EsuBft3898_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3898_2a-0001
Unique NameEsuBft3898_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:637302..640096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3898_2
Protein domainsTMhelix
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length240
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3898_2aEsuBft3898_2aEctocarpus subulatus male Bft15bgeneScaffold_189 637302..640096 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3898_2a-0001-exonagat-exon-55765Ectocarpus subulatus male Bft15bexonScaffold_189 637302..638161 -
EsuBft3898_2a-0001-exonagat-exon-55764Ectocarpus subulatus male Bft15bexonScaffold_189 638218..639575 -
EsuBft3898_2a-0001-exonEsuBft3898_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 639915..640096 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3898_2a-0001-cdsEsuBft3898_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 637302..638161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3898_2a-0001EsuBft3898_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 637302..640096 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3898_2a-0001 ID=EsuBft3898_2a-0001|Name=EsuBft3898_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2400bp|location=Sequence derived from alignment at Scaffold_189:637302..640096- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAGAGATCGCGCAACGCAGCAGAGAAGCTTAGAGCTGTGGAAGA
GGAGTCGCGCAACGCAGCAGAGAAGCTCAGAGCTGTGGAGGAGAGGTCGC
GCAAAGCAGCAGAGAAGCTACGAGCTGCCAGGTCGGAGGTGGAGAGGCTG
GTGAAGGCGCTTAGAGCTGTGGAGGCTGCCAAGCGTCTACAGCGCGCGCA
GGAGCAGCTGTTCATGCTCTCCGACGGAAGACGAGTTCCGGTTAAACTCT
TTGGCGACCTGGATGTGATTTTCCATTGCCAAAGAGATGTGCGCGTGACG
CTCACATGTGTTGGTGTTGTGCCGGGGTTGGTGCTCACAGGTGTTGGTGC
TCTGTCTGGTTTGGCGCTCGACCTTCTGTCTTTTTCACGGATACAGGAAA
GGTACGACATCGTCCTGAACTGGCAAGGGGCGAAGACTATGGGTGGGCAG
GTGCAGTTCACCAAAATCGCCCATGGCAACTACATCCAGGCAACCCCCGT
CGATCCACTGCCTACGCCCTCTGCGAGTCCCGCGGAGATGAGGCGGGCTA
GAGCGGCGGCATCGGCGGCGATTTCAGCGGCGACGACGGCGGCGCCCGAT
TGGTCGTGTTTTCCCCGCAGTGGCATCGGGGAGGATGGCAGGAGCGCCCG
CGTTGGCGACTGGAGCGGCGGCATCGGGGGCAGCTCCAGCGGCGACAGCG
GCGACGGCGGCGACGGCGGTGATGTCCGGTGGCAGTGTTTCCCCAGCGCC
GGCGACGGGGGGGGCGGCCGGAGTCCCCGCGGTGGCGGCAGGAGCGGCAG
