EsuBft468_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft468_6a-0001
Unique Name	EsuBft468_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_189	contig	Scaffold_189:367233..369151 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft468_6
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	172
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft468_6a	EsuBft468_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_189 367233..369151 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_6a-0001	EsuBft468_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_189 368880..369092 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_6a-0001-exon	agat-exon-28079	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 367233..367529 -
EsuBft468_6a-0001-exon	EsuBft468_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 367728..369151 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_6a-0001-exon	agat-three_prime_utr-16580	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_189 367233..367529 -
EsuBft468_6a-0001-exon	agat-three_prime_utr-16581	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_189 367728..368879 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_6a-0001-cds	EsuBft468_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_189 368880..369092 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft468_6a-0001-exon	agat-five_prime_utr-10531	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_189 369093..369151 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_189:367233..369151-
coding sequence from alignment at Scaffold_189:367233..369151-

spliced messenger RNA

>EsuBft468_6a-0001 ID=EsuBft468_6a-0001|Name=EsuBft468_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1721bp|location=Sequence derived from alignment at Scaffold_189:367233..369151- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGGACAACTTGTTCGTCGAGAGCGCCTCTGGCCTCACAGAAGAAGAAGTG
CGCAGCGCAATGCGCACTTGGCTTAGTGTAGAGGACGATGAAGAGGTCTT
GAGGGATGAGGTAGAACTCGAGATGGAAGAGGTAACGGAGAACATGTCAA
ACGTACACGTCGAGGAGGACGTGGCCAGTGAAGTGGAAGGCGATCACGGT
AGGCCAGTCGTGCATGCATCAACGATTTCAGAGGGCGAGGTTCGCTCTCG
TCCCGAAGATGTCCGCTCGTAGTTGTACACACATGGAAGAGACGGCGAGC
ACAGCGAAACGGCGTACCTTCTTTCGAAGACTGTGCATTTGTTTACTCAT
GAAACTCAGCTCAAGCGAAGAGCAAAGGGGGGGAGGGAGGTGCAGGCGAC
TTTTCGGGATATGTGGCGGGAGTAGTTTTTTGTTTCGAGAGCAAAGCACT
TTTATTGCCCACGTTCGTTGTTTGCCTTGGGTGAAGTCTCGTGAGGTTGA
ATTTGGCGTTTGTGTTGTGTTGTGCCTCGTTTTGACCTTATGGGAGGCGC
GGTGTCCGCTTTGTCGCGTGCTCTCCCGACATTTTTGGTCTCTGTGTTCC
TGCGTAACCTACATTTTCCTAGTGTCGTTTTACAACCTTCGATATTTCTC
AGGTGCGGTAGCGAGATCTTGGGCAAGATATTCACGGGGAGGACAACGCC
TGAACAATAAAATAAAGCAAATAATTAAGCCCATATCAACACCAGCGCAC
TACCGTCGTGTACATGTACGATGCGTAGGTCGTAGAACACCATCGCTTTC
AGCGTTTTGGTGGTACAGCAGTGCGGGGAAATTCAAACGATGGTATGCAA
GTATGTATTGCAGCACAATAGCAGCAGTGGTTGCGACCTTCAAATCACCT
TGTGTCGTAGGTTTCAAACAACACCTCTTGTGGTCGCCTTTCTGCTGCGA
ATGCGCACCTTTTGACATATGTTTCGCCTTCATCATTGGCCCCGGGGATG
GTGCGTTAGTGGCCCCGGAATTTTAAAGACACACTTTTTTTTGGGAAAAC
GTGGGGTGTCTTTCAAGCGGGGTCCACTTGACACGCATGCAAAAGATCCC
TCAGTTACCTGGATGGATTGTGCGTGCTGCCAGGAGATCCTCTTCGTACC
CAAGCAGCAGCAATTATGACTCTGAGAGTAGCAGCAAGAAGGGCGACAGA
GAGCGTGGACAGCAGTGGGCTGCTGTGGCAGTGGGTGCCAACAGCGGAGT
TCTGGAGTGTGGAGTTGCGCCGCGCACTAAGGGGGTCCGTAGAATCATGC
AATACCGCAAGCGGGGGCAGCTCAAACGGTACTTCACTGCTCCGTTCAAC
ACCACAGGGGGTGAGTGTGGATAGCAGCGCCTTCCGAGGACATAATGTCG
AGTATCCGTGAATCTCAGCCGGCGAGAACTATGTAGTGCTTCCGGAAGGA
ACGAATGAAGAGTAGTATGTGAGGAGGCGTGGTGATACTTTCAAACTCCA
TGTGCAAGTGCAAAGACGTGGGTTGCCGAGTCAAACAAAGGCGATGAGTT
AGAGCCGGTGAAGCAGGTGCGGGAACATCGGATGTTCTTTCCTTCAGGAA
GTGGAGCTGCCAGCAATGCTGACGTCTTCTGTAACCGTGCAACCGCGTCC
AAAAGACCAACTCTCGTTGAAGTTGGATTAAACGCACACTCTTTAGTTGG
AACCCATAATTGCTGGTTGCT

protein sequence of EsuBft468_6a-0001

>EsuBft468_6 ID=EsuBft468_6|Name=EsuBft468_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=70bp
MRTWLSVEDDEEVLRDEVELEMEEVTENMSNVHVEEDVASEVEGDHGRPV
VHASTISEGEVRSRPEDVRS

