EsuBft1022_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1022_6a-0001
Unique NameEsuBft1022_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_103contigScaffold_103:264128..268530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LNX6
ProteomeIdEsuBft1022_6
Protein domainsG3DSA
Protein domainsPTHR22915
Ownerapollo_admin@sb-roscoff.fr
Noteexternal alternative nad h-ubiquinone oxidoreductase mitochondrial os:arabidopsis thaliana gn:n [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length991
Hectar predicted targeting categoryother localisation
Evalue4.4e-32
EggNOG OGsCOG1252@1|root,KOG2495@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K03885,ko:K17871
KEGG Pathwayko00190,map00190
EC1.6.5.9,1.6.99.3
DescriptionOxidoreductase
COG categoryC
BRITEko00000,ko00001,ko01000
Cross References
External references for this mRNA
DatabaseAccession
GO0005777
GO0006116
GO0031314
GO0003954
GO0001300
GO0009536
GO0005758
EC1.6.99.3
GO0019655
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1022_6aEsuBft1022_6aEctocarpus subulatus male Bft15bgeneScaffold_103 264128..268530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1022_6a-0001EsuBft1022_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_103 264747..268467 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1022_6a-0001-exonagat-exon-79158Ectocarpus subulatus male Bft15bexonScaffold_103 264128..264565 -
EsuBft1022_6a-0001-exonagat-exon-79159Ectocarpus subulatus male Bft15bexonScaffold_103 264713..264796 -
EsuBft1022_6a-0001-exonagat-exon-79155Ectocarpus subulatus male Bft15bexonScaffold_103 264887..264893 -
EsuBft1022_6a-0001-exonEsuBft1022_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_103 266433..266540 -
EsuBft1022_6a-0001-exonagat-exon-79157Ectocarpus subulatus male Bft15bexonScaffold_103 266825..266991 -
EsuBft1022_6a-0001-exonagat-exon-79160Ectocarpus subulatus male Bft15bexonScaffold_103 267105..267109 -
EsuBft1022_6a-0001-exonagat-exon-79156Ectocarpus subulatus male Bft15bexonScaffold_103 268349..268530 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1022_6a-0001-exonagat-three_prime_utr-227Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_103 264128..264565 -
