EsuBft663_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft663_13a-0001
Unique Name	EsuBft663_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_189	contig	Scaffold_189:202546..204284 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft663_13
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	169
Hectar predicted targeting category	other localisation
Ec32 ortholog description	SANT/Myb domain transcription factor
Ec32 ortholog	Ec-26_004820.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft663_13a	EsuBft663_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_189 202546..204284 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft663_13a-0001-exon	agat-exon-81075	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 202546..204219 +
EsuBft663_13a-0001-exon	EsuBft663_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 204267..204284 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft663_13a-0001-cds	EsuBft663_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_189 202546..204219 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft663_13a-0001	EsuBft663_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_189 202546..204284 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_189:202546..204284+
coding sequence from alignment at Scaffold_189:202546..204284+

spliced messenger RNA

>EsuBft663_13a-0001 ID=EsuBft663_13a-0001|Name=EsuBft663_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1692bp|location=Sequence derived from alignment at Scaffold_189:202546..204284+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACGCAACGTCCGACGGATTAACCGGGAGGTGAACGCCGGCCAGAA
TCCGCCGTTCCGCAAAAGGCGGGGCAAAGACTCGGAGGCAGATACGGCCG
GCGGCACCAAAAAGAGGAAGGCCGCGTCTTTGAAGGAGCTCAAGCGCTTC
TACGACGCGGCCGTCGACGCCGCGAGCGAGGTGTTGTCGACCGCCACCGC
CACCACAAGCGGAAGCGTGCAAGGCACCGGAGGCGCAACGGTCACCGGGA
AGGGGGGAAACATCATTACTACTACCCCTGCCCTTGCCGGGCACCCACTT
CTGCCCGCCGACTCGTCAGCGTCCATGTCAAGCCCCCGGCCCCGTGCCAC
TCGCTCCGATGACGATTGCCGTGGCGATCAGCGTCTCGGATTGCTCGCGG
CGAGTGCCTCTCCCGGCAATCCACCACCGATGGCACCGTTTCCGCCGCGG
CCGTCCCTCTTGCTGACTGGCGAAGGAAGGACTGCTGCTGCTGCCACTGC
TGCTGCTGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGTAGGGACTATTG
TGCAGAATAACACCGATGTCGTCAGTAGAAGCACTGCGTGGACTGCTCCC
GGCGGCGACGCTGCATTCGGCGACGCCTCGGGTCGTTTGGGAGGACGGCA
AGGGCAGCAGGAACGGAACGGCGGTATCCACGCCCATGGCCCCGGTGACG
GCCACCGTTCCTCCGAAGCTCCACCTCCAGACTCCGACGACAACTGCCGG
CGGCGTGGCTCGGCGGTCTCGGCGAGGACCCTGGTCGGAGGCTTCGTCGA
GCAATCCGTCCCGGAGTGCAGCGGAGGCGCTTTCCGGGAGGCCCTCCGCA
AGAAGTTGGAGGCCACCGGAGGCACGCACTGCAAGCTCGGTTCGACCAGA
AGGTTCAAACCCGCCGCCGCCGCCGCCGCCGCCGCTGTGGCAGCTGCGAC
GGTGGCCGACGCCGAGGGCGGCAACAATCGCCTTCGCCGTGCAGCGGGAG
GAGGAAAGAACCGCACCGCCGGCGCCAAAAGAAACGCCAACATAAACGAG
GGCGAGCTCAAGGACGTCGGTGGTTTCGATGTGGGAGACGGAGCCTCCGC
GCCGCGACCGTTCTCGGTTGGCTGCGGGGATGAGGGTCGCCGAAACAAAA
CGGGCTCGAGAAGGAGCTGTTCTGGTAATGAGGAAGGGAGACGACGAGGG
AAGAGAAAGGGATCGTCGTCGTCTTCGCTGCCACCGGCACTGTGGTCTTC
GTCGCCGCCGGCGCAGCCGTCGTCGTCGCCTGCGATAGGTCCATCCCTCT
TCACGCCGGCGCTCCCTCCCCCGGGCGAACGGTTGCCCCCGTCGACAGCC
TATTCCGCGCTGCCCGGGTTCAAGGGCACAACTCCGCGTCACAAGGACCC
GGCCGCAGGCTCAGCCGCCACCGCCGCCGCTGCCACCGCCGCCGCCATTT
CGGGCCTTCCTCTTCCACCCCGCCCGACGACGGCGTGGCACGCAAAGTCT
GCGCTCGTGCCTGGCGTGTCGCCGGTCTTACTCGAAGCGCTCAAAGAGTG
CGAAAAAGACGGAGATTGTGGTCTCCATCAATGCCACGCTGAGGCGGAGC
AGCTGCAGCACACCACCGCCTCCCCTGTGGCAGCGGCACCGTTCTCGGAA
TCGGGCGTCGACCAGCTCAAAACGCGGCGATGGAGGCAATAG

