EsuBft663_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft663_15a-0001
Unique NameEsuBft663_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:221702..223391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LCF4
ProteomeIdEsuBft663_15
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length140
Hectar predicted targeting categorysignal peptide
Evalue2.33e-177
EggNOG OGs28I6J@1|root,2QQGQ@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_004810.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePHTF1
GOsGO:0003674,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0005801,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0012505,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
Descriptiontranscription, DNA-templated
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft663_15aEsuBft663_15aEctocarpus subulatus male Bft15bgeneScaffold_189 221702..223391 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_15a-0001-exonagat-exon-81079Ectocarpus subulatus male Bft15bexonScaffold_189 221702..222790 -
EsuBft663_15a-0001-exonEsuBft663_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 223077..223391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_15a-0001-cdsEsuBft663_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 221702..222790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_15a-0001EsuBft663_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 221702..223391 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft663_15a-0001 ID=EsuBft663_15a-0001|Name=EsuBft663_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1404bp|location=Sequence derived from alignment at Scaffold_189:221702..223391- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCCACCGTCCTGTTTCCAACGGCCGCGTTGTCCATCCCTTTTCT
GCCTGCACCTCCTGCGCGTATCTCTGGCCGGGCCGTGGCCGGTCTTTCCG
TTGCGGGACAAAAACAACCACAACGGCAACAAATATCGCAGATCCCTCGG
CTGCAGTTTTTCCTGGGATGCACCCTCTACGTGCTGCACAACGCGTGCGC
GTGGCTCTACGTCCGGGGCTGCCTACCGCCGGCGCAGTGGACGCTGCAGC
AGCAGCAGCAGCCATCCTGGGGAGGGCTCGGCGCAGAAGGAGGCAACCAC
GTCATGCACGTTGAGATCCTGCTGCCGTACGTGATCGGATTCCTGTTCGG
CATCGGCTACGGCTCCGTCGTGGCCGCCGGGGGCTGGGAAGCACTGCGCG
AGCCCGCCGACCCGGGCGGCGCCGCCGGGGCCACCGGCGGTGGCGGTGGC
GGTGGCAGTGGCAGTGGCAGTGGCAGTGGCAGTGGCGGTGAAGCCCCCGG
CAGCGGTAGCGGCGGCGGCGGAGAGGCGACGAACATTTCGTTCGCGGCGC
AGGTTTGCGCCTGGGACAGCCGCGCGGAGGAAGAGGCGCAGGCCGCCGGC
GACGGCGAGGAGGACGATGACGACGACTTCGATTCGTCGTCGGGACCCGG
CAGCGACAACGACGACTCGGGCGACGCGGGGGATAACCACCCCGGCGGTG
GTGGTGAAAGAAGAGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCTTCG
CCTTCGAAGGAGGGGGCGGGTACCACGGCGCGCGGCGGGCGGGTGACACG
CTCTCGGGCTCACAACATCGGATTCAAAGAAGTCGCCGACAGTGGCGGCG
