Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1017_2 |
| Protein domains | TMhelix |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 144 |
| Hectar predicted targeting category | signal peptide |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1017_2a-0001 ID=EsuBft1017_2a-0001|Name=EsuBft1017_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1449bp|location=Sequence derived from alignment at Scaffold_189:487597..489216- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCGCGGCCACGCCCACCCCGATGCCCACGGCATGGTCCCGTAGGAA
TCTTCCGCGACTTCCGCTATGGTCGCCGCTCATGCTGATCGGGGTGCTGC
AGCTTGTGGTGTTATCGCTCGTTGCCCACTCTGCCTGTTGCTGCAGCCCC
CCCGCGCCCCTGCTCCTGCGCCAGCTATTTCTCGTGGTCGACTCCGCACC
GCTCCTGCCCATCAGGTCGGCTGGCTGGAGCGCACTCTCAGGGTTGAGCC
GGACAGCGTTGGCCAAGACAGATCCCAACATCAACCAGAGCATCGCTCCG
CCGCACACATGCACCACGTTCCTGCCCCAGTTCCTGCTGCTTCTGCAGCC
AGGCTGACGACTGAACAAAGCGGCAGCCATCACTTCGCGCCAGAGACAAT
TAACAACTGAATTTTCTTGCTGTCGGCGAAAGCGTGAGCTGCCCATGGAC
ACCGTTACCCCTTGCTAGCTGCTCTGGAAGAGAGCTCTATTGCTCCTCCA
CCGGCTTGAGAGAGATTCCCATTTTGCGAAACACTCAGCTCGTTGTTTGA
TTGGACGATTCCAACAGGGTCGCCCTGCCACCGGCGGTGCCACAGCGACC
AGGGCACAGGAACTGGGCGTGCAGACAAGGCAGGCACGGGAGTAGGGCGC
TGCCGGTGCGTATTGTAGGTTGTAGACAACCTATTCTACAGCAGTAGTGC
ACATCCATGTGTCGTATGATTTCCACCCCCTTCGCCGCGTCAACGGTCCT
TCCACGACTCCTCTCAATAGCATGGTTTGTTCGTTTGTTACCGAGGATGC
TGACGGGGGCAGCCAAGTTTGTTGGCTCACCTCCCATACACCTGTAGAAT
ACCATACGTTTTTCCTCGTTTTTTTTCAGGGTACACCTCGGGAATATTCC
CGCCGTTTTTTTCCCGCCGTGGTGGGCGGTCCCGGTACTGGCGGGAATTA
CCGCCACATTCGGGTGGTACCGGGAATAACAAGTGGGTTGTCGTTTTTCC
ATATCTTTTTTTGGGCTGTCCCTTTTTGAGAAAAGGGACAGCCCAAAAAG
AGACAGCGTAACAACACTTTTAGGGCCGTTTTAAACGGACCGACTTTTTT
GTCAAAATTTTCAGGGTACACCTCGGTACTAGTTTTTTAGGCGGATCCAG
GCGGGGCGGTACTGCAAAGTGGCGGTATTTTTTTGGCGGTTGGCGGTATT
TCGTTTTCCGGCGGTACCGCCTTTGGCGGTTCCCGGTACCACCCGAATGT
GGCGGTACTTTTTTGGCGGTACTGCAAAGTGGCGGTACTTTTTTGGCGGT
TCCCGGTACTTCGTTTTTTCGGCGGTATTTTTCTGGCGGTACTGAAATAT
GGCGGTACCGTCTCCGGCGGTTCCCGGTACTGCCAAATATGGCGGTTTTT
TGGTGGCGGTACTGAAGTATGGCGGCACCGCCTTCGAGGGTTGCGAGTA back to topprotein sequence of EsuBft1017_2a-0001 >EsuBft1017_2 ID=EsuBft1017_2|Name=EsuBft1017_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=118bp
MAAATPTPMPTAWSRRNLPRLPLWSPLMLIGVLQLVVLSLVAHSACCCSP
PAPLLLRQLFLVVDSAPLLPIRSAGWSALSGLSRTALAKTDPNINQSIAP
PHTCTTFLPQFLLLLQPG back to topmRNA from alignment at Scaffold_189:487597..489216- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1017_2a-0001 ID=EsuBft1017_2a-0001|Name=EsuBft1017_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1620bp|location=Sequence derived from alignment at Scaffold_189:487597..489216- (Ectocarpus subulatus male Bft15b)