EsuBft1022_6a-0001-exonagat-three_prime_utr-228Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_103 264713..264746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1022_6a-0001-cdsEsuBft1022_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_103 264747..264796 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1022_6a-0001-exonagat-five_prime_utr-134Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_103 268468..268530 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1022_6a-0001 ID=EsuBft1022_6a-0001|Name=EsuBft1022_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=991bp|location=Sequence derived from alignment at Scaffold_103:264128..268530- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGTTGCCGATCGGGCGATCGACACGGCCCAAGATATCTTGACGCACCC
CTCACGCGCCTTCATGCCGGCCGCCAAGATGAATCTGCCGCTCACCACTG
ACGGCATCGAGGATCCGTCGTGGCTGCCGGCCACCAAGAAGGAGCGGATC
GTCGTGCTGGGCATGGCCACGCCACCAGCAAGGTGGTGGTTGAATTGGCA
GCAAAACAAGCGGGAAGATCGGCAGCGACCGGTGAACCCCGACGATGCGA
GGCTTCTGATGGAGCTCTCCTACGACAAACTGGTGTACGCCATCGGAACA
GGAACGGGGACCTTCGGGGTCCCGGGGGTGCGAGAGAACTGCTACATGCT
CAAGGAGGCAAGCGACGCGCGACTGCTACGCGCCGCGATCGTTAACGTCC
TTGAGGAGGCGTGCTTGGCCGGGATGACGGACGAGGGGAAGGAAAAACTG
TTGTTCTTCGTGGGTAAGGGGTATTGTGGTGCGCCGTCACAGAACTTTCA
GAACTTTCGAGTTCTGTAAGCGAGCTGTCACAGAAAGTTCGGTAGGGTAC
TGGGGTCTGTCACAGAACTCACAGAGAAGTTCGGTAGGGTACTGGATCTG
TCACAGAACTCACAGAACTATAGGGTATTGTGGTGAGCCGTCACAGATCT
CACAGAACTTTCGAGTTCTGTAAGCGAGCTGAATGTTCTATTGGCTGTCC
GATACTCGACACATATTAATAAAGGTTGCTATGCGCGACGACATGCAGCG
AAACTCTTGATCATTTCATTTGGAAAACCCCAACAACAAACGTCACTATT
CCCCAAATTCTACTCACGTGTCCCATTGCCTTCATGTTTTTGTTGGTGAT
GAGGTGCCTCACGCACGCACGCCATGGCGCTTGCGGTAGAACCGCCCTGA
GGGCCGCCGGTGATCCTTTGTGACCGTCGATGAAGAACGTCACCTCGCCG
AACGAAAGAAGTCGATGCATGTGCTCGTTCCCGCAGGTCTG
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protein sequence of EsuBft1022_6a-0001

>EsuBft1022_6 ID=EsuBft1022_6|Name=EsuBft1022_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=151bp
MPAAKMNLPLTTDGIEDPSWLPATKKERIVVLGMATPPARWWLNWQQNKR
EDRQRPVNPDDARLLMELSYDKLVYAIGTGTGTFGVPGVRENCYMLKEAS
DARLLRAAIVNVLEEACLAGMTDEGKEKLLFFVGKGYCGAPSQNFQNFRV
L
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mRNA from alignment at Scaffold_103:264128..268530-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1022_6a-0001 ID=EsuBft1022_6a-0001|Name=EsuBft1022_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4403bp|location=Sequence derived from alignment at Scaffold_103:264128..268530- (Ectocarpus subulatus male Bft15b)
GCTGTTGCCGATCGGGCGATCGACACGGCCCAAGATATCTTGACGCACCC
CTCACGCGCCTTCATGCCGGCCGCCAAGATGAATCTGCCGCTCACCACTG