CATTGGCAGCGGCTCCAGCAGCGACGGCGGCGGCCTCTGGCGGCAGTGTT
CCCCCGCGGCGACGGCGGCGGCGGCGGAGGTGGCCGGAGTCCCCGCGGTG
GCAGCAGGAGCGGCAGCATCGGCAGCAGCTCCAGCGGCGACGGTGGCTAC
CTCTGGCGGTGGTGTTCTCCTCGCGACAGCGGCGGGGGGAATGGCCGGGG
TCCCTGCAGTGGTGGCAGGAGCGGCGGCATCGGTAGCAACTCCAGAGGCG
ACGACGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGGAGCGACGGCGGC
GGGGGGAATGGCCGGGGTCCCTGCAGTGGTGGCAGGAGCGGCGGCATCGG
TAGCAACTCCAGAGGCGACGACGGCGACCTACGGCGGCGGTAGTGTTTCC
CTCGGAGCGACGGCGGCGGGGGGAATGGCCGGGGTCCCTGCAGTGGTGGC
AGGAGCGGCGGCATCGGTAGCAACTCCAGAGGCGACGACGGCGACCTACG
GCGGCGGTAGTGTTTCCCTCGGAGCGACGGCGGCGGGGGGAATGGCCGGG
GTCCCTGCAGTGGTGGCAGGAGCGGCGGCATCGGTAGCAACTCCAGAGGC
GACGACGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGGAGCGACGGCGG
CGGGGGGAATGGCCGGGGTCCCTGCAGTGGTGGCAGGAGCGGCGGCATCG
GTAGCAACTCCAGAGGCGACGGCGGCGACCTACGGCGGCGCCGAAGCAGC
GGCATCGGCGGCGGTTCCAGCGGCGACGGCGGCGGTGCCCGGCGACACTG
TTATCTCCGCGACGGTGGCGGGGAGAACGACCAGAGCGCCCGCGTTGGTA
GTTGGAGCGTCGGCATCTACGGCGGTTCCAGCGGCGATGGCGGCGGCACC
TGACGGTGTTGTTTCTCCCGCTGCAGCGGCGGGGAGAGTGGCTCGAGAGC
CCGCGCAGGTGGCTACAGCGGTAGCATCGGCGGCTCGAGTGGCGACATCG
GTGACGGCAACACCCGCGACCGCGGCTACGGCACCGACCGCTACGATGGC
GACCGCCTATGACGTTTCCCCCACCATATCGGTTGGGGAGGCGGCCAGCA
ACCGAGAAGCGGTGGTCAACGGCATCGACGACGGCAGCGATGATGGCGGT
TGGTGCACAGGTGAAGTTGGTGACTGCTGGGATGACAGCGTCTGTAGCGA
GAGGGGGGCGTCCACGCACCCTTTCGATCCCGGCATCGTGTGTTCAGGGG
TGCGCGACACCAACGATCCCGGGGAGGACGACCTGGTCGGTGGCTCCGGC
AGCAGCAGCGGCAGCGGCAGCAGCGGCACCAGCACCAGCAGCGGCAGCAG
TAGCAATGACAAGGCAGAGGGGATGGATGTGGCCTGGTTTCGGGCACTGC
TGCGCCCCTTCGACCCGGGGAAGCTGTACCGGCTGAAGGCTGGGAGGGTG
GGGCCGGTGATGGGGGTGGACACCCCGTTCGACCGTGGAAAGATGTCGAG
GGGGCAACGGTCTGGGCGCCCGTGTTCGCGACCGGAGCAGCGGCAGGAGG
ACCGTGAAGCGGAGAAGGGAGTTCGGAGGATCGGGCGAGTCCAACGATGA
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protein sequence of EsuBft3898_2a-0001

>EsuBft3898_2 ID=EsuBft3898_2|Name=EsuBft3898_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=799bp
MEERSRNAAEKLRAVEEESRNAAEKLRAVEERSRKAAEKLRAARSEVERL
VKALRAVEAAKRLQRAQEQLFMLSDGRRVPVKLFGDLDVIFHCQRDVRVT
LTCVGVVPGLVLTGVGALSGLALDLLSFSRIQERYDIVLNWQGAKTMGGQ
VQFTKIAHGNYIQATPVDPLPTPSASPAEMRRARAAASAAISAATTAAPD
WSCFPRSGIGEDGRSARVGDWSGGIGGSSSGDSGDGGDGGDVRWQCFPSA
GDGGGGRSPRGGGRSGSIGSGSSSDGGGLWRQCSPAATAAAAEVAGVPAV
