Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LCF7 |
| ProteomeId | EsuBft663_11 |
| Protein domains | PF05536 |
| Protein domains | IPR008709 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 267 |
| Hectar predicted targeting category | other localisation |
| Evalue | 0.0 |
| EggNOG OGs | 2EY0B@1|root,2SZK0@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Neurochondrin |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft663_11a-0001 ID=EsuBft663_11a-0001|Name=EsuBft663_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2672bp|location=Sequence derived from alignment at Scaffold_189:176357..179635- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTCCAGGTGGAAGATAATCAAACCAGCAGCAGCCGTGATGGGTCCCC
GCCTCTTCATCCAGCAGAAGCCTCGACGCCGCCGCCGCCACCACCACGAG
AGCAGGCCAACAACAACAAGCCGTCCGCGTCGGCAGTCCTCGCCCAGTGC
CTCAAGCTCCTGAAGGGCCAGTCCGATGAGCACAAGTTCGCGGGGCTAGT
GATGGTGACCAAGCACGTCCCGGCTCTCACTGCGTATGAGAGCGTACGAG
CTGACAGCAGCGGTTCTCCTTCCGCTTCCGCCGGTGGCGGCGAACTCCGA
CAGATTTGCAACGCTGTCGGCCCGGCCTTTCTGCACCGATTGCTGAGGAC
CCCAGGAGATAAGAGCAGCGGCGGCGGCAGCGGTGACGATTGTGGTGGTG
GTGCTGTCGGTGGGCTTTCGGTGTACCAGCAGATCGCGCTCGGCGTTCTG
GCGGCCCTCTTCCAGGACGAGAGCCTGGTCCCGAAGTTTGTTCCCACCGC
CCCGGCCCTCGTGCGCGCTCTCCGCGCAGCCGACGCGGCGACGCAGACGC
AGGGGCTCTGCGACGCTCTCTACTGCACCCAGGCCATCGCCGGCGTGCCC
GGCGGCATGGCGCGGTTGCTGAGGGCCGGCGCTGCGCCGGCCGTCGTAAG
CCGCCTCTCGGCTGCAAGCGGAGAACGGGCGGCGAGGGCGAACGAGGAGA
GGGATTTCGGTGGCGACCAAAGCGGTGGTGGTGGTGCCGGCGTGGAAGAA
AGCAAAGCGGGAGGGCCACCGCCCCTACCACCGGGAGAAGATGGGCAAGC
CGCCGCCGACGCGACGAGGTCGGCGGGCTCTCGTTCGTCGGCGTCGGCGG
GGCTTGGAGGCGGGGGCGGAGGCGGCGGCTGCGGCGGCGGCGGCGGCGAC
GATCCAAAGGGCGATGGACGCGGAGGTCCAGCGGGCGGGGACACCCCGGC
GGCGGAGGCGGCGGCGGAGAGGTCGGAGGCCCTAGCGCTCGCCTTCGTTG
GGCGCGCGCTCGAAGCCTCGGGCGGCGGCTGCCTGGGCTCCCGCGAGCTC
ACGGCCATCGCGGAGGCGTTCCGAGACGACCCGACCCCGGCCAAATTTGG
CTTCTTGGACCTCTTGCTGCGGTGGGCGTCTCTACGAGAAGAAGAATCGG
CGCCTTTTCCAGCAGGGGGCGACGGCGGGGTCGGGGCGTGGGCTCGGGAT
GGGCCGTTCCCCGCCGCCCTTCGGGAAGGGCTGCTGCAGGCGCTCCACGG
CGCGGCTGAGGACGACCGCCGGGACTCGGCTCTCGCGCTGCTCGCGTCGC
TGCTTCGCGCCGTGGGACAGGGGTGGGCTGTGGAGGAGGACGGAGAGGAA
CCCGGCAACGGCGAAGGTGGTGGGGGAAGCGCCGTTGTGGGTGAGCAACA
AAGAAGCAGCAACGGGGTGAAGAAGAAGAGAGTAGCGAAGAGAAAACGAG
GGACGTTCGTAGCGTTCGCCGTCAGGTGCGCCGCGGGCGAGGTTCGCATC
CTGCTGGACGAGGCGCTGTCCCTGTTCGTACCGGCAGCGGCGAGAGGGGG
