EsuBft11056_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft11056_2a-0001
Unique NameEsuBft11056_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_1021contigScaffold_1021:8978..10514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FUA0
ProteomeIdEsuBft11056_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsG3DSA
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSSF52058
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsPTHR24420
Ownerapollo_admin@sb-roscoff.fr
Noteprobable inactive leucine-rich repeat receptor-like protein kinase at1g66830 os:arabidopsis tha [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length447
Hectar predicted targeting categoryother localisation
Evalue3.1e-37
EggNOG OGsCOG4886@1|root,2QQYD@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft11056_2aEsuBft11056_2aEctocarpus subulatus male Bft15bgeneScaffold_1021 8978..10514 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft11056_2a-0001-exonagat-exon-96960Ectocarpus subulatus male Bft15bexonScaffold_1021 8978..9009 +
EsuBft11056_2a-0001-exonEsuBft11056_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_1021 9433..9719 +
EsuBft11056_2a-0001-exonagat-exon-96961Ectocarpus subulatus male Bft15bexonScaffold_1021 10387..10514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft11056_2a-0001-cdsEsuBft11056_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_1021 8978..9009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft11056_2a-0001EsuBft11056_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_1021 8978..10514 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft11056_2a-0001 ID=EsuBft11056_2a-0001|Name=EsuBft11056_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=447bp|location=Sequence derived from alignment at Scaffold_1021:8978..10514+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAAGGAATTATGCCCCGCGTTCTTCACGTATCTTCCTTTTTGCCC
TCGCGCAATCCAAAGCAGCCCCTCGGAGCAGGTGTCTTCCATGGATCGTA
TTCCTTTTTTCCGTCGTGCATTCCGACGCAGCCCCTCGGAGCAAATGTCT
TCCATGGATCGTGCCGCACTGATTGCGTTGTTTCATTCGACTGATGGAGC
AAATTGGAAAAGGAAAAGGAACTGGAACACGGACGCGGGGCTGGCTACTT
GGGAGGGGGTCAGACTTAACCACGCGGGCCGTGTGGTGGAGCTGGCCCTG
CCGAACAACAACCTCCACGGGTCCATCCCCGAGGCGCTTGGAGCTCTCAG
CGAGCTGAAGGTGCTTTACTTGCACGACAACAAGCTCACTGGTGAGGCTG
GATGGCGTGCGAAGATTGATTCCTTTCGTGTCTCGCCCACGCGGTAG
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protein sequence of EsuBft11056_2a-0001

>EsuBft11056_2 ID=EsuBft11056_2|Name=EsuBft11056_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=148bp
MSKELCPAFFTYLPFCPRAIQSSPSEQVSSMDRIPFFRRAFRRSPSEQMS
SMDRAALIALFHSTDGANWKRKRNWNTDAGLATWEGVRLNHAGRVVELAL
PNNNLHGSIPEALGALSELKVLYLHDNKLTGEAGWRAKIDSFRVSPTR
