EsuBft2381_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2381_6a-0001
Unique Name	EsuBft2381_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_189	contig	Scaffold_189:678574..681222 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2381_6
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	252
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2381_6a	EsuBft2381_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_189 678574..681222 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2381_6a-0001	EsuBft2381_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_189 678575..679150 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2381_6a-0001-exon	EsuBft2381_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 678574..679401 +
EsuBft2381_6a-0001-exon	agat-exon-109455	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 679524..681222 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2381_6a-0001-exon	agat-five_prime_utr-6169	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_189 678574..678574 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2381_6a-0001-cds	EsuBft2381_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_189 678575..679150 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2381_6a-0001-exon	agat-three_prime_utr-9621	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_189 679151..679401 +
EsuBft2381_6a-0001-exon	agat-three_prime_utr-9622	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_189 679524..681222 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_189:678574..681222+
coding sequence from alignment at Scaffold_189:678574..681222+

spliced messenger RNA

>EsuBft2381_6a-0001 ID=EsuBft2381_6a-0001|Name=EsuBft2381_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2527bp|location=Sequence derived from alignment at Scaffold_189:678574..681222+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATGGTCGCCACCCAGCCTGTGGTCAAGCCTGAGGCGGCCTCCCTCGCTG
GTGGAGCCGTCTCCACCCCTGCGATCCGAGCAACGACCGCTGGCGCCGGC
GAGAGGTCTTCGGCTACCCCCCGCCCGGCGTCGCCGGTCCCCCTGGCCCC
GCTTTCCACGGCTTCGGCAGCAACTGCGGCTTCAGCTGCCCCGGCTGCTT
CGGCGGCCCCCGCTGCTTCGGCGGCCCCCACTATTTCGGCAGCCCCCGCT
GTTTCGACAGCCCCAGCGGCTCCGGCTGCACCGTGGCGACTCCGGCGTCT
TCGGCGTTCCAGCCCAAGGCCCGCCGCGTCAAGGCCAAGCCGGTCCAGCT
CACCATGCGAGAGAGTAGCTCGGGCGAGGACTCGGGCTGGAGTTCCGCGG
GAGCGCCTCGCCGCTCCCCAGAGCCATCTTCATCGGCGGGCGATGGTGGG
GCACGGCAGCAGGCCAAGCGCCACACGAACGGGACTCGTGGCAGTGGAGG