protein sequence of EsuBft663_13a-0001

>EsuBft663_13 ID=EsuBft663_13|Name=EsuBft663_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=563bp
MRRNVRRINREVNAGQNPPFRKRRGKDSEADTAGGTKKRKAASLKELKRF
YDAAVDAASEVLSTATATTSGSVQGTGGATVTGKGGNIITTTPALAGHPL
LPADSSASMSSPRPRATRSDDDCRGDQRLGLLAASASPGNPPPMAPFPPR
PSLLLTGEGRTAAAATAAAAAAAAAAAAAVGTIVQNNTDVVSRSTAWTAP
GGDAAFGDASGRLGGRQGQQERNGGIHAHGPGDGHRSSEAPPPDSDDNCR
RRGSAVSARTLVGGFVEQSVPECSGGAFREALRKKLEATGGTHCKLGSTR
RFKPAAAAAAAAVAAATVADAEGGNNRLRRAAGGGKNRTAGAKRNANINE
GELKDVGGFDVGDGASAPRPFSVGCGDEGRRNKTGSRRSCSGNEEGRRRG
KRKGSSSSSLPPALWSSSPPAQPSSSPAIGPSLFTPALPPPGERLPPSTA
YSALPGFKGTTPRHKDPAAGSAATAAAATAAAISGLPLPPRPTTAWHAKS
ALVPGVSPVLLEALKECEKDGDCGLHQCHAEAEQLQHTTASPVAAAPFSE
SGVDQLKTRRWRQ

mRNA from alignment at Scaffold_189:202546..204284+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft663_13a-0001 ID=EsuBft663_13a-0001|Name=EsuBft663_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1739bp|location=Sequence derived from alignment at Scaffold_189:202546..204284+ (Ectocarpus subulatus male Bft15b)
ATGCGACGCAACGTCCGACGGATTAACCGGGAGGTGAACGCCGGCCAGAA
TCCGCCGTTCCGCAAAAGGCGGGGCAAAGACTCGGAGGCAGATACGGCCG
GCGGCACCAAAAAGAGGAAGGCCGCGTCTTTGAAGGAGCTCAAGCGCTTC
TACGACGCGGCCGTCGACGCCGCGAGCGAGGTGTTGTCGACCGCCACCGC
CACCACAAGCGGAAGCGTGCAAGGCACCGGAGGCGCAACGGTCACCGGGA
AGGGGGGAAACATCATTACTACTACCCCTGCCCTTGCCGGGCACCCACTT
CTGCCCGCCGACTCGTCAGCGTCCATGTCAAGCCCCCGGCCCCGTGCCAC
TCGCTCCGATGACGATTGCCGTGGCGATCAGCGTCTCGGATTGCTCGCGG
CGAGTGCCTCTCCCGGCAATCCACCACCGATGGCACCGTTTCCGCCGCGG
CCGTCCCTCTTGCTGACTGGCGAAGGAAGGACTGCTGCTGCTGCCACTGC
TGCTGCTGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGTAGGGACTATTG
TGCAGAATAACACCGATGTCGTCAGTAGAAGCACTGCGTGGACTGCTCCC
GGCGGCGACGCTGCATTCGGCGACGCCTCGGGTCGTTTGGGAGGACGGCA
AGGGCAGCAGGAACGGAACGGCGGTATCCACGCCCATGGCCCCGGTGACG
GCCACCGTTCCTCCGAAGCTCCACCTCCAGACTCCGACGACAACTGCCGG
CGGCGTGGCTCGGCGGTCTCGGCGAGGACCCTGGTCGGAGGCTTCGTCGA
GCAATCCGTCCCGGAGTGCAGCGGAGGCGCTTTCCGGGAGGCCCTCCGCA
AGAAGTTGGAGGCCACCGGAGGCACGCACTGCAAGCTCGGTTCGACCAGA
AGGTTCAAACCCGCCGCCGCCGCCGCCGCCGCCGCTGTGGCAGCTGCGAC
GGTGGCCGACGCCGAGGGCGGCAACAATCGCCTTCGCCGTGCAGCGGGAG
GAGGAAAGAACCGCACCGCCGGCGCCAAAAGAAACGCCAACATAAACGAG
GGCGAGCTCAAGGACGTCGGTGGTTTCGATGTGGGAGACGGAGCCTCCGC
GCCGCGACCGTTCTCGGTTGGCTGCGGGGATGAGGGTCGCCGAAACAAAA
CGGGCTCGAGAAGGAGCTGTTCTGGTAATGAGGAAGGGAGACGACGAGGG
AAGAGAAAGGGATCGTCGTCGTCTTCGCTGCCACCGGCACTGTGGTCTTC
GTCGCCGCCGGCGCAGCCGTCGTCGTCGCCTGCGATAGGTCCATCCCTCT
TCACGCCGGCGCTCCCTCCCCCGGGCGAACGGTTGCCCCCGTCGACAGCC
TATTCCGCGCTGCCCGGGTTCAAGGGCACAACTCCGCGTCACAAGGACCC
GGCCGCAGGCTCAGCCGCCACCGCCGCCGCTGCCACCGCCGCCGCCATTT
CGGGCCTTCCTCTTCCACCCCGCCCGACGACGGCGTGGCACGCAAAGTCT
GCGCTCGTGCCTGGCGTGTCGCCGGTCTTACTCGAAGCGCTCAAAGAGTG
CGAAAAAGACGGAGATTGTGGTCTCCATCAATGCCACGCTGAGGCGGAGC
AGCTGCAGCACACCACCGCCTCCCCTGTGGCAGCGGCACCGTTCTCGGAA
TCGGGCGTCGACCAGCTCAAAACGGTGCGCTCTCGACAAGTCTTTGCGGC
AGGGGCTGGGGCTGGGAATAGCGGCGATGGAGGCAATAG