GGCGAGGGCGTCGGATGGGGACGAGGACGCCGGCCCCGGTACCGGGCAGA
AAGCGAGAGGCGCCATGGGTCCGGCGGGGGCAGACCCTTCAATAGGGATC
GCGGCCGAGATAGCCGCTGCGAAAGCTGCTGCTACCGGAAAGGGTGGAGA
GCAGGGGGAAGGACAGCGGCCATCACCAGCACCGCGATGTCCCCTTCCCG
CGTCGCAGCTCAAGGCGATTAAGGAGCAGCGTGCGGCAAGGCTGCTGCGC
ATGGTTCCCGTCGGTCTCGGGGTTGCCGAATCGACCATTGCTTTCCTTTG
TGGAGGGGGGGGTGGGGAGGAGGAGGGGAGCGAGGGAGGCGGAGAAAGCA
GCAATAATCGATGGCAGGAGCTTCCCATCGACACGCTGCAAGACCTGCAG
AAGACTCTGGTGGGCCTCTTCGGTTGCGTGCTGGACTTCTTGTCGGAGAT
CCGACGCTGGGTCCTCGCCGTGTCTCATTCGACCGGCGGTGACGCCGACA
TCGGCTCAGCCTCGGCGGGGCCGTCCATCGTCGACCTGTGGGCTCTGCAC
AGGCTCGGGCTGGAGTGCTCGCGGGTCCTCGGCGTGTGGGTGGCGGAGGA
TCCGGAATCGCTGCCGCAGAGGTTCCTGGAGGCGTTGCCTGTGCTGCTGG
CGCTCAACGCGGGCGAGGAGGCAAGACTGTCTGCAGCTTTTTGTTTTTGC
TTTTTGGTTCGTTGAGGTATGCTGGGTTGTTGGGAGTCAAGAACTGTCGG
AGTCAAGAACACGTCGGCTTTGTCAGCGGTTCGAGCTTGGGAAAACGTCA
GCTGGCAGCTGATCCACACCAACATTTTTTTACTTTCATGTTGCATCACG
CCTTGATGACACTACTACTATGCTTTGACGAGCCCACCACGGAGGCTCGG
CGTGTTATGGTGATCATGTGTAAATGGTGTGGAGTTGACTTGGGGCATGC
GGTTGGCTGGTGTACCGCCTCACCGAGAGCGCACGGGGGCAATGCTGAAG
AAGAGAACGGTTGTAAGCAATGATGATGGTTGTTTTTCGTGCGCTCGTGT
ATGTGTTGACTCGTTGTCCCACGGGTAACCGCGTTCCTGACAGCGCCTAC
CCCCTGTCCCGTTCTTGGCTTG back to topprotein sequence of EsuBft663_11a-0001 >EsuBft663_11 ID=EsuBft663_11|Name=EsuBft663_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=754bp
MVQVEDNQTSSSRDGSPPLHPAEASTPPPPPPREQANNNKPSASAVLAQC
LKLLKGQSDEHKFAGLVMVTKHVPALTAYESVRADSSGSPSASAGGGELR
QICNAVGPAFLHRLLRTPGDKSSGGGSGDDCGGGAVGGLSVYQQIALGVL
AALFQDESLVPKFVPTAPALVRALRAADAATQTQGLCDALYCTQAIAGVP
GGMARLLRAGAAPAVVSRLSAASGERAARANEERDFGGDQSGGGGAGVEE
SKAGGPPPLPPGEDGQAAADATRSAGSRSSASAGLGGGGGGGGCGGGGGD
DPKGDGRGGPAGGDTPAAEAAAERSEALALAFVGRALEASGGGCLGSREL
TAIAEAFRDDPTPAKFGFLDLLLRWASLREEESAPFPAGGDGGVGAWARD
GPFPAALREGLLQALHGAAEDDRRDSALALLASLLRAVGQGWAVEEDGEE
PGNGEGGGGSAVVGEQQRSSNGVKKKRVAKRKRGTFVAFAVRCAAGEVRI
LLDEALSLFVPAAARGGARASDGDEDAGPGTGQKARGAMGPAGADPSIGI
AAEIAAAKAAATGKGGEQGEGQRPSPAPRCPLPASQLKAIKEQRAARLLR
MVPVGLGVAESTIAFLCGGGGGEEEGSEGGGESSNNRWQELPIDTLQDLQ
KTLVGLFGCVLDFLSEIRRWVLAVSHSTGGDADIGSASAGPSIVDLWALH
RLGLECSRVLGVWVAEDPESLPQRFLEALPVLLALNAGEEARLSAAFCFC
FLVR back to topmRNA from alignment at Scaffold_189:176357..179635- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft663_11a-0001 ID=EsuBft663_11a-0001|Name=EsuBft663_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3279bp|location=Sequence derived from alignment at Scaffold_189:176357..179635- (Ectocarpus subulatus male Bft15b)
