Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FI08 |
| ProteomeId | EsuBft1022_3 |
| Protein domains | IPR004875 |
| Protein domains | PTHR19303 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | pogo transposable element with krab domain os:homo sapiens gn:pogk pe:1 sv:2 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 943 |
| Evalue | 2.22e-84 |
| EggNOG OGs | 2DCSR@1|root,2S5KN@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1022_3a-0001 ID=EsuBft1022_3a-0001|Name=EsuBft1022_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=943bp|location=Sequence derived from alignment at Scaffold_103:245705..246800+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGACATCCCGGACGGGTTTCGACTCNACTTCGTGAAGGAGCTGAGGGA
CAACGCCGACCAGGTACCGTTGGGGTTCGTGACCGGGCAGGAAGACACCT
GGGACAAACGAGGGGCGAAGCGTGTGCATGTTGGCCAGCCATTCCCCGGC
TTGGAGAAGCGGCAGTGCACGGTGCAACCGACGACGGGAGCAGGAGGGAA
AAAGACGAGGTGCGCGACCATCTTCCGCGGCAAAGGAACCGGCATCACCA
AGGTGGAGAAGGCAGCATACGACAAGCGCCTAGATGTCTTCTTTCAGCCC
AAGGCCTGGGCCGACAGCGACTTCTGCATGCAATGGCTGGAGCGCTCTTT
TCGCCCGAGCCGAATGGTAGACGGGAAGGTGCCCGAGGAGCAGTCGCTTC
TTCTCGCCGACAACCTGCACGGGCAGACGACTGAGGAATTCCGCAAGTAC
GAGGAGTGCAACACGTTTTTTTGGCACCTGCCGGCAGGCTGTACGGACGA
GGTCCAGCCGATCGACGCCGGCTATGGACGGCGGCTGAAGGTGGCTGTGG
GGGTGCAGCTGGACAAGTGGCTGGAGAGCGGAGACAACCTGCAAAAGTGG
GAGGCCAAAGCACTGACGTGTTCCGAACGTCGCTTGTTGCTTACCAGTTG
GGTGGCACAGGCGACCGAGGAGATCGATAAACAAGAGCAATATCGGATCC
GTCTCTTCGAGAAAACCGGATGTGGAATGACGGCGGATGGCTCTGGGGAC
GACAATTCAACCTCGAGGGCCTTTCCACATATTCCTTCATGGATGTGGAG
GGTGGCGCCAGCGCTGATGAGGAGGGCAAGGAGGATGGGGACACCAGCAA
GGTTGACGTGGACCAGCTGTCGGAAGACGCCTCTTCCAGCGTTGACGAGA
GCGATGGAGACGATGACAACGATGAGGATCCGCTGACCTAGCT back to topprotein sequence of EsuBft1022_3a-0001 >EsuBft1022_3 ID=EsuBft1022_3|Name=EsuBft1022_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=311bp
MDIPDGFRLXFVKELRDNADQVPLGFVTGQEDTWDKRGAKRVHVGQPFPG
LEKRQCTVQPTTGAGGKKTRCATIFRGKGTGITKVEKAAYDKRLDVFFQP
KAWADSDFCMQWLERSFRPSRMVDGKVPEEQSLLLADNLHGQTTEEFRKY
EECNTFFWHLPAGCTDEVQPIDAGYGRRLKVAVGVQLDKWLESGDNLQKW
EAKALTCSERRLLLTSWVAQATEEIDKQEQYRIRLFEKTGCGMTADGSGD
DNSTSRAFPHIPSWMWRVAPALMRRARRMGTPARLTWTSCRKTPLPALTR
AMETMTTMRIR back to topmRNA from alignment at Scaffold_103:245705..246800+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1022_3a-0001 ID=EsuBft1022_3a-0001|Name=EsuBft1022_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1096bp|location=Sequence derived from alignment at Scaffold_103:245705..246800+ (Ectocarpus subulatus male Bft15b)