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mRNA from alignment at Scaffold_1021:8978..10514+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft11056_2a-0001 ID=EsuBft11056_2a-0001|Name=EsuBft11056_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1537bp|location=Sequence derived from alignment at Scaffold_1021:8978..10514+ (Ectocarpus subulatus male Bft15b)
ATGTCAAAGGAATTATGCCCCGCGTTCTTCACGTTGGTTTGTTTCGTACC
ATCTGTTCTGGGCGCCAGTCCAAGCCATCCAGTATATCCGCCTGAGGACC
AGACGGGCTCACACACAAGGCTGTCTGTATGTTCATCTTTCCTCCTTCGG
TGTCCCTTGACTTCAATTATCACGCGAGAAGGGTTCAGCAGCCCCTCCCG
TATTGTTTGGTGTACTCGCTACTATGCGCTTTTCACTTCTTCGTTGCTGT
ACGTTTGGTCACTCCCGGCAGATTTGGTCCCATGATCTAGAGCCAGAAGG
ATTAACGAGTGTTCCCACTGAACCTCGTCCCCACATAGCCACTGTCATGT
AACCGAGCTTCATACGATTTGGCATCCCGGAAGTCAGGCCACAGGAATTG
AAGCCACTGTGACTCGCGTCTTTTGTTTTGTCCCTTTGTCTCCCTCTCGT
CGCAGGTATCTTCCTTTTTGCCCTCGCGCAATCCAAAGCAGCCCCTCGGA
GCAGGTGTCTTCCATGGATCGTATTCCTTTTTTCCGTCGTGCATTCCGAC
GCAGCCCCTCGGAGCAAATGTCTTCCATGGATCGTGCCGCACTGATTGCG
TTGTTTCATTCGACTGATGGAGCAAATTGGAAAAGGAAAAGGAACTGGAA
CACGGACGCGGGGCTGGCTACTTGGGAGGGGGTCAGACTTAACCACGCGG
GCCGTGTGGTGGAGCTGGCCCTGCCGAACAACAACCTCCACGGTATTGCA
ATGTCTCGTCCGCGTTGTGAATTCGCCCTTGCTATGCCATCTGCTTTGCG
TCAGCATCGAGTTGTCATTGGGTGATCTTCCCTATGTTGATTGATGCGAA
TTGACGCCCTTTGCTCCCGTGTTTAGCTAACATGAGCTTCCACGAGCGTC
CATGACCTTCCAAGCATTACTTTCGGGACGATACCAACCTCACAATTCCC
GAATATATGATGAAGGTAAAACACGGGGTGATTGAGAGCACCGCTTTGTA
GCGCCCTTCATCTGTACCCCTAGAACCGAAACCGATACCCTTTAAGAGAA
TGGCCTCATCTTTTCTGAGCGGGGAAACATTTGTGGCATGAAACATAGCC
TATTCAGTGGTACGACCGTGAGAAGATCGGCGGGTTGTATCGCGAGAGAC
GTTTGGGAGGTCGGGATGCTGGACCTAAGTGTCAGTGCGATTGCTGATCA
ATTTCGTCGCGATCCGAATCGACCTGGACTCTGAGGGAAACAATAATGGG
CGTTGTCTCATGGCTGGCGTTGGGGTCTGTAAAACAGTTTGGCTAGGTTG
TAGAGCACCTCCGTTCAGTACACACAAGGCGTTGGCGACACATCATGTCC
TGCGTTACATGTGCATTTTGACCAGGCAATGCGGCTCATTGTGCTTTTGT
CTCGTGCAGGGTCCATCCCCGAGGCGCTTGGAGCTCTCAGCGAGCTGAAG
GTGCTTTACTTGCACGACAACAAGCTCACTGGTGAGGCTGGATGGCGTGC
GAAGATTGATTCCTTTCGTGTCTCGCCCACGCGGTAG
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Coding sequence (CDS) from alignment at Scaffold_1021:8978..10514+

>EsuBft11056_2a-0001 ID=EsuBft11056_2a-0001|Name=EsuBft11056_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=447bp|location=Sequence derived from alignment at Scaffold_1021:8978..10514+ (Ectocarpus subulatus male Bft15b)
ATGTCAAAGGAATTATGCCCCGCGTTCTTCACGTATCTTCCTTTTTGCCC
TCGCGCAATCCAAAGCAGCCCCTCGGAGCAGGTGTCTTCCATGGATCGTA
TTCCTTTTTTCCGTCGTGCATTCCGACGCAGCCCCTCGGAGCAAATGTCT
TCCATGGATCGTGCCGCACTGATTGCGTTGTTTCATTCGACTGATGGAGC
AAATTGGAAAAGGAAAAGGAACTGGAACACGGACGCGGGGCTGGCTACTT
GGGAGGGGGTCAGACTTAACCACGCGGGCCGTGTGGTGGAGCTGGCCCTG
CCGAACAACAACCTCCACGGGTCCATCCCCGAGGCGCTTGGAGCTCTCAG
CGAGCTGAAGGTGCTTTACTTGCACGACAACAAGCTCACTGGTGAGGCTG
GATGGCGTGCGAAGATTGATTCCTTTCGTGTCTCGCCCACGCGGTAG
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