GTGAGAACACCGCAGGAGGAGGCGGTGCTAGCGGCAGCGCCCCCGCCGCG
CTTGACCCCGTCGGAGACCCCGCTCGAACGTCGAGACCGGTGACGTGCGA
CAAGCCCGGGCGTTCCACCGAAGGCTCCGGCGGCACCGCCACGACCTCGT
CTTCCGGAGGGGGGGAGGGTGGCGGTAGCGGCAGCGGCGGCGGCGGGAGC
GGGGTCGGTGGGAGCGGGGAGCCTCTCCGGCGGCTGAGTCTGGTCCACCA
GCCGACGCGATTCGACGGCACGGAGGCGGAGGACGACGAGGACGACGAGG
AGGACGGCTACGGCTGGGGGCAGCAGGTGGTGGTGAAGCCGGTGAAGGTG
TCGCTGTGGGACAAGCGTGGGCTGAGGTCGAAGGCGCTGCTGTCCCTCAA
CCAGCTCCGCGCGTGCATCATCGAGCGCGCCGAGAGCACTCCGCAGAAGG
CCACCTACCACCGCGCGGCGAAGCTGGTGAGAGACTTCGAGAAGGAAGAG
AAGCTGTTTGTATTTTCTGAAGCAGTAGCGACGGCAACTTTGTCCTGTCG
ATGA
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protein sequence of EsuBft663_15a-0001

>EsuBft663_15 ID=EsuBft663_15|Name=EsuBft663_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=467bp
MMATVLFPTAALSIPFLPAPPARISGRAVAGLSVAGQKQPQRQQISQIPR
LQFFLGCTLYVLHNACAWLYVRGCLPPAQWTLQQQQQPSWGGLGAEGGNH
VMHVEILLPYVIGFLFGIGYGSVVAAGGWEALREPADPGGAAGATGGGGG
GGSGSGSGSGSGGEAPGSGSGGGGEATNISFAAQVCAWDSRAEEEAQAAG
DGEEDDDDDFDSSSGPGSDNDDSGDAGDNHPGGGGERRAAAAAAAAAAAS
PSKEGAGTTARGGRVTRSRAHNIGFKEVADSGGGENTAGGGGASGSAPAA
LDPVGDPARTSRPVTCDKPGRSTEGSGGTATTSSSGGGEGGGSGSGGGGS
GVGGSGEPLRRLSLVHQPTRFDGTEAEDDEDDEEDGYGWGQQVVVKPVKV
SLWDKRGLRSKALLSLNQLRACIIERAESTPQKATYHRAAKLVRDFEKEE
KLFVFSEAVATATLSCR
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mRNA from alignment at Scaffold_189:221702..223391-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft663_15a-0001 ID=EsuBft663_15a-0001|Name=EsuBft663_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1690bp|location=Sequence derived from alignment at Scaffold_189:221702..223391- (Ectocarpus subulatus male Bft15b)
ATGATGGCCACCGTCCTGTTTCCAACGGCCGCGTTGTCCATCCCTTTTCT
GCCTGCACCTCCTGCGCGTATCTCTGGCCGGGCCGTGGCCGGTCTTTCCG
TTGCGGGACAAAAACAACCACAACGGCAACAAATATCGCAGATCCCTCGG
CTGCAGTTTTTCCTGGGATGCACCCTCTACGTGCTGCACAACGCGTGCGC
GTGGCTCTACGTCCGGGGCTGCCTACCGCCGGCGCAGTGGACGCTGCAGC
AGCAGCAGCAGCCATCCTGGGGAGGGCTCGGCGCAGAAGGAGGCAACCAC
GTCATGCACGTTGAGGTAAGCTGGTGCCCGTGCTGCTGTAGTTGTGTTGG
TGTTTTGTTCCTTTTTGTATATATATATCCACAGCAGTCGAGGTGCTTTG
TTTGTTTTGACGGCGATATGCGGAAGGTGCTGTTGCTTTCTCACGTTTTT
ACAAGGAGGGAGCGGACCACACCCTCATCCTTATACAGCAGTAACCCTCG
CCCAAGTCGTATGGTGCGTTGATGGCCTTACGTTGCGCGGTACAAACAAA
ACCTTTGGCTGTGTTTTTTATTTCCATTATTGTCTCGCCTTTTTTTGGCA
GATCCTGCTGCCGTACGTGATCGGATTCCTGTTCGGCATCGGCTACGGCT
CCGTCGTGGCCGCCGGGGGCTGGGAAGCACTGCGCGAGCCCGCCGACCCG
GGCGGCGCCGCCGGGGCCACCGGCGGTGGCGGTGGCGGTGGCAGTGGCAG
TGGCAGTGGCAGTGGCAGTGGCGGTGAAGCCCCCGGCAGCGGTAGCGGCG
GCGGCGGAGAGGCGACGAACATTTCGTTCGCGGCGCAGGTTTGCGCCTGG
GACAGCCGCGCGGAGGAAGAGGCGCAGGCCGCCGGCGACGGCGAGGAGGA
CGATGACGACGACTTCGATTCGTCGTCGGGACCCGGCAGCGACAACGACG
ACTCGGGCGACGCGGGGGATAACCACCCCGGCGGTGGTGGTGAAAGAAGA
GCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCTTCGCCTTCGAAGGAGGG
GGCGGGTACCACGGCGCGCGGCGGGCGGGTGACACGCTCTCGGGCTCACA
ACATCGGATTCAAAGAAGTCGCCGACAGTGGCGGCGGTGAGAACACCGCA
GGAGGAGGCGGTGCTAGCGGCAGCGCCCCCGCCGCGCTTGACCCCGTCGG
AGACCCCGCTCGAACGTCGAGACCGGTGACGTGCGACAAGCCCGGGCGTT
CCACCGAAGGCTCCGGCGGCACCGCCACGACCTCGTCTTCCGGAGGGGGG
GAGGGTGGCGGTAGCGGCAGCGGCGGCGGCGGGAGCGGGGTCGGTGGGAG
CGGGGAGCCTCTCCGGCGGCTGAGTCTGGTCCACCAGCCGACGCGATTCG
ACGGCACGGAGGCGGAGGACGACGAGGACGACGAGGAGGACGGCTACGGC
TGGGGGCAGCAGGTGGTGGTGAAGCCGGTGAAGGTGTCGCTGTGGGACAA
GCGTGGGCTGAGGTCGAAGGCGCTGCTGTCCCTCAACCAGCTCCGCGCGT
GCATCATCGAGCGCGCCGAGAGCACTCCGCAGAAGGCCACCTACCACCGC
GCGGCGAAGCTGGTGAGAGACTTCGAGAAGGAAGAGAAGCTGTTTGTATT
TTCTGAAGCAGTAGCGACGGCAACTTTGTCCTGTCGATGA
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Coding sequence (CDS) from alignment at Scaffold_189:221702..223391-

>EsuBft663_15a-0001 ID=EsuBft663_15a-0001|Name=EsuBft663_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1404bp|location=Sequence derived from alignment at Scaffold_189:221702..223391- (Ectocarpus subulatus male Bft15b)
ATGATGGCCACCGTCCTGTTTCCAACGGCCGCGTTGTCCATCCCTTTTCT
GCCTGCACCTCCTGCGCGTATCTCTGGCCGGGCCGTGGCCGGTCTTTCCG
TTGCGGGACAAAAACAACCACAACGGCAACAAATATCGCAGATCCCTCGG
CTGCAGTTTTTCCTGGGATGCACCCTCTACGTGCTGCACAACGCGTGCGC
GTGGCTCTACGTCCGGGGCTGCCTACCGCCGGCGCAGTGGACGCTGCAGC
AGCAGCAGCAGCCATCCTGGGGAGGGCTCGGCGCAGAAGGAGGCAACCAC
GTCATGCACGTTGAGATCCTGCTGCCGTACGTGATCGGATTCCTGTTCGG
CATCGGCTACGGCTCCGTCGTGGCCGCCGGGGGCTGGGAAGCACTGCGCG
AGCCCGCCGACCCGGGCGGCGCCGCCGGGGCCACCGGCGGTGGCGGTGGC
GGTGGCAGTGGCAGTGGCAGTGGCAGTGGCAGTGGCGGTGAAGCCCCCGG
CAGCGGTAGCGGCGGCGGCGGAGAGGCGACGAACATTTCGTTCGCGGCGC
AGGTTTGCGCCTGGGACAGCCGCGCGGAGGAAGAGGCGCAGGCCGCCGGC
GACGGCGAGGAGGACGATGACGACGACTTCGATTCGTCGTCGGGACCCGG
CAGCGACAACGACGACTCGGGCGACGCGGGGGATAACCACCCCGGCGGTG
GTGGTGAAAGAAGAGCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCTTCG
CCTTCGAAGGAGGGGGCGGGTACCACGGCGCGCGGCGGGCGGGTGACACG
CTCTCGGGCTCACAACATCGGATTCAAAGAAGTCGCCGACAGTGGCGGCG
GTGAGAACACCGCAGGAGGAGGCGGTGCTAGCGGCAGCGCCCCCGCCGCG
CTTGACCCCGTCGGAGACCCCGCTCGAACGTCGAGACCGGTGACGTGCGA
CAAGCCCGGGCGTTCCACCGAAGGCTCCGGCGGCACCGCCACGACCTCGT
CTTCCGGAGGGGGGGAGGGTGGCGGTAGCGGCAGCGGCGGCGGCGGGAGC
GGGGTCGGTGGGAGCGGGGAGCCTCTCCGGCGGCTGAGTCTGGTCCACCA
GCCGACGCGATTCGACGGCACGGAGGCGGAGGACGACGAGGACGACGAGG
AGGACGGCTACGGCTGGGGGCAGCAGGTGGTGGTGAAGCCGGTGAAGGTG
TCGCTGTGGGACAAGCGTGGGCTGAGGTCGAAGGCGCTGCTGTCCCTCAA
CCAGCTCCGCGCGTGCATCATCGAGCGCGCCGAGAGCACTCCGCAGAAGG
CCACCTACCACCGCGCGGCGAAGCTGGTGAGAGACTTCGAGAAGGAAGAG
AAGCTGTTTGTATTTTCTGAAGCAGTAGCGACGGCAACTTTGTCCTGTCG
ATGA
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