AAGAAASAAAPAATVATSGGGVLLATAAGGMAGVPAVVAGAAASVATPEA
TTATYGGGSVSLGATAAGGMAGVPAVVAGAAASVATPEATTATYGGGSVS
LGATAAGGMAGVPAVVAGAAASVATPEATTATYGGGSVSLGATAAGGMAG
VPAVVAGAAASVATPEATTATYGGGSVSLGATAAGGMAGVPAVVAGAAAS
VATPEATAATYGGAEAAASAAVPAATAAVPGDTVISATVAGRTTRAPALV
VGASASTAVPAAMAAAPDGVVSPAAAAGRVAREPAQVATAVASAARVATS
VTATPATAATAPTATMATAYDVSPTISVGEAASNREAVVNGIDDGSDDGG
WCTGEVGDCWDDSVCSERGASTHPFDPGIVCSGVRDTNDPGEDDLVGGSG
SSSGSGSSGTSTSSGSSSNDKAEGMDVAWFRALLRPFDPGKLYRLKAGRV
GPVMGVDTPFDRGKMSRGQRSGRPCSRPEQRQEDREAEKGVRRIGRVQR
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mRNA from alignment at Scaffold_189:637302..640096-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3898_2a-0001 ID=EsuBft3898_2a-0001|Name=EsuBft3898_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2795bp|location=Sequence derived from alignment at Scaffold_189:637302..640096- (Ectocarpus subulatus male Bft15b)
ATGGAGGAGAGATCGCGCAACGCAGCAGAGAAGCTTAGAGCTGTGGAAGA
GGAGTCGCGCAACGCAGCAGAGAAGCTCAGAGCTGTGGAGGAGAGGTCGC
GCAAAGCAGCAGAGAAGCTACGAGCTGCCAGGTCGGAGGTGGAGAGGCTG
GTGAAGGCGCTTAGAGCTGTGGAGGCTGCCAAGTATGAGGCGGAGAGGCT
CAGGCAGCAGCAACCACAACAACAGCAGCGCTGCAACGCCCAATGCCAGC
TGCGTGTTGCCCAGTATCCGCAGCACCAAACACAACGTCAACAGCAGGCA
TCTAGTGCCCAACCCCAGTCGCGACCGCAGTTGCAGCAGTGGTCTCGTAG
TGGTGCTATTTGTCAGACTTACCAACAGCCGCAGCAGCAGATGCAACAGC
AGCAACAACTTGTGCGTACGATGCCCGCCCTTTTCCCGAATCGCCCGGGT
GCTACGGTTTTCCTGGGACACACCAGTGCCAAGATCCACGTGGTCCGCTC
GGAGGAGAAGGTGTACAACAGGCGTCTACAGCGCGCGCAGGAGCAGCTGT
TCATGCTCTCCGACGGAAGACGAGTTCCGGTTAAACTCTTTGGCGACCTG
GATGTGATTTTCCATTGCCAAAGAGATGTGCGCGTGACGCTCACATGTGT
TGGTGTTGTGCCGGGGTTGGTGCTCACAGGTGTTGGTGCTCTGTCTGGTT
TGGCGCTCGACCTTCTGTCTTTTTCACGGATACAGGAAAGGTACGACATC
GTCCTGAACTGGCAAGGGGCGAAGACTATGGGTGGGCAGGTGCAGTTCAC
CAAAATCGCCCATGGCAACTACATCCAGGCAACCCCCGTCGATCCACTGC
CTACGCCCTCTGCGAGTCCCGCGGAGATGAGGCGGGCTAGAGCGGCGGCA
TCGGCGGCGATTTCAGCGGCGACGACGGCGGCGCCCGATTGGTCGTGTTT
TCCCCGCAGTGGCATCGGGGAGGATGGCAGGAGCGCCCGCGTTGGCGACT
GGAGCGGCGGCATCGGGGGCAGCTCCAGCGGCGACAGCGGCGACGGCGGC
GACGGCGGTGATGTCCGGTGGCAGTGTTTCCCCAGCGCCGGCGACGGGGG
GGGCGGCCGGAGTCCCCGCGGTGGCGGCAGGAGCGGCAGCATTGGCAGCG
GCTCCAGCAGCGACGGCGGCGGCCTCTGGCGGCAGTGTTCCCCCGCGGCG
ACGGCGGCGGCGGCGGAGGTGGCCGGAGTCCCCGCGGTGGCAGCAGGAGC
GGCAGCATCGGCAGCAGCTCCAGCGGCGACGGTGGCTACCTCTGGCGGTG
