EsuBft62_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft62_19a-0001
Unique Name	EsuBft62_19a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_195	contig	Scaffold_195:614291..617642 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft62_19
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Length	186
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft62_19a	EsuBft62_19a	Ectocarpus subulatus male Bft15b	gene	Scaffold_195 614291..617642 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft62_19a-0001	EsuBft62_19	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_195 614314..616803 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft62_19a-0001-exon	EsuBft62_19a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 614291..614420 +
EsuBft62_19a-0001-exon	agat-exon-18777	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 615326..615456 +
EsuBft62_19a-0001-exon	agat-exon-18776	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 615985..616428 +
EsuBft62_19a-0001-exon	agat-exon-18775	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 616481..617642 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft62_19a-0001-exon	agat-five_prime_utr-12403	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_195 614291..614313 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft62_19a-0001-cds	EsuBft62_19a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_195 614314..614420 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft62_19a-0001-exon	agat-three_prime_utr-19422	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_195 616804..617642 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_195:614291..617642+
coding sequence from alignment at Scaffold_195:614291..617642+

spliced messenger RNA

>EsuBft62_19a-0001 ID=EsuBft62_19a-0001|Name=EsuBft62_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1867bp|location=Sequence derived from alignment at Scaffold_195:614291..617642+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACAACTGCTGTGTTGTACTGAGATGGAGGGTAAAGAGGACAGCAGGAAG
CGCAAGCTTGCAGTGCTGAAGGCACGGCGTGAGCAGAGTAATCTGGCCAA
TGCCGCTCTGGCGGAGAAAGAAGACTCAAACAAGCGCGCCTCCCCACCCA
AGGAGAAAGAACGCCTGCCAGGGCCCGACGAGGTCTACGCCACGAGCGTC
TTCGGGTCGGTCGGGGGTGCGGCGGAAGTAGATGGTGGAAACGCCAACCC
GCTGGTCGTCGGATGGGGAACGGGAGATCTTCCGGCGCCAGCCGAGGGTG
AACTCCCTTCTCCTAATCCCCCTCGGTCTTTGGTGTCCCCAGGCGGCGGC
CCCAGTTCCCCTCCCCAACGTTTCCAGCAGTCGCCATCCCCCGGGAGTGG
TGGCGGGGGACGGCGTGGGCAGGGGACGCTGCAGCCGTTCCCTCGAGGCC
CCGTGACCCAGGGGTGGCCGGCGATGAACCCGGGTGTTGGTGCCTACTTC
GGCGGTCCTTCGCCGCCGCCGCACGGCCTGCCTACCAACCGGGGAGGCTC
TTGGCAGGGTATTGGGGGTCCGCCCTCGCTGCAGCAGGACTGGGGACGGC
CACCTCCGAGAGGCTTTGTTCAGCATCCGCCACCGCCGCCGCCGCCGCCG
CCGCCGCCGCAGCGGCAGCAGCAGATGAACTACTATCTTCCGGGGGACCC
GAGAGCGTTCTTCAGCAGCACCAGCAAGCCGAGCTTCACGGGATGGGCGG
GGGGCCGCATGCCGGGCCGGGGAGAGGAGGCATGGGAGGGGGGCGGGGAG
GCCGGGGGAGTCCACATGGAGGCCAACCCGTTCCCCCGCATCAACAAATG
GCGGCACATGGAGGGGGGGCAGGGCCGGGTCCCCCTCAGCCGATGTCGGC
CGGGGGGGGTTGGGCCCGCGGAAGAGGTGGGGGTGGGGGTGGAAGGGGGC
ACGGGACACAACACGGAGGGAGTGGTGGGAGAGGAGGAGGACGGGGTAGG
GGGCGTGGGGGGCGAGGAGGAGGAGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGAAGCAGATGGGCATTTCAAAAACTCGT
TTGTCGAAGACCCGTGGAAGCACTTGCTGGCGAGCGGGGCGCCACAACCT
TTTGTGTAGACACGTGACACATGTGAGGGCACGGGAGTACCGTGGCCTCA
ACGAGGTGGTTGGTTTTCCTCGGAACCGGATGGAAAAGTTTGGGCAAGAC
TTGATAGTCAATCCGTTGCGTTAAGGGTAATCGAGCGTGGTCTCGTGGAC
CAGTGCAATCTCAATCAAGCTTCACGATGGTTCCGTGTTTGTTTGTCACC
GCGTTCGGTGGCTAAAAATACTCGTGATGCTGTGACAGCGGAGCTCAGAG
AGGTTCTTCATGCCGAGGGGACGCTCTCAAGTTGCACGTGAGGAGCAGTA
ACACATCCAAGAACACTACTAGTTGGTCGCCCCTGTGGTTGCTTGGGTAA
CCTAATGTCGTGCCGATTGGGCGTGGGTTCGAGTCTTGGCGCAGTCACAC
GAAATTGGGACCTCCATGTCGCATCTTGATGCTGAATCAAGTAGGTATGT
GATGCTGTTAATTAGTGTGTGCTGGCTGTACCAACACACGGTGTTGCGGT
GGTCGACGAGAAAATGAAACGACTGAATCCTTGTCGCGCCGTTTATTTTG
GCAAGTACCATAGAGCGAAGGCAGACAAAATTACAAATGCCCTGTGGCAT
GCCTATTCCTGTAGCCCCGGCTAGTCCTTCAAGAGTATACCCATAAGTGT
TCAAGTCAGCGTCCTCG

