EsuBft741_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft741_15a-0001
Unique NameEsuBft741_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:853282..853743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft741_15
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length46
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft741_15aEsuBft741_15aEctocarpus subulatus male Bft15bgeneScaffold_195 853282..853743 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_15a-0001-exonEsuBft741_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 853282..853743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_15a-0001-cdsEsuBft741_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 853282..853743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft741_15a-0001EsuBft741_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 853282..853743 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft741_15a-0001 ID=EsuBft741_15a-0001|Name=EsuBft741_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=462bp|location=Sequence derived from alignment at Scaffold_195:853282..853743+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTTGAACATGAACTGCTGCAGCTTGTGCGGGCAACTCTGCCAGC
TGAATATGACCTCGGAGACGTCGAGATGCACAGATCGGCTCAAAAGAAGT
ACCGCGTTGGTCTGAAGGCAAGGCACAGCAGTCAGCCGTTACTTCAGTGG
TACAGCAGCACCATCACCACGAAGTGTGCACGCGGCAGAAACAGAGACGC
CGAGTCCCGAGCTTTGGGAAGCATCAATAGAGAAACATGGCTAGACCTCG
CTGGAAAGACTTCCCAGCGTGCAGCGGTCCAGACACCACCCCCGCGAGTT
ATACCGGCCGTTAGATCGGCCTGTCCTGCACCTGGTTCGCTACGAGAACC
TGGCGCTGGCGGCGCGGAGAGATTGCGAAGTGCAGGGTGTGGCGGTGCAA
GAGAGGGCAGCGGACGGCCAAAAGGAGCACTGGGAAAAGCAGCCCGGCGA
GAAAGAGCNNNN
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protein sequence of EsuBft741_15a-0001

>EsuBft741_15 ID=EsuBft741_15|Name=EsuBft741_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=154bp
MVVEHELLQLVRATLPAEYDLGDVEMHRSAQKKYRVGLKARHSSQPLLQW
YSSTITTKCARGRNRDAESRALGSINRETWLDLAGKTSQRAAVQTPPPRV
IPAVRSACPAPGSLREPGAGGAERLRSAGCGGAREGSGRPKGALGKAARR
ERAX
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mRNA from alignment at Scaffold_195:853282..853743+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft741_15a-0001 ID=EsuBft741_15a-0001|Name=EsuBft741_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=462bp|location=Sequence derived from alignment at Scaffold_195:853282..853743+ (Ectocarpus subulatus male Bft15b)
ATGGTGGTTGAACATGAACTGCTGCAGCTTGTGCGGGCAACTCTGCCAGC
TGAATATGACCTCGGAGACGTCGAGATGCACAGATCGGCTCAAAAGAAGT
ACCGCGTTGGTCTGAAGGCAAGGCACAGCAGTCAGCCGTTACTTCAGTGG
TACAGCAGCACCATCACCACGAAGTGTGCACGCGGCAGAAACAGAGACGC
CGAGTCCCGAGCTTTGGGAAGCATCAATAGAGAAACATGGCTAGACCTCG
CTGGAAAGACTTCCCAGCGTGCAGCGGTCCAGACACCACCCCCGCGAGTT
ATACCGGCCGTTAGATCGGCCTGTCCTGCACCTGGTTCGCTACGAGAACC
TGGCGCTGGCGGCGCGGAGAGATTGCGAAGTGCAGGGTGTGGCGGTGCAA
GAGAGGGCAGCGGACGGCCAAAAGGAGCACTGGGAAAAGCAGCCCGGCGA
GAAAGAGCNNNN
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Coding sequence (CDS) from alignment at Scaffold_195:853282..853743+

>EsuBft741_15a-0001 ID=EsuBft741_15a-0001|Name=EsuBft741_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=462bp|location=Sequence derived from alignment at Scaffold_195:853282..853743+ (Ectocarpus subulatus male Bft15b)
ATGGTGGTTGAACATGAACTGCTGCAGCTTGTGCGGGCAACTCTGCCAGC
TGAATATGACCTCGGAGACGTCGAGATGCACAGATCGGCTCAAAAGAAGT
ACCGCGTTGGTCTGAAGGCAAGGCACAGCAGTCAGCCGTTACTTCAGTGG
TACAGCAGCACCATCACCACGAAGTGTGCACGCGGCAGAAACAGAGACGC
CGAGTCCCGAGCTTTGGGAAGCATCAATAGAGAAACATGGCTAGACCTCG
CTGGAAAGACTTCCCAGCGTGCAGCGGTCCAGACACCACCCCCGCGAGTT
ATACCGGCCGTTAGATCGGCCTGTCCTGCACCTGGTTCGCTACGAGAACC
TGGCGCTGGCGGCGCGGAGAGATTGCGAAGTGCAGGGTGTGGCGGTGCAA
GAGAGGGCAGCGGACGGCCAAAAGGAGCACTGGGAAAAGCAGCCCGGCGA
GAAAGAGCNNNN
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