCTGT
ATGGCCTAGAGCAGTCGCCGTGAGTGGGGGTTCGAACCTCCCGATGCCCT
CATCGAAAATGGATACGAGCAGTGCAGGGTTGACCCGTGTGTCTTCCGGA
AGGTGGTGGATGGAGAGGTCGTAGGTCTCATCGTGATCTACGTTGATGAC
ATCTTAGTGGCGGCAGACGAGGGAGAGCGAGAGG
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protein sequence of EsuBft1323_8a-0001

>EsuBft1323_8 ID=EsuBft1323_8|Name=EsuBft1323_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=148bp
MYRREMQEVLGPEQQAFGAEVDASWSSQPLPDPQLSVTSPLGQKPSNVEV
VPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSK
WVFSWKTNEKGLIVDFKARMVARGFSQIPASTSTTHPQRARLQRLSRR
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mRNA from alignment at Scaffold_106:8049..9095+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1323_8a-0001 ID=EsuBft1323_8a-0001|Name=EsuBft1323_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1047bp|location=Sequence derived from alignment at Scaffold_106:8049..9095+ (Ectocarpus subulatus male Bft15b)
TTCCGGGGGACGGAGGCAGCGTTCCCCCGTCGCCCCCTTCCGGAAGGGGC
GACTTCGGCGGAGGCAGTGACAGCCCCACCGACAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCCCGAGCAGCAGCAGCAGNNNNNNNNNNNNNNNNN
NNNNNNNNGCGACCATCCTGGAAACTGGCTGGACGGGGATTGTTGAGGAC
TACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACG
CCTTTTGGAGGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGG
AACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCTGGTCTTCGCAACCA
CTCCCAGACCCACAGTTAAGTGTGACCTCGCCACTCGGGCAGAAGCCGAG
TAATGTGGAAGTAGTACCGATGACGTACAAGGATGTGATGTGTTCCAAGT
ACAAGGTTTTCTGGGAGGCGGCCATGAAGAAAGAGATAGATGGCCACGAC
AAGACTGGAACCTTTACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGC
CATAGGTTCAAAGTGGGTGTTCTCTTGGAAGACGAATGAGAAAGGCCTGA
TAGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCG
GCATCGACTTCCACCACTCATCCTCAACGTGCCCGTCTGCAGCGTCTATC
AAGACGGTGATTACCGTAGCCACTGAAAAGGGCAAGAAACTCGCTCACTG
GGATGTGAAGCAAGCGTACATCCACGCTAAGCTAATAGAAGAAATATACC
TCAGGTTCCCGGAAGGATGTGGTAGCATGTCCGGCAAAGTGGTCAATGTT
GAGCGTGCCCTGTATGGCCTAGAGCAGTCGCCGTGAGTGGGGGTTCGAAC
CTCCCGATGCCCTCATCGAAAATGGATACGAGCAGTGCAGGGTTGACCCG
TGTGTCTTCCGGAAGGTGGTGGATGGAGAGGTCGTAGGTCTCATCGTGAT
CTACGTTGATGACATCTTAGTGGCGGCAGACGAGGGAGAGCGAGAGG
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Coding sequence (CDS) from alignment at Scaffold_106:8049..9095+

>EsuBft1323_8a-0001 ID=EsuBft1323_8a-0001|Name=EsuBft1323_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=447bp|location=Sequence derived from alignment at Scaffold_106:8049..9095+ (Ectocarpus subulatus male Bft15b)
ATGTACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGGAACAGCAGGCGTT
CGGGGCCGAGGTCGACGCCAGCTGGTCTTCGCAACCACTCCCAGACCCAC
AGTTAAGTGTGACCTCGCCACTCGGGCAGAAGCCGAGTAATGTGGAAGTA
GTACCGATGACGTACAAGGATGTGATGTGTTCCAAGTACAAGGTTTTCTG
GGAGGCGGCCATGAAGAAAGAGATAGATGGCCACGACAAGACTGGAACCT
TTACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGGTTCAAAG
TGGGTGTTCTCTTGGAAGACGAATGAGAAAGGCCTGATAGTCGACTTCAA
GGCCCGTATGGTTGCGCGGGGTTTCTCTCAAATCCCGGCATCGACTTCCA
CCACTCATCCTCAACGTGCCCGTCTGCAGCGTCTATCAAGACGGTGA
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