GTGTTCTCCTCGCGACAGCGGCGGGGGGAATGGCCGGGGTCCCTGCAGTG
GTGGCAGGAGCGGCGGCATCGGTAGCAACTCCAGAGGCGACGACGGCGAC
CTACGGCGGCGGTAGTGTTTCCCTCGGAGCGACGGCGGCGGGGGGAATGG
CCGGGGTCCCTGCAGTGGTGGCAGGAGCGGCGGCATCGGTAGCAACTCCA
GAGGCGACGACGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGGAGCGAC
GGCGGCGGGGGGAATGGCCGGGGTCCCTGCAGTGGTGGCAGGAGCGGCGG
CATCGGTAGCAACTCCAGAGGCGACGACGGCGACCTACGGCGGCGGTAGT
GTTTCCCTCGGAGCGACGGCGGCGGGGGGAATGGCCGGGGTCCCTGCAGT
GGTGGCAGGAGCGGCGGCATCGGTAGCAACTCCAGAGGCGACGACGGCGA
CCTACGGCGGCGGTAGTGTTTCCCTCGGAGCGACGGCGGCGGGGGGAATG
GCCGGGGTCCCTGCAGTGGTGGCAGGAGCGGCGGCATCGGTAGCAACTCC
AGAGGCGACGGCGGCGACCTACGGCGGCGGTAGCGTTACCCTCGCTGCGA
CGGCGGGGGATGCGCCCAGAGGGCCGCGACGGCAGCCGAAGCAGCGGCAT
CGGCGGCGGTTCCAGCGGCGACGGCGGCGGTGCCCGGCGACACTGTTATC
TCCGCGACGGTGGCGGGGAGAACGACCAGAGCGCCCGCGTTGGTAGTTGG
AGCGTCGGCATCTACGGCGGTTCCAGCGGCGATGGCGGCGGCACCTGACG
GTGTTGTTTCTCCCGCTGCAGCGGCGGGGAGAGTGGCTCGAGAGCCCGCG
CAGGTGGCTACAGCGGTAGCATCGGCGGCTCGAGTGGCGACATCGGTGAC
GGCAACACCCGCGACCGCGGCTACGGCACCGACCGCTACGATGGCGACCG
CCTATGACGTTTCCCCCACCATATCGGTTGGGGAGGCGGCCAGCAACCGA
GAAGCGGTGGTCAACGGCATCGACGACGGCAGCGATGATGGCGGTTGGTG
CACAGGTGAAGTTGGTGACTGCTGGGATGACAGCGTCTGTAGCGAGAGGG
GGGCGTCCACGCACCCTTTCGATCCCGGCATCGTGTGTTCAGGGGTGCGC
GACACCAACGATCCCGGGGAGGACGACCTGGTCGGTGGCTCCGGCAGCAG
CAGCGGCAGCGGCAGCAGCGGCACCAGCACCAGCAGCGGCAGCAGTAGCA
ATGACAAGGCAGAGGGGATGGATGTGGCCTGGTTTCGGGCACTGCTGCGC
CCCTTCGACCCGGGGAAGCTGTACCGGCTGAAGGCTGGGAGGGTGGGGCC
GGTGATGGGGGTGGACACCCCGTTCGACCGTGGAAAGATGTCGAGGGGGC
AACGGTCTGGGCGCCCGTGTTCGCGACCGGAGCAGCGGCAGGAGGACCGT
GAAGCGGAGAAGGGAGTTCGGAGGATCGGGCGAGTCCAACGATGA
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Coding sequence (CDS) from alignment at Scaffold_189:637302..640096-

>EsuBft3898_2a-0001 ID=EsuBft3898_2a-0001|Name=EsuBft3898_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2400bp|location=Sequence derived from alignment at Scaffold_189:637302..640096- (Ectocarpus subulatus male Bft15b)
ATGGAGGAGAGATCGCGCAACGCAGCAGAGAAGCTTAGAGCTGTGGAAGA
GGAGTCGCGCAACGCAGCAGAGAAGCTCAGAGCTGTGGAGGAGAGGTCGC
GCAAAGCAGCAGAGAAGCTACGAGCTGCCAGGTCGGAGGTGGAGAGGCTG
GTGAAGGCGCTTAGAGCTGTGGAGGCTGCCAAGCGTCTACAGCGCGCGCA
GGAGCAGCTGTTCATGCTCTCCGACGGAAGACGAGTTCCGGTTAAACTCT
TTGGCGACCTGGATGTGATTTTCCATTGCCAAAGAGATGTGCGCGTGACG