ATGGCCGCGGCCACGCCCACCCCGATGCCCACGGCATGGTCCCGTAGGAA
TCTTCCGCGACTTCCGCTATGGTCGCCGCTCATGCTGATCGGGGTGCTGC
AGCTTGTGGTGTTATCGCTCGTTGCCCACTCTGCCTGTTGCTGCAGCCCC
CCCGCGCCCCTGCTCCTGCGCCAGCTATTTCTCGTGGTCGACTCCGCACC
GCTCCTGCCCATCAGGTCGGCTGGCTGGAGCGCACTCTCAGGGTTGAGCC
GGACAGCGTTGGCCAAGACAGATCCCAACATCAACCAGAGCATCGCTCCG
CCGCACACATGCACCACGTTCCTGCCCCAGTTCCTGCTGCTTCTGCAGCC
AGGCTGACGACTGAACAAAGCGGCAGCCATCACTTCGCGCCAGAGACAAT
TAACAACTGAATTTTCTTGCTGTCGGCGAAAGCGTGAGCTGCCCATGGAC
ACCGTTACCCCTTGCTAGCTGCTCTGGAAGAGAGCTCTATTGCTCCTCCA
CCGGCTTGAGAGAGATTCCCATTTTGCGAAACACTCAGCTCGTTGTTTGA
TTGGACGATTCCAACAGGGTCGCCCTGCCACCGGCGGTGCCACAGCGACC
AGGTAGGTCACCAGGTTGAGTTCCCCAGATTCCACATCACTTCCGCCGAC
GAGTTCGCGAGGACCAAGAGGGGGAAGGGGGAGTGTCACACTTATTGGTG
AAGGTTGTCCGATGGCTACTGAAGGTGAGATGTATTGGGCAGTACCTGTT
GAAGTGGGAAGATCAGAGTGCAGGGCACAGGAACTGGGCGTGCAGACAAG
GCAGGCACGGGAGTAGGGCGCTGCCGGTGCGTATTGTAGGTTGTAGACAA
CCTATTCTACAGCAGTAGTGCACATCCATGTGTCGTATGATTTCCACCCC
CTTCGCCGCGTCAACGGTCCTTCCACGACTCCTCTCAATAGCATGGTTTG
TTCGTTTGTTACCGAGGATGCTGACGGGGGCAGCCAAGTTTGTTGGCTCA
CCTCCCATACACCTGTAGAATACCATACGTTTTTCCTCGTTTTTTTTCAG
GGTACACCTCGGGAATATTCCCGCCGTTTTTTTCCCGCCGTGGTGGGCGG
TCCCGGTACTGGCGGGAATTACCGCCACATTCGGGTGGTACCGGGAATAA
CAAGTGGGTTGTCGTTTTTCCATATCTTTTTTTGGGCTGTCCCTTTTTGA
GAAAAGGGACAGCCCAAAAAGAGACAGCGTAACAACACTTTTAGGGCCGT
TTTAAACGGACCGACTTTTTTGTCAAAATTTTCAGGGTACACCTCGGTAC
TAGTTTTTTAGGCGGATCCAGGCGGGGCGGTACTGCAAAGTGGCGGTATT
TTTTTGGCGGTTGGCGGTATTTCGTTTTCCGGCGGTACCGCCTTTGGCGG
TTCCCGGTACCACCCGAATGTGGCGGTACTTTTTTGGCGGTACTGCAAAG
TGGCGGTACTTTTTTGGCGGTTCCCGGTACTTCGTTTTTTCGGCGGTATT
TTTCTGGCGGTACTGAAATATGGCGGTACCGTCTCCGGCGGTTCCCGGTA
CTGCCAAATATGGCGGTTTTTTGGTGGCGGTACTGAAGTATGGCGGCACC
GCCTTCGAGGGTTGCGAGTA back to topCoding sequence (CDS) from alignment at Scaffold_189:487597..489216- >EsuBft1017_2a-0001 ID=EsuBft1017_2a-0001|Name=EsuBft1017_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=357bp|location=Sequence derived from alignment at Scaffold_189:487597..489216- (Ectocarpus subulatus male Bft15b)
ATGGCCGCGGCCACGCCCACCCCGATGCCCACGGCATGGTCCCGTAGGAA
TCTTCCGCGACTTCCGCTATGGTCGCCGCTCATGCTGATCGGGGTGCTGC
AGCTTGTGGTGTTATCGCTCGTTGCCCACTCTGCCTGTTGCTGCAGCCCC
CCCGCGCCCCTGCTCCTGCGCCAGCTATTTCTCGTGGTCGACTCCGCACC
GCTCCTGCCCATCAGGTCGGCTGGCTGGAGCGCACTCTCAGGGTTGAGCC
GGACAGCGTTGGCCAAGACAGATCCCAACATCAACCAGAGCATCGCTCCG
CCGCACACATGCACCACGTTCCTGCCCCAGTTCCTGCTGCTTCTGCAGCC
AGGCTGA back to top
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