EsuBft1077_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1077_2a-0001
Unique NameEsuBft1077_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:230738..231357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1077_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length62
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_2aEsuBft1077_2aEctocarpus subulatus male Bft15bgeneScaffold_195 230738..231357 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_2a-0001-exonEsuBft1077_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 230738..231357 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_2a-0001-exonagat-five_prime_utr-452Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 230738..230938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_2a-0001-cdsEsuBft1077_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 230939..231337 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_2a-0001-exonagat-three_prime_utr-725Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 231338..231357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_2a-0001EsuBft1077_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 230939..231337 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1077_2a-0001 ID=EsuBft1077_2a-0001|Name=EsuBft1077_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=620bp|location=Sequence derived from alignment at Scaffold_195:230738..231357+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCGTTTTAAACGGACCGACTTTTTTGTCAAAATTTTCGACATTTGTCTT
TCAAAAACTTGGAACCTGTGTGCAGTCATTTTAAACGTGTGACGTGGACT
TGTGCAACTTGTGTAAAAACAAATGACGCCGTCGGTGAGTTGTAGCGCTC
ACTTCGAGACAACACACACGACACAACACAAACCGCGGAAAACACGACAT
CATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGACCA
AAACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTAGGC
GGTGGAGGCTTGCTCTCCAGCAAGATAGTGCTGCTGCCTGGCATCTCGGG
GAACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCAGAGCG
AGGGTGGAGCAGGTCGCCGGCGAGGGGTGGCAACCACTGCTCCTACCCCC
CCGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAACTGCAAGC
CATCATGGCGGACCGCCGTTTTTCGGACCACACAGCAACAGCAAACAACA
TCGTCAACGTTGGCAACAGCGACGATAGCAATAGCGACAGCGACAGATGA
CTCACACACAACCCTAGCTG
back to top

protein sequence of EsuBft1077_2a-0001

>EsuBft1077_2 ID=EsuBft1077_2|Name=EsuBft1077_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=132bp
MDTDMDITTTQRGRQTKTPAKFQQTGSLGAAVGGGGLLSSKIVLLPGISG
NTHVTTGGAAATNTQSEGGAGRRRGVATTAPTPPGKGKNKAADAKQQLQA
IMADRRFSDHTATANNIVNVGNSDDSNSDSDR
back to top

mRNA from alignment at Scaffold_195:230738..231357+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1077_2a-0001 ID=EsuBft1077_2a-0001|Name=EsuBft1077_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=620bp|location=Sequence derived from alignment at Scaffold_195:230738..231357+ (Ectocarpus subulatus male Bft15b)
GCCGTTTTAAACGGACCGACTTTTTTGTCAAAATTTTCGACATTTGTCTT
TCAAAAACTTGGAACCTGTGTGCAGTCATTTTAAACGTGTGACGTGGACT
TGTGCAACTTGTGTAAAAACAAATGACGCCGTCGGTGAGTTGTAGCGCTC
ACTTCGAGACAACACACACGACACAACACAAACCGCGGAAAACACGACAT
CATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGACCA
AAACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTAGGC
GGTGGAGGCTTGCTCTCCAGCAAGATAGTGCTGCTGCCTGGCATCTCGGG
GAACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCAGAGCG
AGGGTGGAGCAGGTCGCCGGCGAGGGGTGGCAACCACTGCTCCTACCCCC
CCGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAACTGCAAGC
CATCATGGCGGACCGCCGTTTTTCGGACCACACAGCAACAGCAAACAACA
TCGTCAACGTTGGCAACAGCGACGATAGCAATAGCGACAGCGACAGATGA
CTCACACACAACCCTAGCTG
back to top

Coding sequence (CDS) from alignment at Scaffold_195:230738..231357+

>EsuBft1077_2a-0001 ID=EsuBft1077_2a-0001|Name=EsuBft1077_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=399bp|location=Sequence derived from alignment at Scaffold_195:230738..231357+ (Ectocarpus subulatus male Bft15b)
ATGGACACCGACATGGATATCACGACCACCCAGCGTGGCCGGCAGACCAA
AACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCGCCGTAGGCG
GTGGAGGCTTGCTCTCCAGCAAGATAGTGCTGCTGCCTGGCATCTCGGGG
AACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACACTCAGAGCGA
GGGTGGAGCAGGTCGCCGGCGAGGGGTGGCAACCACTGCTCCTACCCCCC
CGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAACTGCAAGCC
ATCATGGCGGACCGCCGTTTTTCGGACCACACAGCAACAGCAAACAACAT
CGTCAACGTTGGCAACAGCGACGATAGCAATAGCGACAGCGACAGATGA
back to top