CTCACATGTGTTGGTGTTGTGCCGGGGTTGGTGCTCACAGGTGTTGGTGC
TCTGTCTGGTTTGGCGCTCGACCTTCTGTCTTTTTCACGGATACAGGAAA
GGTACGACATCGTCCTGAACTGGCAAGGGGCGAAGACTATGGGTGGGCAG
GTGCAGTTCACCAAAATCGCCCATGGCAACTACATCCAGGCAACCCCCGT
CGATCCACTGCCTACGCCCTCTGCGAGTCCCGCGGAGATGAGGCGGGCTA
GAGCGGCGGCATCGGCGGCGATTTCAGCGGCGACGACGGCGGCGCCCGAT
TGGTCGTGTTTTCCCCGCAGTGGCATCGGGGAGGATGGCAGGAGCGCCCG
CGTTGGCGACTGGAGCGGCGGCATCGGGGGCAGCTCCAGCGGCGACAGCG
GCGACGGCGGCGACGGCGGTGATGTCCGGTGGCAGTGTTTCCCCAGCGCC
GGCGACGGGGGGGGCGGCCGGAGTCCCCGCGGTGGCGGCAGGAGCGGCAG
CATTGGCAGCGGCTCCAGCAGCGACGGCGGCGGCCTCTGGCGGCAGTGTT
CCCCCGCGGCGACGGCGGCGGCGGCGGAGGTGGCCGGAGTCCCCGCGGTG
GCAGCAGGAGCGGCAGCATCGGCAGCAGCTCCAGCGGCGACGGTGGCTAC
CTCTGGCGGTGGTGTTCTCCTCGCGACAGCGGCGGGGGGAATGGCCGGGG
TCCCTGCAGTGGTGGCAGGAGCGGCGGCATCGGTAGCAACTCCAGAGGCG
ACGACGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGGAGCGACGGCGGC
GGGGGGAATGGCCGGGGTCCCTGCAGTGGTGGCAGGAGCGGCGGCATCGG
TAGCAACTCCAGAGGCGACGACGGCGACCTACGGCGGCGGTAGTGTTTCC
CTCGGAGCGACGGCGGCGGGGGGAATGGCCGGGGTCCCTGCAGTGGTGGC
AGGAGCGGCGGCATCGGTAGCAACTCCAGAGGCGACGACGGCGACCTACG
GCGGCGGTAGTGTTTCCCTCGGAGCGACGGCGGCGGGGGGAATGGCCGGG
GTCCCTGCAGTGGTGGCAGGAGCGGCGGCATCGGTAGCAACTCCAGAGGC
GACGACGGCGACCTACGGCGGCGGTAGTGTTTCCCTCGGAGCGACGGCGG
CGGGGGGAATGGCCGGGGTCCCTGCAGTGGTGGCAGGAGCGGCGGCATCG
GTAGCAACTCCAGAGGCGACGGCGGCGACCTACGGCGGCGCCGAAGCAGC
GGCATCGGCGGCGGTTCCAGCGGCGACGGCGGCGGTGCCCGGCGACACTG
TTATCTCCGCGACGGTGGCGGGGAGAACGACCAGAGCGCCCGCGTTGGTA
GTTGGAGCGTCGGCATCTACGGCGGTTCCAGCGGCGATGGCGGCGGCACC
TGACGGTGTTGTTTCTCCCGCTGCAGCGGCGGGGAGAGTGGCTCGAGAGC
CCGCGCAGGTGGCTACAGCGGTAGCATCGGCGGCTCGAGTGGCGACATCG
GTGACGGCAACACCCGCGACCGCGGCTACGGCACCGACCGCTACGATGGC
GACCGCCTATGACGTTTCCCCCACCATATCGGTTGGGGAGGCGGCCAGCA
ACCGAGAAGCGGTGGTCAACGGCATCGACGACGGCAGCGATGATGGCGGT
TGGTGCACAGGTGAAGTTGGTGACTGCTGGGATGACAGCGTCTGTAGCGA
GAGGGGGGCGTCCACGCACCCTTTCGATCCCGGCATCGTGTGTTCAGGGG
TGCGCGACACCAACGATCCCGGGGAGGACGACCTGGTCGGTGGCTCCGGC
AGCAGCAGCGGCAGCGGCAGCAGCGGCACCAGCACCAGCAGCGGCAGCAG
TAGCAATGACAAGGCAGAGGGGATGGATGTGGCCTGGTTTCGGGCACTGC
TGCGCCCCTTCGACCCGGGGAAGCTGTACCGGCTGAAGGCTGGGAGGGTG
GGGCCGGTGATGGGGGTGGACACCCCGTTCGACCGTGGAAAGATGTCGAG
GGGGCAACGGTCTGGGCGCCCGTGTTCGCGACCGGAGCAGCGGCAGGAGG
ACCGTGAAGCGGAGAAGGGAGTTCGGAGGATCGGGCGAGTCCAACGATGA
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