protein sequence of EsuBft62_19a-0001

>EsuBft62_19 ID=EsuBft62_19|Name=EsuBft62_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=335bp
MEGKEDSRKRKLAVLKARREQSNLANAALAEKEDSNKRASPPKEKERLPG
PDEVYATSVFGSVGGAAEVDGGNANPLVVGWGTGDLPAPAEGELPSPNPP
RSLVSPGGGPSSPPQRFQQSPSPGSGGGGRRGQGTLQPFPRGPVTQGWPA
MNPGVGAYFGGPSPPPHGLPTNRGGSWQGIGGPPSLQQDWGRPPPRGFVQ
HPPPPPPPPPPPQRQQQMNYYLPGDPRAFFSSTSKPSFTGWAGGRMPGRG
EEAWEGGGEAGGVHMEANPFPRINKWRHMEGGQGRVPLSRCRPGGVGPAE
EVGVGVEGGTGHNTEGVVGEEEDGVGGVGGEEEEX

mRNA from alignment at Scaffold_195:614291..617642+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft62_19a-0001 ID=EsuBft62_19a-0001|Name=EsuBft62_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3352bp|location=Sequence derived from alignment at Scaffold_195:614291..617642+ (Ectocarpus subulatus male Bft15b)
CACAACTGCTGTGTTGTACTGAGATGGAGGGTAAAGAGGACAGCAGGAAG
CGCAAGCTTGCAGTGCTGAAGGCACGGCGTGAGCAGAGTAATCTGGCCAA
TGCCGCTCTGGCGGAGAAAGAAGACTCAAAGTGAGTAGATTGGTCGCTCT
CTAATCCTACTCTGCTATACTAAATCGGAGGTCTGTTGCGTTGGTTAGAC
TGCTGTGCGGAGCTGCTGTGCAATAACGACGGTCTGCAGGTGGCCCCAGC
GCCAACCAAGGCTTTCGCTCAAAGAACAAGGGCACATGTAAACCCCGATG
CGTTTCGGGGGGGAGGTTGACCTTTTCCTTGCTTCGGTCCCGATATATAT
TCTTTCCGACCGCCCGGCAACACAACGACCAACACTTGCAGCGCGTGATG
CAGCTCATCATCACCTATGCGTAACTCTGTACTGCTGGCATGTACAGCAG
TACATACACAGCAAACACAGCAACGACGGCAAGACGTTGTGAAGTACTCG
GTACATCCAAGGCGGACAACGTTTTTCGATGTCTGAAAGCAAGAAATGCC
AAGAGGTTGACGGATGTTTGAAATGACTCGTTGGAGATGAAAGGGCTGTG
CTTGCTAGATGCAGCCGCGACGGTGAGTAAGCCGACGCACTCAAGACAAC
TGAGGTGGATGCGATGTTTTCGATCTCTACATGGAAAAATGCCACGAAGC
ACATATATGGGCATCAAAAGCTACGCTTCAGAGATAACAGCAATCGCAGT
GTTGTGGGACGGGCATTTAGTTCTGAAGTTTACCCAGAAAGTTGCTTTAC
GTTTGAATCTTGAAGGTTCAGCAGTGGGGACTGGATCTGCTTCTCACTTA
GCCAGCTGCGTCTGCAGAATCCGAAGCACAATACGCCGAAGTCAGCCATC
GGTTCTGATTGGTGGGTCCATCAGCAGTCTCCGCTTTCCAAAAACATATT
CCGGCACTCCATATAGAACGCTGAACACGCCACCCTCTTGGCCTCCCTTC
CCACCGCACCCCCGTTTCCCACTACCCGCGAGCAGCAAGCGCGCCTCCCC
ACCCAAGGAGAAAGAACGCCTGCCAGGGCCCGACGAGGTCTACGCCACGA
GCGTCTTCGGGTCGGTCGGGGGTGCGGCGGAAGTAGATGGTGGAAACGCC
AACCCGCTGGTCGTCGGTGAGAAAGTTTATATCGATGCGATCGTGTGTAC
GTGTGTTATTCGCTGTTGTTCGAGGGACGCCAGCGATCCACGCGGCGGCG