mRNA from alignment at Scaffold_189:367233..369151-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft468_6a-0001 ID=EsuBft468_6a-0001|Name=EsuBft468_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1919bp|location=Sequence derived from alignment at Scaffold_189:367233..369151- (Ectocarpus subulatus male Bft15b)
CGGACAACTTGTTCGTCGAGAGCGCCTCTGGCCTCACAGAAGAAGAAGTG
CGCAGCGCAATGCGCACTTGGCTTAGTGTAGAGGACGATGAAGAGGTCTT
GAGGGATGAGGTAGAACTCGAGATGGAAGAGGTAACGGAGAACATGTCAA
ACGTACACGTCGAGGAGGACGTGGCCAGTGAAGTGGAAGGCGATCACGGT
AGGCCAGTCGTGCATGCATCAACGATTTCAGAGGGCGAGGTTCGCTCTCG
TCCCGAAGATGTCCGCTCGTAGTTGTACACACATGGAAGAGACGGCGAGC
ACAGCGAAACGGCGTACCTTCTTTCGAAGACTGTGCATTTGTTTACTCAT
GAAACTCAGCTCAAGCGAAGAGCAAAGGGGGGGAGGGAGGTGCAGGCGAC
TTTTCGGGATATGTGGCGGGAGTAGTTTTTTGTTTCGAGAGCAAAGCACT
TTTATTGCCCACGTTCGTTGTTTGCCTTGGGTGAAGTCTCGTGAGGTTGA
ATTTGGCGTTTGTGTTGTGTTGTGCCTCGTTTTGACCTTATGGGAGGCGC
GGTGTCCGCTTTGTCGCGTGCTCTCCCGACATTTTTGGTCTCTGTGTTCC
TGCGTAACCTACATTTTCCTAGTGTCGTTTTACAACCTTCGATATTTCTC
AGGTGCGGTAGCGAGATCTTGGGCAAGATATTCACGGGGAGGACAACGCC
TGAACAATAAAATAAAGCAAATAATTAAGCCCATATCAACACCAGCGCAC
TACCGTCGTGTACATGTACGATGCGTAGGTCGTAGAACACCATCGCTTTC
AGCGTTTTGGTGGTACAGCAGTGCGGGGAAATTCAAACGATGGTATGCAA
GTATGTATTGCAGCACAATAGCAGCAGTGGTTGCGACCTTCAAATCACCT
TGTGTCGTAGGTTTCAAACAACACCTCTTGTGGTCGCCTTTCTGCTGCGA
ATGCGCACCTTTTGACATATGTTTCGCCTTCATCATTGGCCCCGGGGATG
GTGCGTTAGTGGCCCCGGAATTTTAAAGACACACTTTTTTTTGGGAAAAC
GTGGGGTGTCTTTCAAGCGGGGTCCACTTGACACGCATGCAAAAGATCCC
TCAGTTACCTGGATGGATTGTGCGTGCTGCCAGGAGATCCTCTTCGTACC
CAAGCAGCAGCAATTATGACTCTGAGAGTAGCAGCAAGAAGGGCGACAGA
GAGCGTGGACAGCAGTGGGCTGCTGTGGCAGTGGGTGCCAACAGCGGAGT
TCTGGAGTGTGGAGTTGCGCCGCGCACTAAGGGGGTCCGTAGAATCATGC
AATACCGCAAGCGGGGGCAGCTCAAACGGTACTTCACTGCTCCGTTCAAC
ACCACAGGGGGTGAGTGTGGATAGCAGCGCCTTCCGAGGACATAATGTCG
AGTATCCGTGAATCTCAGCCGGCGGTAAGTTGCCCTCGTTGTCTCGACGG
GGCGATGAACCCCTCTATAGATCGTCGTTCGGGACTAGCAGCAGCGGCAG
AAGCAGCAGCGGCAGCATCAGCAGCAGCAGCAGCGGCGGTGTGAACAAAG
TTTTTCCCGAGGCAACCTCGGTGGCAGCGGGTCGGCTGTTCGAGGGACGT
CTTCAATAAGTTGCGCTTGCAGAGAACTATGTAGTGCTTCCGGAAGGAAC
GAATGAAGAGTAGTATGTGAGGAGGCGTGGTGATACTTTCAAACTCCATG
TGCAAGTGCAAAGACGTGGGTTGCCGAGTCAAACAAAGGCGATGAGTTAG
AGCCGGTGAAGCAGGTGCGGGAACATCGGATGTTCTTTCCTTCAGGAAGT
GGAGCTGCCAGCAATGCTGACGTCTTCTGTAACCGTGCAACCGCGTCCAA
AAGACCAACTCTCGTTGAAGTTGGATTAAACGCACACTCTTTAGTTGGAA
CCCATAATTGCTGGTTGCT

Coding sequence (CDS) from alignment at Scaffold_189:367233..369151-

>EsuBft468_6a-0001 ID=EsuBft468_6a-0001|Name=EsuBft468_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=213bp|location=Sequence derived from alignment at Scaffold_189:367233..369151- (Ectocarpus subulatus male Bft15b)
ATGCGCACTTGGCTTAGTGTAGAGGACGATGAAGAGGTCTTGAGGGATGA
GGTAGAACTCGAGATGGAAGAGGTAACGGAGAACATGTCAAACGTACACG
TCGAGGAGGACGTGGCCAGTGAAGTGGAAGGCGATCACGGTAGGCCAGTC
GTGCATGCATCAACGATTTCAGAGGGCGAGGTTCGCTCTCGTCCCGAAGA
TGTCCGCTCGTAG