EsuBft1077_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1077_5a-0001
Unique NameEsuBft1077_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:213359..216920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog1282876.BAOK01000001_gene2961
ProteomeIdEsuBft1077_5
Protein domainsIPR006145
Protein domainsIPR018496
Protein domainsIPR020103
Protein domainsIPR002942
Protein domainsSSF55174
Protein domainsPTHR21600
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized rna pseudouridine synthase rc0807 os:rickettsia conorii (strain atcc vr-613 malish 7) gn:rc0807 pe:3 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl28211|Alphaproteobacteria
Length1234
Hectar predicted targeting categoryother localisation
Evalue1.45e-33
EggNOG OGsCOG1187@1|root,COG1187@2|Bacteria,1MUCE@1224|Proteobacteria,2TQP2@28211|Alphaproteobacteria,4BP8I@82117|unclassified Alphaproteobacteria
Ec32 ortholog descriptionRNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom
Ec32 orthologEc-15_000880.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred namerluB
KEGG koko:K06178
EC5.4.99.22
DescriptionS4 RNA-binding domain
COG categoryJ
BRITEko00000,ko01000,ko03009
Cross References
External references for this mRNA
DatabaseAccession
GO0001522
GO0003723
GO0009982
GO0006364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_5aEsuBft1077_5aEctocarpus subulatus male Bft15bgeneScaffold_195 213359..216920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_5a-0001EsuBft1077_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 213359..215737 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_5a-0001-exonEsuBft1077_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 213359..213388 -
EsuBft1077_5a-0001-exonagat-exon-79848Ectocarpus subulatus male Bft15bexonScaffold_195 213580..213702 -
EsuBft1077_5a-0001-exonagat-exon-79847Ectocarpus subulatus male Bft15bexonScaffold_195 214308..214463 -
EsuBft1077_5a-0001-exonagat-exon-79849Ectocarpus subulatus male Bft15bexonScaffold_195 215144..215988 -
EsuBft1077_5a-0001-exonagat-exon-79850Ectocarpus subulatus male Bft15bexonScaffold_195 216841..216920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_5a-0001-cdsEsuBft1077_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 213359..213388 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1077_5a-0001-exonagat-five_prime_utr-455Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 215738..215988 -