CGCCAACCATGCGAGCAACGAACGCCTCGTCCCTTTGAACGAAGCCCGCG
GGCGCAGCGACTCGTTGCGCCCACGGCACCAACCCCTTGCTTCACGCGTC
GTAGAGAACTGTTGGCTCTGTTTTTTGAAACAATCCGTCGCGTTGGTGTC
TTCCGGGTCGCCACGCACCTGTCACCTTGCTGCGATCGAAATGTCACAAA
CGGGTTCCCTCACAGCAGGAACATTAGGGTTCAAATCCCTACTCCTCCAC
GTTTCCCCACTTGTGCACTGACTTCTCCCATTCGTTGAATTGCTTGTTTG
AACTCTTGGTTTTGTAGCGTAAGGGGGGCATACACAAGGGGGTTCACTCA
CTTTCGCGCGGATATACACCCAACATGCGGCGTTCTGGTTTCGTGTGAAA
CGCTCTTGAAGCCTGATGTCTCCTGACTTAATCCACGAAACCAGGATGGG
GAACGGGAGATCTTCCGGCGCCAGCCGAGGGTGAACTCCCTTCTCCTAAT
CCCCCTCGGTCTTTGGTGTCCCCAGGCGGCGGCCCCAGTTCCCCTCCCCA
ACGTTTCCAGCAGTCGCCATCCCCCGGGAGTGGTGGCGGGGGACGGCGTG
GGCAGGGGACGCTGCAGCCGTTCCCTCGAGGCCCCGTGACCCAGGGGTGG
CCGGCGATGAACCCGGGTGTTGGTGCCTACTTCGGCGGTCCTTCGCCGCC
GCCGCACGGCCTGCCTACCAACCGGGGAGGCTCTTGGCAGGGTATTGGGG
GTCCGCCCTCGCTGCAGCAGGACTGGGGACGGCCACCTCCGAGAGGCTTT
GTTCAGCATCCGCCACCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCGGCA
GCAGCAGATGAACTACTATCTTCCGGGGGACCCGAGAGGTGAGCACCCCC
CTCCCCCTCCAAAAGTTTTTATGCCTCCACAACAGCGGAGCGTTCTTCAG
CAGCACCAGCAAGCCGAGCTTCACGGGATGGGCGGGGGGCCGCATGCCGG
GCCGGGGAGAGGAGGCATGGGAGGGGGGCGGGGAGGCCGGGGGAGTCCAC
ATGGAGGCCAACCCGTTCCCCCGCATCAACAAATGGCGGCACATGGAGGG
GGGGCAGGGCCGGGTCCCCCTCAGCCGATGTCGGCCGGGGGGGGTTGGGC
CCGCGGAAGAGGTGGGGGTGGGGGTGGAAGGGGGCACGGGACACAACACG
GAGGGAGTGGTGGGAGAGGAGGAGGACGGGGTAGGGGGCGTGGGGGGCGA
GGAGGAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGAAGCAGATGGGCATTTCAAAAACTCGTTTGTCGAAGACCCGT
GGAAGCACTTGCTGGCGAGCGGGGCGCCACAACCTTTTGTGTAGACACGT
GACACATGTGAGGGCACGGGAGTACCGTGGCCTCAACGAGGTGGTTGGTT
TTCCTCGGAACCGGATGGAAAAGTTTGGGCAAGACTTGATAGTCAATCCG
TTGCGTTAAGGGTAATCGAGCGTGGTCTCGTGGACCAGTGCAATCTCAAT
CAAGCTTCACGATGGTTCCGTGTTTGTTTGTCACCGCGTTCGGTGGCTAA
AAATACTCGTGATGCTGTGACAGCGGAGCTCAGAGAGGTTCTTCATGCCG
AGGGGACGCTCTCAAGTTGCACGTGAGGAGCAGTAACACATCCAAGAACA
CTACTAGTTGGTCGCCCCTGTGGTTGCTTGGGTAACCTAATGTCGTGCCG
ATTGGGCGTGGGTTCGAGTCTTGGCGCAGTCACACGAAATTGGGACCTCC
ATGTCGCATCTTGATGCTGAATCAAGTAGGTATGTGATGCTGTTAATTAG
TGTGTGCTGGCTGTACCAACACACGGTGTTGCGGTGGTCGACGAGAAAAT
GAAACGACTGAATCCTTGTCGCGCCGTTTATTTTGGCAAGTACCATAGAG
CGAAGGCAGACAAAATTACAAATGCCCTGTGGCATGCCTATTCCTGTAGC
CCCGGCTAGTCCTTCAAGAGTATACCCATAAGTGTTCAAGTCAGCGTCCT
CG

