EsuBft2381_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2381_5a-0001
Unique NameEsuBft2381_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:677447..677984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2381_5
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length53
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2381_5aEsuBft2381_5aEctocarpus subulatus male Bft15bgeneScaffold_189 677447..677984 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2381_5a-0001-exonEsuBft2381_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 677447..677984 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2381_5a-0001-exonagat-five_prime_utr-6168Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_189 677447..677646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2381_5a-0001-cdsEsuBft2381_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 677647..677802 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2381_5a-0001-exonagat-three_prime_utr-9620Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 677803..677984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2381_5a-0001EsuBft2381_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 677647..677802 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2381_5a-0001 ID=EsuBft2381_5a-0001|Name=EsuBft2381_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=538bp|location=Sequence derived from alignment at Scaffold_189:677447..677984+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAAGCTTCGGTTTCCGCCTCTGTCCTTTCGAGTACCCAGCCTTCTGTTTT
TGCAGCCGCTGGTGGTCAGTCCTAAGTTTTCCCGCCGGAACCATGTTGCT
GATTCCACGTTTCCTCTCACCTCCACCGCCGCTGAGCCTTCTGCTGTTGG
GGCAGACATTGACGTTGACAATACTGGCTCTGTAGTGCCACGCTTGCCTC
ATGGCTCTGTCGTTGGCCGCACACTGCATTTCGATTACACCGTGCCGGCC
ATTCCTTTTTCGTCGCGTAGCAGTCGTGCACAAGCCGCCGCTCGTGCCCA
ACGACTTCATGACCGTCATGCACCCGTTTCAGTGGCATCAGTGCCTTTGG
TTTTGACTGCTTCACATGCATCTGTTCCGGTGGTTTCGACTGCCTTTGCG
GTTCCGACCGCTTCCAATGCAACCGTCTCAGTAGTTTCGACTGCCCCCGT
TGCATCTGCTCCTGTCGTTTCGACTACCGTGGCTGCTTCCCTTGGTCTTG
ATGCCCCTGTTTCTATAGTTTCGACTACTTCAACTGAA
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protein sequence of EsuBft2381_5a-0001

>EsuBft2381_5 ID=EsuBft2381_5|Name=EsuBft2381_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MALSLAAHCISITPCRPFLFRRVAVVHKPPLVPNDFMTVMHPFQWHQCLW
F
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mRNA from alignment at Scaffold_189:677447..677984+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2381_5a-0001 ID=EsuBft2381_5a-0001|Name=EsuBft2381_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=538bp|location=Sequence derived from alignment at Scaffold_189:677447..677984+ (Ectocarpus subulatus male Bft15b)
GAAGCTTCGGTTTCCGCCTCTGTCCTTTCGAGTACCCAGCCTTCTGTTTT
TGCAGCCGCTGGTGGTCAGTCCTAAGTTTTCCCGCCGGAACCATGTTGCT
GATTCCACGTTTCCTCTCACCTCCACCGCCGCTGAGCCTTCTGCTGTTGG
GGCAGACATTGACGTTGACAATACTGGCTCTGTAGTGCCACGCTTGCCTC
ATGGCTCTGTCGTTGGCCGCACACTGCATTTCGATTACACCGTGCCGGCC
ATTCCTTTTTCGTCGCGTAGCAGTCGTGCACAAGCCGCCGCTCGTGCCCA
ACGACTTCATGACCGTCATGCACCCGTTTCAGTGGCATCAGTGCCTTTGG
TTTTGACTGCTTCACATGCATCTGTTCCGGTGGTTTCGACTGCCTTTGCG
GTTCCGACCGCTTCCAATGCAACCGTCTCAGTAGTTTCGACTGCCCCCGT
TGCATCTGCTCCTGTCGTTTCGACTACCGTGGCTGCTTCCCTTGGTCTTG
ATGCCCCTGTTTCTATAGTTTCGACTACTTCAACTGAA
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Coding sequence (CDS) from alignment at Scaffold_189:677447..677984+

>EsuBft2381_5a-0001 ID=EsuBft2381_5a-0001|Name=EsuBft2381_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=156bp|location=Sequence derived from alignment at Scaffold_189:677447..677984+ (Ectocarpus subulatus male Bft15b)
ATGGCTCTGTCGTTGGCCGCACACTGCATTTCGATTACACCGTGCCGGCC
ATTCCTTTTTCGTCGCGTAGCAGTCGTGCACAAGCCGCCGCTCGTGCCCA
ACGACTTCATGACCGTCATGCACCCGTTTCAGTGGCATCAGTGCCTTTGG
TTTTGA
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