EsuBft1077_5a-0001-exonagat-five_prime_utr-456Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 216841..216920 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1077_5a-0001 ID=EsuBft1077_5a-0001|Name=EsuBft1077_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1234bp|location=Sequence derived from alignment at Scaffold_195:213359..216920- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGGCTGGACTGCCAGCTGCCAGGCTGCTGCCTGCTACTGCTGTCGCTACT
ACTACCTTGTTGCGGTGGTTTTCTCAAGAGGAATGCTATCTATCGCGCGG
CGCGTGCGAGGCCCATGCCGCCGCGGCGAAGCACATGCGGCGAGGGCTGC
CTTGGAGACAACGACAGCAGCAGCGGCGTCCTGCCGGCGATCCGTTCCGG
GTGCCGGTCTCCACCTCCTCCGCTTCCTCCGAAGCACGGCAGGACCCACG
CCCACGCCACACAGCAGTAGACAGCCACCTCTTGCGATAAGACATCGTCA
CTCTCCTGTTGGTGCAGCGGCGGGGGCAACAATGCCCCCGTGCCCACCAT
GTCGGGCGATGGCTGCGTCTGCGACGGCTAGTGGCCCGGACGTCATGGCG
GGGCGGCTGCAGGGCAGTGACGAGGCAGACGTCCGTGCTGCCGGCGGGAG
GGAGGAGCAGGAGGAAGGAGCTGGTGCATCTCACGGCCTGATCGGCGGGG
TAGAATATCTACTCACAACGGAGGCGGGGGATGACGACGGCGGAGATGTC
GACCAATCAGCAACGGAGGCCGAGCCAGACGACGACGATGTCGACCAATC
AGCAACGGCCACCGAGCCCGGGTACGGGGAGGCGTTACCGCCGCCAAAGA
TCAAAGACCCGTCCGTGATGCGCCTATCTCGCCGCATCGCGAGGTCCGGC
ATAGCTTCTCGGCGTGAGGCCGAGCGTATGGTCGAGGCGGGGGTGGTAAT
GGTGAACGGAGCGACGGTGCAAACTCCGGCGCTGAACGTCGGCCCACGAG
ACATCGTCAAAGTCAATGTGGGTTTATTCCTGCAGCTGGGGAATGGGGCT
GATTATCGCTTTTTCGTCCAGGTGGACTTTGATGCACTGCTATTGTGCTT
ATCATATCTTAGCGATACGGCATTGGGGAAGGTGCTGGAAAGGCCGGAAA
GCCACACGCCGAAGCTGTGGATGGTGCACAAGATGAGGAACGAGCTGGTC
ACGCGAGACGACCCGGAAGGGCGTCCGACCGTGTTCGACAGGCTGGCCAA
GCTCAAGCTGCCCGACACGCTGATGCCAGTGGGCCGGCTAGACTACAACA
CGGAAGGCCTCCTGCTGCTGACGAATGACGGGGACCTAGCACGCAAGATG
GAGCTTCCGAGCAGCAACATCGTGCGCACCTACTCCGTTCGAGTCTACGG
CAACGGATCGAATGTTCAAGTTATGTTATTTTAG
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protein sequence of EsuBft1077_5a-0001

>EsuBft1077_5 ID=EsuBft1077_5|Name=EsuBft1077_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=300bp
MPPCPPCRAMAASATASGPDVMAGRLQGSDEADVRAAGGREEQEEGAGAS
HGLIGGVEYLLTTEAGDDDGGDVDQSATEAEPDDDDVDQSATATEPGYGE
ALPPPKIKDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPA
LNVGPRDIVKVNVGLFLQLGNGADYRFFVQVDFDALLLCLSYLSDTALGK
VLERPESHTPKLWMVHKMRNELVTRDDPEGRPTVFDRLAKLKLPDTLMPV
GRLDYNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNGSNVQVMLF
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mRNA from alignment at Scaffold_195:213359..216920-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1077_5a-0001 ID=EsuBft1077_5a-0001|Name=EsuBft1077_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3562bp|location=Sequence derived from alignment at Scaffold_195:213359..216920- (Ectocarpus subulatus male Bft15b)