CGGATCGGGCTCAGGCTCAGACTGGAGTCTCACCCGGAAGCACGGCGCTC
GGAAGGGAGCTTCTTCCAGGCAGGTAGTCCCGTCCCTTATGGATGCGACG
TTGAGTGATCGTTTCCTTTTACATGATGTTTTTTTTTCTCAGGCTTCGGC
CCCCCCCTCAACTTCGGTTGTTGGTACGGTTTCGCCCCCCCCTGTTTCCT
CGGACTCGGGGCTTTTGCGTCGAGTTGAGTTTTCGGACCTTCCCCCGCCT
TTGGCTTCCCCCGTTTCTTCGGAACTCTTTGCACGTTCTGTCCCTTCTGC
CGCATTCAATGCTCTAGACTCCGGACATGGTTGAGTTTTCGAATCCAGCC
CCGGTTTCGACCGCCCCTGTTTCTTTGGAAACCTCTGCACCCCGTAGCCT
TTCTACCGCTCGCCATGTCGTGGATCCACGACTGATGCAGAACCATGGGT
TTTCGAACCTCAACCCCCCTTCGGCGCTTGTACCACCTGTGCCGGGTGTT
TCGCGTAGTATGTTGTCCTCAGAACATGCTTCCACAGCTGCTTCGGTAGC
CGTCGCCCCACCCCCTTCTGTTTCCGATCATCGTGCCTTGCCACTTTCTT
CTAACACGGCACACACTCGTCAAGCATCGATCGATGCGACTGATGCAGCT
GCTCGTAATGCTCATGTAGCTACAGTACAACGAGCGTACATCACCCTCGA
CTTGAAAAAAGTTGAGAATGTCGCTACCATGCCCTTCTCCGCTACTCTGT
TGCCGGGAGACGGCTATCAGCAGCTTATTCGCACAACAAGAACGGCTTTG
TCCGATATTTTGCTGTTGTGTGATGAGCAGAGTGAAGGTTTGACAGACAC
TGATTTTGTGCGTGGATGGGAACTTCCTCTCGAAAAAAAACTCTTGAGTG
CGATCACCCCTGACAGGCCTTCTACCGCCGATCTCGTCCTTGCCATTATT
GATGACTTTCGGCTAATGAAACGGAGCTTGGATGGAGGAGCCCCTGGAGG
ACCAGACGCTTTCCAGATACTGTTGCACCACCTGGCGGAGCAATTTGACG
TCGGAGACAGCCAAGAGTCGTTTTTGCAGCTGCAACATTTTGGTGTAGCA
GATGGTACTCCTTTCGCGGATTATGTTCGGGCTTTTCCGATTGTTGGTTT
CGTCTGTGACTGGCTCTGAGCGTACTTTGGCCCCTAGTGTATCCATGGTT
TTCGAAATAGTGCGAAACTCGGTCGACAAGCAATTTCCGAGTCTGTCTCC
GCTTTTGTACCCGGGTGCTTTGGCCACTGCGGTCACTCCCTTTGAATCAA
TTGCAGTTATGTGGGAGGCGTTCGCGAATCTTCGTTCCACCACATCACGG
TGCACCGCGATACAATCCCTTTGACGGCATTCGTGACGTCTTCCGGGCTT
TTCGAGTGGTTGAAGATGCCTCAAGGCAGTTCGGCTGCCCCTGGGTGGTT
TTGCAAAGTTGTCAATGAAGTCATAAAAAATCTCCGCGGTGTTGCATCGT
ACATGGATAATTTGATCGTCTTTGATGACACCCCTGCTTCTCATGTTGGT
ACCATGCGCGCCCTCTTTGAACGCTTGCGTACGCACAACTTGAAACTCAC
GCATCCGAAAGCTACTGTTGGCGCTACTGAAGCAGACTTCCTCGGACACA
CCATCTCCCCTGACGGCGTTAGGCCTAACGGTGCCAAGGTTTCGGCCCTC
ACCAAATGCCTATGCCCAAGGATGTCAAGCAACTACGTTCCCTTCTCGGT
GGTCTCAGCTACTACCGTAAGTTCCTCCCCAACATGGCTAAACGCGTTCG
ACCTCTGACTACTCTACTCAAGAAGCAGGAGAAGCTTATTTCCACCCCTT
CCATGGAGCAAGCCGTTCGCGTTTTATTAGCTGAGTTGGCCAATCCTCCT
GTTGTGGTTTATCCAGATTGGGATGCCGTTTCAGACGGCTCGCGACCTTT
TCATCTTTACTGTGATGCGAGTCGCTGTGGTTTTGGTGGGACTCTCGAAC
AAGAACAGCCACATGGTTCCATTCGCC

protein sequence of EsuBft2381_6a-0001

>EsuBft2381_6 ID=EsuBft2381_6|Name=EsuBft2381_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=191bp
MVATQPVVKPEAASLAGGAVSTPAIRATTAGAGERSSATPRPASPVPLAP
LSTASAATAASAAPAASAAPAASAAPTISAAPAVSTAPAAPAAPWRLRRL
RRSSPRPAASRPSRSSSPCERVARARTRAGVPRERLAAPQSHLHRRAMVG
HGSRPSATRTGLVAVEADRAQAQTGVSPGSTALGRELLPGR

