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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 90675.XP_010506885.1 |
| ProteomeId | EsuBft1323_11 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 35493|Streptophyta |
| Length | 515 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.38e-12 |
| EggNOG OGs | COG2801@1|root,COG5285@1|root,KOG0017@2759|Eukaryota,KOG3290@2759|Eukaryota,37PY8@33090|Viridiplantae,3GG3P@35493|Streptophyta,3HYAG@3699|Brassicales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K00477 |
| KEGG Pathway | ko04146,map04146 |
| GOs | GO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016705,GO:0016706,GO:0044464,GO:0048244,GO:0051213,GO:0055114,GO:0071944 |
| EC | 1.14.11.18 |
| Description | Phytanoyl-CoA dioxygenase (PhyH) |
| COG category | I |
| BRITE | ko00000,ko00001,ko01000 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0043170 |
| GO | 0003824 |
| GO | 0044238 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1323_11a-0001 ID=EsuBft1323_11a-0001|Name=EsuBft1323_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=515bp|location=Sequence derived from alignment at Scaffold_106:153..667+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTTGCCAGAAGCAGGTATGCCGTGTATTCCGGTGTTCGAGGATAACCA
GGCGGCTATTCAGTTGGCGCAGGTCCCGATTAGCAACAGTAACTCGAAGC
ACATCGACGTAAGGCACCACATTATCAGGGAACTGGCAGGCAGGAAAGAG
ATTTCGATTTTTCACGTGGAATCAGCGATTCAACATGCCGACTTCCTCAC
GAAGGCACTTCACGTCGGAGAGTTTGAGTTTCAACGTTATTTCGTGTTGA
GTCTGGGACAGGAACGGTAGATTTGGATTTATTTGTGTGTGATCAAACAA
CTAGGGGAGGAGCATTGTTTTTCATTTTTGCCGATGGTCTTCTCAATGAA
TGGTGCTCTAGGATGGGGGGCAATTGGATCGCTATGATTATCGAAGAACT
ACAACTGGAATGATCGGGGATGGAAAAATATTTCAAGCGCAGAAGGCTAA
TGTTGCAGATTTGAGTTGTGTTTTGGATTATTTTCTTGTGTTTTGGAGTT
ACTGAAAGATCATGA back to topprotein sequence of EsuBft1323_11a-0001 >EsuBft1323_11 ID=EsuBft1323_11|Name=EsuBft1323_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=89bp
MLPEAGMPCIPVFEDNQAAIQLAQVPISNSNSKHIDVRHHIIRELAGRKE
ISIFHVESAIQHADFLTKALHVGEFEFQRYFVLSLGQER back to topmRNA from alignment at Scaffold_106:153..667+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1323_11a-0001 ID=EsuBft1323_11a-0001|Name=EsuBft1323_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=515bp|location=Sequence derived from alignment at Scaffold_106:153..667+ (Ectocarpus subulatus male Bft15b)
ATGTTGCCAGAAGCAGGTATGCCGTGTATTCCGGTGTTCGAGGATAACCA
GGCGGCTATTCAGTTGGCGCAGGTCCCGATTAGCAACAGTAACTCGAAGC
ACATCGACGTAAGGCACCACATTATCAGGGAACTGGCAGGCAGGAAAGAG
ATTTCGATTTTTCACGTGGAATCAGCGATTCAACATGCCGACTTCCTCAC
GAAGGCACTTCACGTCGGAGAGTTTGAGTTTCAACGTTATTTCGTGTTGA
GTCTGGGACAGGAACGGTAGATTTGGATTTATTTGTGTGTGATCAAACAA
CTAGGGGAGGAGCATTGTTTTTCATTTTTGCCGATGGTCTTCTCAATGAA
TGGTGCTCTAGGATGGGGGGCAATTGGATCGCTATGATTATCGAAGAACT
ACAACTGGAATGATCGGGGATGGAAAAATATTTCAAGCGCAGAAGGCTAA
TGTTGCAGATTTGAGTTGTGTTTTGGATTATTTTCTTGTGTTTTGGAGTT
ACTGAAAGATCATGA back to topCoding sequence (CDS) from alignment at Scaffold_106:153..667+ >EsuBft1323_11a-0001 ID=EsuBft1323_11a-0001|Name=EsuBft1323_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=270bp|location=Sequence derived from alignment at Scaffold_106:153..667+ (Ectocarpus subulatus male Bft15b)
ATGTTGCCAGAAGCAGGTATGCCGTGTATTCCGGTGTTCGAGGATAACCA
GGCGGCTATTCAGTTGGCGCAGGTCCCGATTAGCAACAGTAACTCGAAGC
ACATCGACGTAAGGCACCACATTATCAGGGAACTGGCAGGCAGGAAAGAG
ATTTCGATTTTTCACGTGGAATCAGCGATTCAACATGCCGACTTCCTCAC
GAAGGCACTTCACGTCGGAGAGTTTGAGTTTCAACGTTATTTCGTGTTGA
GTCTGGGACAGGAACGGTAG back to top
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