ATGGTCCAGGTGGAAGATAATCAAACCAGCAGCAGCCGTGATGGGTCCCC
GCCTCTTCATCCAGCAGAAGCCTCGACGCCGCCGCCGCCACCACCACGAG
AGCAGGCCAACAACAACAAGCCGTCCGCGTCGGCAGTCCTCGCCCAGTGC
CTCAAGCTCCTGAAGGGCCAGTCCGATGAGCACAAGTTCGCGGGGCTAGT
GATGGTGACCAAGCACGTCCCGGCTCTCACTGCGTATGAGAGCGTACGAG
CTGACAGCAGCGGTTCTCCTTCCGCTTCCGCCGGTGGCGGCGAACTCCGA
CAGATTTGCAACGCTGTCGGCCCGGCCTTTCTGCACCGATTGCTGAGGAC
CCCAGGAGATAAGAGCAGCGGCGGCGGCAGCGGTGACGATTGTGGTGGTG
GTGCTGTCGGTGGGCTTTCGGTGTACCAGCAGATCGCGCTCGGCGTTCTG
GCGGCCCTCTTCCAGGACGAGAGCCTGGTGAGTCGATGCTCGAGCGCTGA
GTTTTTGTGTGCAGCCCTCTTACGGCCGCTGCAACCGAAAAGCCCACTGC
TGCTGTGCTCATCTCCTACAGATAGACCACAGCCTCAAGTGTTGCATGTC
GTGGTACAGCGGCAGTCTTGCGGCAATGAAGAGGGAGAAGATGGCACTAG
CAACAGGTTGGGGCGAATCTACGTTGTCCCACTAGAATGTGGCGTCACAA
CAAGGACATCGTGCTAACGCCTTGATGATTACAACGCCGCCTTTCGCACC
ACCACCCTTGTTCTGGATTTTCAAGATTTCAAGAATTCAAGATTTCAAAA
TTTCAAAATTCAAAACGTTCGTCTCGTAACCGCCGCCTTCGCTCGCCACC
GCCCCGTGTGCCTCCTCCGCCCCCGCCGACGATAAAAAAACAGGTCCCGA
AGTTTGTTCCCACCGCCCCGGCCCTCGTGCGCGCTCTCCGCGCAGCCGAC
GCGGCGACGCAGACGCAGGGGCTCTGCGACGCTCTCTACTGCACCCAGGC
CATCGCCGGCGTGCCCGGCGGCATGGCGCGGTTGCTGAGGGCCGGCGCTG
CGCCGGCCGTCGTAAGCCGCCTCTCGGCTGCAAGCGGAGAACGGGCGGCG
AGGGCGAACGAGGAGAGGGATTTCGGTGGCGACCAAAGCGGTGGTGGTGG
TGCCGGCGTGGAAGAAAGCAAAGCGGGAGGGCCACCGCCCCTACCACCGG
GAGAAGATGGGCAAGCCGCCGCCGACGCGACGAGGTCGGCGGGCTCTCGT
TCGTCGGCGTCGGCGGGGCTTGGAGGCGGGGGCGGAGGCGGCGGCTGCGG
CGGCGGCGGCGGCGACGATCCAAAGGGCGATGGACGCGGAGGTCCAGCGG
GCGGGGACACCCCGGCGGCGGAGGCGGCGGCGGAGAGGTCGGAGGCCCTA
GCGCTCGCCTTCGTTGGGCGCGCGCTCGAAGCCTCGGGCGGCGGCTGCCT
GGGCTCCCGCGAGCTCACGGCCATCGCGGAGGCGTTCCGAGACGACCCGA
CCCCGGCCAAATTTGGCTTCTTGGACCTCTTGCTGCGGTGGGCGTCTCTA
CGAGAAGAAGAATCGGCGCCTTTTCCAGCAGGGGGCGACGGCGGGGTCGG
GGCGTGGGCTCGGGATGGGCCGTTCCCCGCCGCCCTTCGGGAAGGGCTGC
TGCAGGCGCTCCACGGCGCGGCTGAGGACGACCGCCGGGACTCGGCTCTC
GCGCTGCTCGCGTCGCTGCTTCGCGCCGTGGGACAGGGGTGGGCTGTGGA
GGAGGACGGAGAGGAACCCGGCAACGGCGAAGGTGGTGGGGGAAGCGCCG
TTGTGGGTGAGCAACAAAGAAGCAGCAACGGGGTGAAGAAGAAGAGAGTA
GCGAAGAGAAAACGAGGGACGTTCGTAGCGTTCGCCGTCAGGTGCGCCGC
GGGCGAGGTTCGCATCCTGCTGGACGAGGCGCTGTCCCTGTTCGTACCGG
CAGCGGCGAGAGGGGGGGCGAGGGCGTCGGATGGGGACGAGGACGCCGGC
CCCGGTACCGGGCAGAAAGCGAGAGGCGCCATGGGTCCGGCGGGGGCAGA
CCCTTCAATAGGGATCGCGGCCGAGATAGCCGCTGCGAAAGCTGCTGCTA
CCGGAAAGGGTGGAGAGCAGGGGGAAGGACAGCGGCCATCACCAGCACCG