ACGGCATCGAGGATCCGTCGTGGCTGCCGGCCACCAAGAAGGAGCGGATC
GTCGTGCTGGGCATGGCCACGCCACCAGCAAGGTATGTTTATATCGCTGT
CTGGCCACTGCCAGACACAACAATCAAGTTCTCCGGGCTTGGTTTCATTC
ACGGCATTCAGGGTCGAACAAAGGAATGAATGCTGCAAGTTCCCGGATTG
GCATGCCATTTTCGGTCTAACCAAGAGAATGGGGGCCCTTTGGACGCTCG
TGTAAGGGTATGCTGTTATTGGTGAAGTCGAAGCCGCAACTGTAGTGCTT
TCTACAGCATGCTTTTTATAGCCATGTGGATCATGCGTTGTGGAGAGATA
ATCGTCTGTCCTGGGGTATCACGCTATCAGCGACGGGGATGGAAGCGGTT
GAAAGTGTCACGATTTCGTGGTTACTACTGTATTTTGTTGTTACCTGCAA
TACATTGCTGCATTATTGTTGCTTGCCTTGAGCATTTGACCGTTGCCAAA
TCACATCACCTTTAACAAGGGGCTTGTAGGCGGTCACGGGCTTGCTGGTG
TAGCTTTTGCGAAACGATCGAGAGGCATTCTATTGCTTTGTGCTTTGTCG
TTCGGGCATTTTTTACACGCCACGGACGTGCAAGCGGGGAAGGGCGAGGA
GTGCACACACGTTTGCTGTTGTGTTTCTTCGAACGACTGACGACAAGAGT
CTGAAGATGAAAGGCCAAGGAACGCAGGCTGGGTTCATTACTGAAGCCTA
ACTTTTGAGACACCTATCGCGGTTCCCTGCTACCTCTTTCGTAATTTACT
TGTGAGGCCAAGGTAATCGACAGTGACGTGTACGAGGTGATCTACGTCTC
GCCCCGTAACTACTTCGTGTTCACCCCGATGCTGGCCGCCTCGGCCGTCG
GCACCGTCGATGTAAGGTCCATGATGGAACCGATCAGGATGGCCAACCCC
TGCGTTTCATACGTGAGCGGGGAGGCCATCGACATCTTCCCCCGAGACAA
GATAGTCAGAGTTAGCGATTTAGGATACCGGCCTTGTGTGTTTTGTGAGA
TGTGTGCGACGTTTGATGCGAGATAAGTATGGATGTGCATCCTCGTGCTT
TACCGTGTTCGTCGTCGTGCATGTTTCGCTTCCCTTCGGGCACCCTCTGT
TGTGTCCTTAACATTGAAGCAGTTCCGAGTTCTATCCAGGTGTGCGTGCG
TGTGTGTGTGCATCATATTGTTTCCAGGCAACGACTTCAACTCTCGCTTC
TCTAGTCCCGTTGCCACGTTTTGGTTGCTTGTGTCTGCCCTTGCATGTAC
ATGCGCGAATGTGTATGGCAGGTGGTGTAAGCCCTCCCTTGTCCACGAGA
GCAACACCCACCTCAAGCCATAGAAAGTGCCGGCGCTTTGCCCCCCCCGC
TGTACACGAAGGGCAACCGGAAAGAAGCCGCAACGGCAGGGTTGAATTGG
CAGCAAAACAAGCGGGAAGATCGGCAGCGACCGGTGAACCCCGACGATGC
GAGGCTTCTGATGGAGCTCTCCTACGACAAACTGGTGTACGCCATCGGAA
CAGGAACGGGGACCTTCGGGGTCCCGGGGGTGCGAGAGAACTGCTACATG
CTCAAGGTGTGTACCGAGAGTATTCTGCCTTGCATCTCATGTTGGCCGCT
GGTAAGGACAAACGCCAGTACCGCAACCGCTCTGGTTCGCTTGTCTCGCT
TATCTTCGCTTTCTTCAGGCTCCGGCGCGCAGGGCGGGGAGCGATCATCG
TGTTCATGAGCGCCTGCGGGCCCCCCCCGGTCCTACGTGCTTGCTACGGG
GCTCGCTTCACAGAAGTAGCTCGAACAAAACCGATCTCAACCCTCCATGC
CCTTTCCTTGATGATCATGTTTGGATTGGTTCGAAAACAGGAGGCAAGCG
ACGCGCGACTGCTACGCGCCGCGATCGTTAACGTCCTTGAGGAGGCGTGC
TTGGCCGGGATGACGGACGAGGGGAAGGAAAAACTGTTGTTCTTCGTGGT
AAGAGAGGACCACTGGGCTGATGGTTGGTGGAGAGCAATGGTCCGGTTGG
TGGAGTACTGTGGAGGTTTGGTTTTCAGTCTCGAGGCAGCTGTCCCATGC
TCTGTCATACGACAACATGCAGAAAAGTAACTGGAGGGGAAACACCGCTG
CTATGAGATGGGCTATCGTTCAGCGACTGGGGGCAGCTGAATAGTTTGCC
GAAGCCACTTGTGGTAGATAGGTTCGAAGATTGCGATGATGACTTCTCAG
GCCGTGTTTGTTTTTTTCGCTGGGATGTTTTCAAAGTGAACCAAACTGCC