CGGCTGGACTGCCAGCTGCCAGGCTGCTGCCTGCTACTGCTGTCGCTACT
ACTACCTTGTTGCGGTGGTTTTCTCAAGAGGTGAGGTCATTGGGTCGAAG
ACACGTGAATAGGCTCACGAAGAATGAGCTAGTGACGAGAACACCCACAA
CGTGAAGCTACTCCTGCAATATAGGTACCAACATCGTTGGAGCGAGACGG
CGAAGACAACGGCACCAACCTCACACCAGAAACTAACGGCCTGCTGTGAT
ACTGCTCGACGGATGACGACAAAATCGTTGCCATACACGACTGCTGTGCC
CTAGTCTTAGGTTTGGTCTGATGGTGTAGTCACGGGCTTGTCGAGTTCTC
TGAGAGTGCAGTCCGTCGGTACATACTCCTGACAGCTTTGTGCGGCGCTG
CGGCGGTTTGCCCATAGATCTACAGCACACAAGACAGCACACAAGAGCAA
CCAGCTAGATTGGAGTTGTTTTAAATATCAATGGGTAAACAGCATTAGGG
CAAGACACAGACTGCTGTTGTGCCATATGCATAGCGATACACCGCTTTTG
GTTTTTCCGCTCGAATACTTGGGTTTCCAAATTTCAATGTCTCCCCTGGT
TGCAGGTCGCACGCGTTTTCTGCCTCAGAGGTGCCTCTCGGTGACCGCTG
GCTGACCCTTGCGACGGCTGACCCGTGTCGCCGACACGAGGGTGGTGCGC
ACGTTCCGCGATGCGGTTTCAATTCGCACCACTGCACGTGGCGAAATTTG
TTGTTGCTTCAGGGCTGCCACTGCCATGAATGCACCGAAGCGAATTGTTT
CTCCGCGACTACTGCCTCATACGTCACAGCCCTTGCCCACGGCCACCCTG
TCTTTCGGATGTCTTTATCCCTCGCGCTTACGGCGCCTGCCTCCCCCACG
CAACTCAATTTCGTCCAAACGAAACACGGCAGGAATGCTATCTATCGCGC
GGCGCGTGCGAGGCCCATGCCGCCGCGGCGAAGCACATGCGGCGAGGGCT
GCCTTGGAGACAACGACAGCAGCAGCGGCGTCCTGCCGGCGATCCGTTCC
GGGTGCCGGTCTCCACCTCCTCCGCTTCCTCCGAAGCACGGCAGGACCCA
CGCCCACGCCACACAGCAGTAGACAGCCACCTCTTGCGATAAGACATCGT
CACTCTCCTGTTGGTGCAGCGGCGGGGGCAACAATGCCCCCGTGCCCACC
ATGTCGGGCGATGGCTGCGTCTGCGACGGCTAGTGGCCCGGACGTCATGG
CGGGGCGGCTGCAGGGCAGTGACGAGGCAGACGTCCGTGCTGCCGGCGGG
AGGGAGGAGCAGGAGGAAGGAGCTGGTGCATCTCACGGCCTGATCGGCGG
GGTAGAATATCTACTCACAACGGAGGCGGGGGATGACGACGGCGGAGATG
TCGACCAATCAGCAACGGAGGCCGAGCCAGACGACGACGATGTCGACCAA
TCAGCAACGGCCACCGAGCCCGGGTACGGGGAGGCGTTACCGCCGCCAAA
GATCAAAGACCCGTCCGTGATGCGCCTATCTCGCCGCATCGCGAGGTCCG
GCATAGCTTCTCGGCGTGAGGCCGAGCGTATGGTCGAGGCGGGGGTGGTA
ATGGTGAACGGAGCGACGGTGCAAACTCCGGCGCTGAACGTCGGCCCACG
AGACATCGTCAAAGTCAATGTGGGTTTATTCCTGCAGCTGGGGAATGGGG
CTGATTATCGCTTTTTCGTCCAGGTGGACTTTGATGCACTGCTATTGTGC
TTATCATATCTTAGCGATACGGCATTGGTTCGTGCTTCAAGCCGAAGGCG
TAGTGCGGTTGCGGCCTTTGCGAGTGTTCGGCGGCCAATTGTGTGCCACA
TGGGTCTCGCGTTCTGTGCAGGCGGGACTTCCCTCCTTTTTTTTTCGCAT
CTTGCTTTTCTTGTGTCGTAGTTCGCGTGGAGGAGCACCCCCCTCTCTGC
GGGTGTTGTTTTTCTCGTTCTAGTTTCGTTGTTTTGCTGCCTGTCTGGAG
ACCACGCGGCTGTTTGGTAAAAGAATCAGCGGCGCTGTGTTCAATGTGGA
GTGTTCGGTCAGGAAGCATTCTCTCTCCTGCTGTTAGTGAAGGACCCACT
CGTTTTGTTGCAGCGTGGATTACGTTCGCGCCTGCAACCTCCAATTCACT
CCCGTGTTAACACACGTACCTTGGAACCGTAGTTGTACCAAGAACCCTTC
GCAGCTTCGGTTGAGGGTTCTGGACATAATGCAGGCTCGTAGTTCGTTGA
TCGGAGGTGCGCCACTGCTGTTGTCGGTCTCATGCACCCCGTGCCTGCCC
GTCTGGTCACCAAGGATAATACCTACGGAGCCCCCGTGTGACATTACTGA
CATGAGCATCACCTCCGCACTCAATCGATCACGAGCTTGTCCCACTTCCC