mRNA from alignment at Scaffold_189:678574..681222+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2381_6a-0001 ID=EsuBft2381_6a-0001|Name=EsuBft2381_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2649bp|location=Sequence derived from alignment at Scaffold_189:678574..681222+ (Ectocarpus subulatus male Bft15b)
CATGGTCGCCACCCAGCCTGTGGTCAAGCCTGAGGCGGCCTCCCTCGCTG
GTGGAGCCGTCTCCACCCCTGCGATCCGAGCAACGACCGCTGGCGCCGGC
GAGAGGTCTTCGGCTACCCCCCGCCCGGCGTCGCCGGTCCCCCTGGCCCC
GCTTTCCACGGCTTCGGCAGCAACTGCGGCTTCAGCTGCCCCGGCTGCTT
CGGCGGCCCCCGCTGCTTCGGCGGCCCCCACTATTTCGGCAGCCCCCGCT
GTTTCGACAGCCCCAGCGGCTCCGGCTGCACCGTGGCGACTCCGGCGTCT
TCGGCGTTCCAGCCCAAGGCCCGCCGCGTCAAGGCCAAGCCGGTCCAGCT
CACCATGCGAGAGAGTAGCTCGGGCGAGGACTCGGGCTGGAGTTCCGCGG
GAGCGCCTCGCCGCTCCCCAGAGCCATCTTCATCGGCGGGCGATGGTGGG
GCACGGCAGCAGGCCAAGCGCCACACGAACGGGACTCGTGGCAGTGGAGG
CGGATCGGGCTCAGGCTCAGACTGGAGTCTCACCCGGAAGCACGGCGCTC
GGAAGGGAGCTTCTTCCAGGCAGGTAGTCCCGTCCCTTATGGATGCGACG
TTGAGTGATCGTTTCCTTTTACATGATGTTTTTTTTTCTCAGGCTTCGGC
CCCCCCCTCAACTTCGGTTGTTGGTACGGTTTCGCCCCCCCCTGTTTCCT
CGGACTCGGGGCTTTTGCGTCGAGTTGAGTTTTCGGACCTTCCCCCGCCT
TTGGCTTCCCCCGTTTCTTCGGAACTCTTTGCACGTTCTGTCCCTTCTGC
CGCATTCAATGCTCTAGACTCCGGACATGTACGACGCGTTGAGTTTTCGG
ACCCTCCCCCGCCTTTAGATTCGCCTGTTTCCTCGGAACCCTTTGCGCCC
TCTGTCCGTTCTGCCGTATTCAATGCTATAGACTCCGGACGTGTACGTAG
GGTTGAGTTTTCGAATCCAGCCCCGGTTTCGACCGCCCCTGTTTCTTTGG
AAACCTCTGCACCCCGTAGCCTTTCTACCGCTCGCCATGTCGTGGATCCA
CGACTGATGCAGAACCATGGGTTTTCGAACCTCAACCCCCCTTCGGCGCT
TGTACCACCTGTGCCGGGTGTTTCGCGTAGTATGTTGTCCTCAGAACATG
CTTCCACAGCTGCTTCGGTAGCCGTCGCCCCACCCCCTTCTGTTTCCGAT
CATCGTGCCTTGCCACTTTCTTCTAACACGGCACACACTCGTCAAGCATC
GATCGATGCGACTGATGCAGCTGCTCGTAATGCTCATGTAGCTACAGTAC
AACGAGCGTACATCACCCTCGACTTGAAAAAAGTTGAGAATGTCGCTACC
ATGCCCTTCTCCGCTACTCTGTTGCCGGGAGACGGCTATCAGCAGCTTAT
TCGCACAACAAGAACGGCTTTGTCCGATATTTTGCTGTTGTGTGATGAGC
AGAGTGAAGGTTTGACAGACACTGATTTTGTGCGTGGATGGGAACTTCCT
CTCGAAAAAAAACTCTTGAGTGCGATCACCCCTGACAGGCCTTCTACCGC
CGATCTCGTCCTTGCCATTATTGATGACTTTCGGCTAATGAAACGGAGCT
TGGATGGAGGAGCCCCTGGAGGACCAGACGCTTTCCAGATACTGTTGCAC
CACCTGGCGGAGCAATTTGACGTCGGAGACAGCCAAGAGTCGTTTTTGCA
GCTGCAACATTTTGGTGTAGCAGATGGTACTCCTTTCGCGGATTATGTTC
GGGCTTTTCCGATTGTTGGTTTCGTCTGTGACTGGCTCTGAGCGTACTTT
GGCCCCTAGTGTATCCATGGTTTTCGAAATAGTGCGAAACTCGGTCGACA
AGCAATTTCCGAGTCTGTCTCCGCTTTTGTACCCGGGTGCTTTGGCCACT
GCGGTCACTCCCTTTGAATCAATTGCAGTTATGTGGGAGGCGTTCGCGAA
TCTTCGTTCCACCACATCACGGTGCACCGCGATACAATCCCTTTGACGGC
ATTCGTGACGTCTTCCGGGCTTTTCGAGTGGTTGAAGATGCCTCAAGGCA
GTTCGGCTGCCCCTGGGTGGTTTTGCAAAGTTGTCAATGAAGTCATAAAA
AATCTCCGCGGTGTTGCATCGTACATGGATAATTTGATCGTCTTTGATGA
CACCCCTGCTTCTCATGTTGGTACCATGCGCGCCCTCTTTGAACGCTTGC
GTACGCACAACTTGAAACTCACGCATCCGAAAGCTACTGTTGGCGCTACT
GAAGCAGACTTCCTCGGACACACCATCTCCCCTGACGGCGTTAGGCCTAA
CGGTGCCAAGGTTTCGGCCCTCACCAAATGCCTATGCCCAAGGATGTCAA
GCAACTACGTTCCCTTCTCGGTGGTCTCAGCTACTACCGTAAGTTCCTCC
CCAACATGGCTAAACGCGTTCGACCTCTGACTACTCTACTCAAGAAGCAG
GAGAAGCTTATTTCCACCCCTTCCATGGAGCAAGCCGTTCGCGTTTTATT
AGCTGAGTTGGCCAATCCTCCTGTTGTGGTTTATCCAGATTGGGATGCCG
TTTCAGACGGCTCGCGACCTTTTCATCTTTACTGTGATGCGAGTCGCTGT
GGTTTTGGTGGGACTCTCGAACAAGAACAGCCACATGGTTCCATTCGCC