Coding sequence (CDS) from alignment at Scaffold_189:202546..204284+

>EsuBft663_13a-0001 ID=EsuBft663_13a-0001|Name=EsuBft663_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1692bp|location=Sequence derived from alignment at Scaffold_189:202546..204284+ (Ectocarpus subulatus male Bft15b)
ATGCGACGCAACGTCCGACGGATTAACCGGGAGGTGAACGCCGGCCAGAA
TCCGCCGTTCCGCAAAAGGCGGGGCAAAGACTCGGAGGCAGATACGGCCG
GCGGCACCAAAAAGAGGAAGGCCGCGTCTTTGAAGGAGCTCAAGCGCTTC
TACGACGCGGCCGTCGACGCCGCGAGCGAGGTGTTGTCGACCGCCACCGC
CACCACAAGCGGAAGCGTGCAAGGCACCGGAGGCGCAACGGTCACCGGGA
AGGGGGGAAACATCATTACTACTACCCCTGCCCTTGCCGGGCACCCACTT
CTGCCCGCCGACTCGTCAGCGTCCATGTCAAGCCCCCGGCCCCGTGCCAC
TCGCTCCGATGACGATTGCCGTGGCGATCAGCGTCTCGGATTGCTCGCGG
CGAGTGCCTCTCCCGGCAATCCACCACCGATGGCACCGTTTCCGCCGCGG
CCGTCCCTCTTGCTGACTGGCGAAGGAAGGACTGCTGCTGCTGCCACTGC
TGCTGCTGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGTAGGGACTATTG
TGCAGAATAACACCGATGTCGTCAGTAGAAGCACTGCGTGGACTGCTCCC
GGCGGCGACGCTGCATTCGGCGACGCCTCGGGTCGTTTGGGAGGACGGCA
AGGGCAGCAGGAACGGAACGGCGGTATCCACGCCCATGGCCCCGGTGACG
GCCACCGTTCCTCCGAAGCTCCACCTCCAGACTCCGACGACAACTGCCGG
CGGCGTGGCTCGGCGGTCTCGGCGAGGACCCTGGTCGGAGGCTTCGTCGA
GCAATCCGTCCCGGAGTGCAGCGGAGGCGCTTTCCGGGAGGCCCTCCGCA
AGAAGTTGGAGGCCACCGGAGGCACGCACTGCAAGCTCGGTTCGACCAGA
AGGTTCAAACCCGCCGCCGCCGCCGCCGCCGCCGCTGTGGCAGCTGCGAC
GGTGGCCGACGCCGAGGGCGGCAACAATCGCCTTCGCCGTGCAGCGGGAG
GAGGAAAGAACCGCACCGCCGGCGCCAAAAGAAACGCCAACATAAACGAG
GGCGAGCTCAAGGACGTCGGTGGTTTCGATGTGGGAGACGGAGCCTCCGC
GCCGCGACCGTTCTCGGTTGGCTGCGGGGATGAGGGTCGCCGAAACAAAA
CGGGCTCGAGAAGGAGCTGTTCTGGTAATGAGGAAGGGAGACGACGAGGG
AAGAGAAAGGGATCGTCGTCGTCTTCGCTGCCACCGGCACTGTGGTCTTC
GTCGCCGCCGGCGCAGCCGTCGTCGTCGCCTGCGATAGGTCCATCCCTCT
TCACGCCGGCGCTCCCTCCCCCGGGCGAACGGTTGCCCCCGTCGACAGCC
TATTCCGCGCTGCCCGGGTTCAAGGGCACAACTCCGCGTCACAAGGACCC
GGCCGCAGGCTCAGCCGCCACCGCCGCCGCTGCCACCGCCGCCGCCATTT
CGGGCCTTCCTCTTCCACCCCGCCCGACGACGGCGTGGCACGCAAAGTCT
GCGCTCGTGCCTGGCGTGTCGCCGGTCTTACTCGAAGCGCTCAAAGAGTG
CGAAAAAGACGGAGATTGTGGTCTCCATCAATGCCACGCTGAGGCGGAGC
AGCTGCAGCACACCACCGCCTCCCCTGTGGCAGCGGCACCGTTCTCGGAA
TCGGGCGTCGACCAGCTCAAAACGCGGCGATGGAGGCAATAG