ATGGACATCCCGGACGGGTTTCGACTCNACTTCGTGAAGGAGCTGAGGGA
CAACGCCGACCAGGTACCGTTGGGGTTCGTGACCGGGCAGGAAGACACCT
GGGACAAACGAGGGGCGAAGCGTGTGCATGTTGGCCAGCCATTCCCCGGC
TTGGAGAAGCGGCAGTGCACGGTGCAACCGACGACGGGAGCAGGAGGGAA
AAAGACGAGGTGCGCGACCATCTTCCGCGGCAAAGGAACCGGCATCACCA
AGGTGGAGAAGGCAGCATACGACAAGCGCCTAGATGTCTTCTTTCAGCCC
AAGGCCTGGGCCGACAGCGACTTCTGCATGCAATGGCTGGAGCGCTCTTT
TCGCCCGAGCCGAATGGTAGACGGGAAGGTGCCCGAGGAGCAGTCGCTTC
TTCTCGCCGACAACCTGCACGGGCAGACGACTGAGGAATTCCGCAAGTAC
GAGGAGTGCAACACGTTTTTTTGGCACCTGCCGGCAGGCTGTACGGACGA
GGTCCAGCCGATCGACGCCGGCTATGGACGGCGGCTGAAGGTGGCTGTGG
GGGTGCAGCTGGACAAGTGGCTGGAGAGCGGAGACAACCTGCAAAAGTGG
GAGGCCAAAGCACTGACGTGTTCCGAACGTCGCTTGTTGCTTACCAGTTG
GGTGGCACAGGCGACCGAGGAGATCGATAAACAAGAGCAATATCGGATCC
GTCTCTTCGAGAAAACCGGATGTGGAATGACGGCGGATGGCTCTGGGGAC
GACAATTCAACCTCGAGGGCCTTTCCACATATTCCTTCATGGATGTGGAG
GGTGGCGCCAGCGCTGATGAGGAGGGCAAGGAGGATGGGGACACCAGCAA
GGTTGACGTGGACCAGCTGTCGGAAGACGCCTCTTCCAGCGTTGACGAGA
GCGATGGTTAGTGGTATTATATTTCGCGTTCATTCGGAGCACAGAAGAAT
TACCCTTGCGGAAGAAAGCTCCTCTTGACACATTAATGAGTTTTGGAATG
TTGTCCCCGCTTCGGGAATCGCCACAACAATAGACGATGCCTCCGCTGTG
CCTTGTCAGGAGACGATGACAACGATGAGGATCCGCTGACCTAGCT back to topCoding sequence (CDS) from alignment at Scaffold_103:245705..246800+ >EsuBft1022_3a-0001 ID=EsuBft1022_3a-0001|Name=EsuBft1022_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=936bp|location=Sequence derived from alignment at Scaffold_103:245705..246800+ (Ectocarpus subulatus male Bft15b)
ATGGACATCCCGGACGGGTTTCGACTCNACTTCGTGAAGGAGCTGAGGGA
CAACGCCGACCAGGTACCGTTGGGGTTCGTGACCGGGCAGGAAGACACCT
GGGACAAACGAGGGGCGAAGCGTGTGCATGTTGGCCAGCCATTCCCCGGC
TTGGAGAAGCGGCAGTGCACGGTGCAACCGACGACGGGAGCAGGAGGGAA
AAAGACGAGGTGCGCGACCATCTTCCGCGGCAAAGGAACCGGCATCACCA
AGGTGGAGAAGGCAGCATACGACAAGCGCCTAGATGTCTTCTTTCAGCCC
AAGGCCTGGGCCGACAGCGACTTCTGCATGCAATGGCTGGAGCGCTCTTT
TCGCCCGAGCCGAATGGTAGACGGGAAGGTGCCCGAGGAGCAGTCGCTTC
TTCTCGCCGACAACCTGCACGGGCAGACGACTGAGGAATTCCGCAAGTAC
GAGGAGTGCAACACGTTTTTTTGGCACCTGCCGGCAGGCTGTACGGACGA
GGTCCAGCCGATCGACGCCGGCTATGGACGGCGGCTGAAGGTGGCTGTGG
GGGTGCAGCTGGACAAGTGGCTGGAGAGCGGAGACAACCTGCAAAAGTGG
GAGGCCAAAGCACTGACGTGTTCCGAACGTCGCTTGTTGCTTACCAGTTG
GGTGGCACAGGCGACCGAGGAGATCGATAAACAAGAGCAATATCGGATCC
GTCTCTTCGAGAAAACCGGATGTGGAATGACGGCGGATGGCTCTGGGGAC
GACAATTCAACCTCGAGGGCCTTTCCACATATTCCTTCATGGATGTGGAG
GGTGGCGCCAGCGCTGATGAGGAGGGCAAGGAGGATGGGGACACCAGCAA
GGTTGACGTGGACCAGCTGTCGGAAGACGCCTCTTCCAGCGTTGACGAGA
GCGATGGAGACGATGACAACGATGAGGATCCGCTGA back to top
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