Coding sequence (CDS) from alignment at Scaffold_189:678574..681222+

>EsuBft2381_6a-0001 ID=EsuBft2381_6a-0001|Name=EsuBft2381_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=576bp|location=Sequence derived from alignment at Scaffold_189:678574..681222+ (Ectocarpus subulatus male Bft15b)
ATGGTCGCCACCCAGCCTGTGGTCAAGCCTGAGGCGGCCTCCCTCGCTGG
TGGAGCCGTCTCCACCCCTGCGATCCGAGCAACGACCGCTGGCGCCGGCG
AGAGGTCTTCGGCTACCCCCCGCCCGGCGTCGCCGGTCCCCCTGGCCCCG
CTTTCCACGGCTTCGGCAGCAACTGCGGCTTCAGCTGCCCCGGCTGCTTC
GGCGGCCCCCGCTGCTTCGGCGGCCCCCACTATTTCGGCAGCCCCCGCTG
TTTCGACAGCCCCAGCGGCTCCGGCTGCACCGTGGCGACTCCGGCGTCTT
CGGCGTTCCAGCCCAAGGCCCGCCGCGTCAAGGCCAAGCCGGTCCAGCTC
ACCATGCGAGAGAGTAGCTCGGGCGAGGACTCGGGCTGGAGTTCCGCGGG
AGCGCCTCGCCGCTCCCCAGAGCCATCTTCATCGGCGGGCGATGGTGGGG
CACGGCAGCAGGCCAAGCGCCACACGAACGGGACTCGTGGCAGTGGAGGC
GGATCGGGCTCAGGCTCAGACTGGAGTCTCACCCGGAAGCACGGCGCTCG
GAAGGGAGCTTCTTCCAGGCAGGTAG