Coding sequence (CDS) from alignment at Scaffold_195:614291..617642+

>EsuBft62_19a-0001 ID=EsuBft62_19a-0001|Name=EsuBft62_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1005bp|location=Sequence derived from alignment at Scaffold_195:614291..617642+ (Ectocarpus subulatus male Bft15b)
ATGGAGGGTAAAGAGGACAGCAGGAAGCGCAAGCTTGCAGTGCTGAAGGC
ACGGCGTGAGCAGAGTAATCTGGCCAATGCCGCTCTGGCGGAGAAAGAAG
ACTCAAACAAGCGCGCCTCCCCACCCAAGGAGAAAGAACGCCTGCCAGGG
CCCGACGAGGTCTACGCCACGAGCGTCTTCGGGTCGGTCGGGGGTGCGGC
GGAAGTAGATGGTGGAAACGCCAACCCGCTGGTCGTCGGATGGGGAACGG
GAGATCTTCCGGCGCCAGCCGAGGGTGAACTCCCTTCTCCTAATCCCCCT
CGGTCTTTGGTGTCCCCAGGCGGCGGCCCCAGTTCCCCTCCCCAACGTTT
CCAGCAGTCGCCATCCCCCGGGAGTGGTGGCGGGGGACGGCGTGGGCAGG
GGACGCTGCAGCCGTTCCCTCGAGGCCCCGTGACCCAGGGGTGGCCGGCG
ATGAACCCGGGTGTTGGTGCCTACTTCGGCGGTCCTTCGCCGCCGCCGCA
CGGCCTGCCTACCAACCGGGGAGGCTCTTGGCAGGGTATTGGGGGTCCGC
CCTCGCTGCAGCAGGACTGGGGACGGCCACCTCCGAGAGGCTTTGTTCAG
CATCCGCCACCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCGGCAGCAGCA
GATGAACTACTATCTTCCGGGGGACCCGAGAGCGTTCTTCAGCAGCACCA
GCAAGCCGAGCTTCACGGGATGGGCGGGGGGCCGCATGCCGGGCCGGGGA
GAGGAGGCATGGGAGGGGGGCGGGGAGGCCGGGGGAGTCCACATGGAGGC
CAACCCGTTCCCCCGCATCAACAAATGGCGGCACATGGAGGGGGGGCAGG
GCCGGGTCCCCCTCAGCCGATGTCGGCCGGGGGGGGTTGGGCCCGCGGAA
GAGGTGGGGGTGGGGGTGGAAGGGGGCACGGGACACAACACGGAGGGAGT
GGTGGGAGAGGAGGAGGACGGGGTAGGGGGCGTGGGGGGCGAGGAGGAGG
AGNNN