GGAGAAGGCGGAAGAAAAGCCGTCTGATACCGCCAACGTTTGCCCAGCTC
ATTCAGTTTTGGCTGTCGCTTCTCGCTCTGTAGTTATGTGCTGATCCGCG
ATCTCACAGCAGTATCACCAACTGACGCCAACGTCTGGATGCTGAGAAAC
TAAGGCATTGCTTCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNATCGGTGTTTGCCATCGGGATTGGGTTTTCGTCGCTTGGCAACGACGG
TATAAACAAGCCAATTCACGTCGTGAGCTCGGAATCCAGGTTACCGTTCT
GTTTTTTTCCTCTGCTTTTATATTGGAGGCCATTTGTTACGATGTCTTTT
TTTAGGCTGCCCTTTTTTCCCAAAAGAGACGTCCCTTTGCGCGATGCAAA
GAAGCTGCAGTTCATGAGACTGCACCATCCCTCACACCCTAACACGTGAT
CCGCTCAAACTACGCGTGAAGCGTCGTCGCAAGTAGCACACGACGTGTCC
CCCAATATACGGTACATGCGGTTTGCGAGAAATGGGCTGAAATTCCAACG
ACGAGGCAATATTGTAGCAAGGAAGAACTTTCCGGCTCTCTGGGGGGTGA
TGGTCAAGTTTTCGAGTTGGGCCAGTGCCTCATCGTGTGCACCTGGACTC
CACTAGCAGGGAAATGTTCCACGAGTAGGTTCTGTAGGGTAAGGGTACGT
TCGGTAGGGTACTGGGTCTGTCACAGAACTCACAGAAAAGTTCGGTTGGG
TGCTGGTTCTGTCACAGAACTCACAGAACTATAGGGTATTGTGGTGCGCC
GTCACAGAACTTTCAGAACTTTCGAGTTCTGTAAGCGAGCTGTCACAGAA
AGTTCGGTAGGGTACTGGGTCTGTCACAGAACTCACAAAACTATAGGGTA
TTGCGGCGCGACCTTCACAGAACTTGTTGTTGTTGTTGTTGTTGTTGTCG
GTGAAACTGGGTATCTTCCGGAGGGTACTAAATAGGGTAGGTTCTGTAGG
GTAAGGGTACGGTAGGGTCTGTCACAGAACTCACAGAGAAGTTCGGTAGG
GTACTGGATCTGTCACAGAACTCACAGAACTATAGGGTATTGTGGTGAGC
CGTCACAGATCTCACAGAACTTTCGAGTTCTGTAAGCGAGCTGAATGTTC
TATTGGCTGTCCGATACTCGACACATATTAATAAAGGTTGCTATGCGCGA
CGACATGCAGCGAAACTCTTGATCATTTCATTTGGAAAACCCCAACAACA
AACGTCACTATTCCCCAAATTCTACTCACGTGTCCCATTGCCTTCATGTT
TTTGTTGGTGATGAGGTGCCTCACGCACGCACGCCATGGCGCTTGCGGTA
GAACCGCCCTGAGGGCCGCCGGTGATCCTTTGTGACCGTCGATGAAGAAC
GTCACCTCGCCGAACGAAAGAAGTCGATGCATGTGCTCGTTCCCGCAGGT
CTG
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Coding sequence (CDS) from alignment at Scaffold_103:264128..268530-

>EsuBft1022_6a-0001 ID=EsuBft1022_6a-0001|Name=EsuBft1022_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=456bp|location=Sequence derived from alignment at Scaffold_103:264128..268530- (Ectocarpus subulatus male Bft15b)
ATGCCGGCCGCCAAGATGAATCTGCCGCTCACCACTGACGGCATCGAGGA
TCCGTCGTGGCTGCCGGCCACCAAGAAGGAGCGGATCGTCGTGCTGGGCA
TGGCCACGCCACCAGCAAGGTGGTGGTTGAATTGGCAGCAAAACAAGCGG
GAAGATCGGCAGCGACCGGTGAACCCCGACGATGCGAGGCTTCTGATGGA
GCTCTCCTACGACAAACTGGTGTACGCCATCGGAACAGGAACGGGGACCT
TCGGGGTCCCGGGGGTGCGAGAGAACTGCTACATGCTCAAGGAGGCAAGC
GACGCGCGACTGCTACGCGCCGCGATCGTTAACGTCCTTGAGGAGGCGTG
CTTGGCCGGGATGACGGACGAGGGGAAGGAAAAACTGTTGTTCTTCGTGG
GTAAGGGGTATTGTGGTGCGCCGTCACAGAACTTTCAGAACTTTCGAGTT
CTGTAA
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