GTCTCGTACGTTTCCGCCTGCTTCGCCCTACGCGATGCCGTACCTTTGTC
GCGGCAGGGGAAGGTGCTGGAAAGGCCGGAAAGCCACACGCCGAAGCTGT
GGATGGTGCACAAGATGAGGAACGAGCTGGTCACGCGAGACGACCCGGAA
GGGCGTCCGACCGTGTTCGACAGGCTGGCCAAGCTCAAGCTGCCCGACAC
GCTGATGCCAGTGGTGCGCTAACTTCCCACGCACACACGTGATGTTTATT
TTTGTGGTGCCCGTCTTTTTTTTTTTGTTCGTTGGTGCTTGTTGTAGGTT
GACTGCCGTGCGCGCTTCGAGCAAGCCGACGTGCCCCGCAGGCGAGAGGG
TATGCTACTGCTGCAGTTTGTGCCTTGGTTCCATTCTTAGGCGACGGATG
GAAAGCGTGGAGCAATGTTGTTAGTGTTCGGCAGCTGTCGAGAAAAGAGG
TGGGGCCTGTCTTTGCCCCCTCCCTGGCCCTTCCCTCTCTCTAATACGTG
TGCTTGCCGCTGCGACCACAGGCTGTGGGTGTTGGGCTAGAACGCGCTCT
CCACACAACCGCCTGGTTTGTTTCTTCGAGACGTTCAGAGTAACAATATT
CTGCGGAGATCCCCTAACCCAAAGGGTACAATCTCCCCGAAAGGGTACAA
ATTTCCCCAGAAGGGTACAATCTTCCTAGAAGTGTACAACCCGCAAAGGG
TACGATGTCCCAGAAGGGTACAATGTACCCAAGAGGGTACGATCTCCCCA
AACGTCTGCCGAGGATGACTCCCTCTTTTCACAACCCGTTTCTTTGTATT
TTCTCTCGAACATCTTAGGGCCGGCTAGACTACAACACGGAAGGCCTCCT
GCTGCTGACGAATGACGGGGACCTAGCACGCAAGATGGAGCTTCCGAGCA
GCAACATCGTGCGCACCTACTCCGTTCGAGTCTACGGCAACGTAAGCCCC
CCCCCCCCCCTCGCCTTTCTCAGAACCCGTGTCCCATGTGCGTTGTTGAT
CGCTTGCGCTCTGGAGCGTTCATCGACGATGGTCTGTTGGCCGTCTGTGA
AGACCAGCGTGGGGCTCTGTATGTTTAGCCGCACGCACAAGGCTGGTTGC
CCTGTAACATGTCAGACGAAATCGCGTGACAGGGATCGAATGTTCAAGTT
ATGTTATTTTAG
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Coding sequence (CDS) from alignment at Scaffold_195:213359..216920-

>EsuBft1077_5a-0001 ID=EsuBft1077_5a-0001|Name=EsuBft1077_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=903bp|location=Sequence derived from alignment at Scaffold_195:213359..216920- (Ectocarpus subulatus male Bft15b)
ATGCCCCCGTGCCCACCATGTCGGGCGATGGCTGCGTCTGCGACGGCTAG
TGGCCCGGACGTCATGGCGGGGCGGCTGCAGGGCAGTGACGAGGCAGACG
TCCGTGCTGCCGGCGGGAGGGAGGAGCAGGAGGAAGGAGCTGGTGCATCT
CACGGCCTGATCGGCGGGGTAGAATATCTACTCACAACGGAGGCGGGGGA
TGACGACGGCGGAGATGTCGACCAATCAGCAACGGAGGCCGAGCCAGACG
ACGACGATGTCGACCAATCAGCAACGGCCACCGAGCCCGGGTACGGGGAG
GCGTTACCGCCGCCAAAGATCAAAGACCCGTCCGTGATGCGCCTATCTCG
CCGCATCGCGAGGTCCGGCATAGCTTCTCGGCGTGAGGCCGAGCGTATGG
TCGAGGCGGGGGTGGTAATGGTGAACGGAGCGACGGTGCAAACTCCGGCG
CTGAACGTCGGCCCACGAGACATCGTCAAAGTCAATGTGGGTTTATTCCT
GCAGCTGGGGAATGGGGCTGATTATCGCTTTTTCGTCCAGGTGGACTTTG
ATGCACTGCTATTGTGCTTATCATATCTTAGCGATACGGCATTGGGGAAG
GTGCTGGAAAGGCCGGAAAGCCACACGCCGAAGCTGTGGATGGTGCACAA
GATGAGGAACGAGCTGGTCACGCGAGACGACCCGGAAGGGCGTCCGACCG
TGTTCGACAGGCTGGCCAAGCTCAAGCTGCCCGACACGCTGATGCCAGTG
GGCCGGCTAGACTACAACACGGAAGGCCTCCTGCTGCTGACGAATGACGG
GGACCTAGCACGCAAGATGGAGCTTCCGAGCAGCAACATCGTGCGCACCT
ACTCCGTTCGAGTCTACGGCAACGGATCGAATGTTCAAGTTATGTTATTT
TAG
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