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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 103372.F4WU88 |
| ProteomeId | EsuBft3261_3 |
| Protein domains | PTHR13476 |
| Protein domains | IPR015418 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | Scaffold_omatin modification-related protein meaf6 os:danio rerio gn:meaf6 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 418 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.23e-07 |
| EggNOG OGs | KOG3856@1|root,KOG3856@2759|Eukaryota,39U1C@33154|Opisthokonta,3BEQC@33208|Metazoa,3CVKX@33213|Bilateria,41ZHD@6656|Arthropoda,3SMK4@50557|Insecta,46GKZ@7399|Hymenoptera |
| Ec32 ortholog description | Eaf6 NuA4 complex protein |
| Ec32 ortholog | Ec-26_004380.1 |
| Date last modified | 2016-07-26 |
| Date creation | 2016-06-14 |
| Preferred name | MEAF6 |
| KEGG ko | ko:K11344 |
| GOs | GO:0000123,GO:0000775,GO:0000776,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009966,GO:0009987,GO:0010646,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0023051,GO:0031248,GO:0031974,GO:0031981,GO:0032991,GO:0035267,GO:0036211,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0043968,GO:0043981,GO:0043982,GO:0043983,GO:0044154,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051276,GO:0051726,GO:0065007,GO:0070013,GO:0070775,GO:0070776,GO:0071704,GO:0071840,GO:0098687,GO:1901564,GO:1901796,GO:1902493,GO:1902494,GO:1902531,GO:1902562,GO:1990234 |
| Description | Histone acetyltransferase subunit NuA4 |
| COG category | S |
| BRITE | ko00000,ko03036 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
| GO | 0043968 |
| GO | 0005813 |
| GO | 0005737 |
| GO | 0070776 |
| GO | 0044154 |
| GO | 0043981 |
| GO | 0035267 |
| GO | 0043982 |
| GO | 0043983 |
| GO | 0043984 |
| GO | 0005730 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft3261_3a-0001 ID=EsuBft3261_3a-0001|Name=EsuBft3261_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=418bp|location=Sequence derived from alignment at Scaffold_103:27624..28041+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCTCCTGTTACTCACTGTCATCACTGGCACCACACTAGTCGTGGGCCTC
GATCGGCCCTAAGGGACGCAGCAGAATAAATGGCAAAAGAGGCGGCGGCA
AAGGGCTCTGCAGCCTCGGTGGACGTCCGACCCTCGGAGACGCCCAAGGA
CCTGAAGAAGAGGGTAAGGGGTCTGGACAAGTCGCTCACCAGCGTGCACG
AGCGCTTGGTGCAGACCGAGAAGCAGATCTTCGACCTAGAGCGTAGCTAT
CTCGAGGAGACCAGGCTCTACGGAAACGTGCTCCAGGGCTGGGATGCGTA
CCTCGACACCAAGGGGAAGGGAGTAGCAGCAGGCGGGAAGGGCGAGGCGG
CGGCTGGGGGACGAGGAGGGGTCAACATGCGAGAGGTAGCTTCTGAAGAC
GGGGAGGAAGGTATGTAG back to topprotein sequence of EsuBft3261_3a-0001 >EsuBft3261_3 ID=EsuBft3261_3|Name=EsuBft3261_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=112bp
MAKEAAAKGSAASVDVRPSETPKDLKKRVRGLDKSLTSVHERLVQTEKQI
FDLERSYLEETRLYGNVLQGWDAYLDTKGKGVAAGGKGEAAAGGRGGVNM
REVASEDGEEGM back to topmRNA from alignment at Scaffold_103:27624..28041+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft3261_3a-0001 ID=EsuBft3261_3a-0001|Name=EsuBft3261_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=418bp|location=Sequence derived from alignment at Scaffold_103:27624..28041+ (Ectocarpus subulatus male Bft15b)
TGCTCCTGTTACTCACTGTCATCACTGGCACCACACTAGTCGTGGGCCTC
GATCGGCCCTAAGGGACGCAGCAGAATAAATGGCAAAAGAGGCGGCGGCA
AAGGGCTCTGCAGCCTCGGTGGACGTCCGACCCTCGGAGACGCCCAAGGA
CCTGAAGAAGAGGGTAAGGGGTCTGGACAAGTCGCTCACCAGCGTGCACG
AGCGCTTGGTGCAGACCGAGAAGCAGATCTTCGACCTAGAGCGTAGCTAT
CTCGAGGAGACCAGGCTCTACGGAAACGTGCTCCAGGGCTGGGATGCGTA
CCTCGACACCAAGGGGAAGGGAGTAGCAGCAGGCGGGAAGGGCGAGGCGG
CGGCTGGGGGACGAGGAGGGGTCAACATGCGAGAGGTAGCTTCTGAAGAC
GGGGAGGAAGGTATGTAG back to topCoding sequence (CDS) from alignment at Scaffold_103:27624..28041+ >EsuBft3261_3a-0001 ID=EsuBft3261_3a-0001|Name=EsuBft3261_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=339bp|location=Sequence derived from alignment at Scaffold_103:27624..28041+ (Ectocarpus subulatus male Bft15b)
ATGGCAAAAGAGGCGGCGGCAAAGGGCTCTGCAGCCTCGGTGGACGTCCG
ACCCTCGGAGACGCCCAAGGACCTGAAGAAGAGGGTAAGGGGTCTGGACA
AGTCGCTCACCAGCGTGCACGAGCGCTTGGTGCAGACCGAGAAGCAGATC
TTCGACCTAGAGCGTAGCTATCTCGAGGAGACCAGGCTCTACGGAAACGT
GCTCCAGGGCTGGGATGCGTACCTCGACACCAAGGGGAAGGGAGTAGCAG
CAGGCGGGAAGGGCGAGGCGGCGGCTGGGGGACGAGGAGGGGTCAACATG
CGAGAGGTAGCTTCTGAAGACGGGGAGGAAGGTATGTAG back to top
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