CGATGTCCCCTTCCCGCGTCGCAGCTCAAGGCGATTAAGGAGCAGCGTGC
GGCAAGGCTGCTGCGCATGGTTCCCGTCGGTCTCGGGGTTGCCGAATCGA
CCATTGCTTTCCTTTGTGGAGGGGGGGGTGGGGAGGAGGAGGGGAGCGAG
GGAGGCGGAGAAAGCAGCAATAATCGATGGCAGGAGCTTCCCATCGACAC
GCTGCAAGACCTGCAGAAGGTGAGCTTCATCAAAGGTCGCCCTCCTGAAG
CGGTAGCGTTCGTTTGTGGTCGTAGCGTTGTTGCTCAAGCACCATCTGCC
CTTACTTCGTATAGCCTGCTCTCCCGCCCGAATTGCTTTCTTTGATCCAG
ATGCCCCCCCTCTCTCCATACTCTGCTGTTTCGAACGCAATCCCCGCTCT
GCACCCCAAGACTCTGGTGGGCCTCTTCGGTTGCGTGCTGGACTTCTTGT
CGGAGATCCGACGCTGGGTCCTCGCCGTGTCTCATTCGACCGGCGGTGAC
GCCGACATCGGCTCAGCCTCGGCGGGGCCGTCCATCGTCGACCTGTGGGC
TCTGCACAGGCTCGGGCTGGAGTGCTCGCGGGTCCTCGGCGTGTGGGTGG
CGGAGGATCCGGAATCGCTGCCGCAGAGGTTCCTGGAGGCGTTGCCTGTG
CTGCTGGCGCTCAACGCGGGCGAGGAGGCAAGACTGTCTGCAGCTTTTTG
TTTTTGCTTTTTGGTTCGTTGAGGTATGCTGGGTTGTTGGGAGTCAAGAA
CTGTCGGAGTCAAGAACACGTCGGCTTTGTCAGCGGTTCGAGCTTGGGAA
AACGTCAGCTGGCAGCTGATCCACACCAACATTTTTTTACTTTCATGTTG
CATCACGCCTTGATGACACTACTACTATGCTTTGACGAGCCCACCACGGA
GGCTCGGCGTGTTATGGTGATCATGTGTAAATGGTGTGGAGTTGACTTGG
GGCATGCGGTTGGCTGGTGTACCGCCTCACCGAGAGCGCACGGGGGCAAT
GCTGAAGAAGAGAACGGTTGTAAGCAATGATGATGGTTGTTTTTCGTGCG
CTCGTGTATGTGTTGACTCGTTGTCCCACGGGTAACCGCGTTCCTGACAG
CGCCTACCCCCTGTCCCGTTCTTGGCTTG back to topCoding sequence (CDS) from alignment at Scaffold_189:176357..179635- >EsuBft663_11a-0001 ID=EsuBft663_11a-0001|Name=EsuBft663_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2265bp|location=Sequence derived from alignment at Scaffold_189:176357..179635- (Ectocarpus subulatus male Bft15b)
ATGGTCCAGGTGGAAGATAATCAAACCAGCAGCAGCCGTGATGGGTCCCC
GCCTCTTCATCCAGCAGAAGCCTCGACGCCGCCGCCGCCACCACCACGAG
AGCAGGCCAACAACAACAAGCCGTCCGCGTCGGCAGTCCTCGCCCAGTGC
CTCAAGCTCCTGAAGGGCCAGTCCGATGAGCACAAGTTCGCGGGGCTAGT
GATGGTGACCAAGCACGTCCCGGCTCTCACTGCGTATGAGAGCGTACGAG
CTGACAGCAGCGGTTCTCCTTCCGCTTCCGCCGGTGGCGGCGAACTCCGA
CAGATTTGCAACGCTGTCGGCCCGGCCTTTCTGCACCGATTGCTGAGGAC
CCCAGGAGATAAGAGCAGCGGCGGCGGCAGCGGTGACGATTGTGGTGGTG
GTGCTGTCGGTGGGCTTTCGGTGTACCAGCAGATCGCGCTCGGCGTTCTG
GCGGCCCTCTTCCAGGACGAGAGCCTGGTCCCGAAGTTTGTTCCCACCGC
CCCGGCCCTCGTGCGCGCTCTCCGCGCAGCCGACGCGGCGACGCAGACGC
AGGGGCTCTGCGACGCTCTCTACTGCACCCAGGCCATCGCCGGCGTGCCC
GGCGGCATGGCGCGGTTGCTGAGGGCCGGCGCTGCGCCGGCCGTCGTAAG
CCGCCTCTCGGCTGCAAGCGGAGAACGGGCGGCGAGGGCGAACGAGGAGA
GGGATTTCGGTGGCGACCAAAGCGGTGGTGGTGGTGCCGGCGTGGAAGAA
AGCAAAGCGGGAGGGCCACCGCCCCTACCACCGGGAGAAGATGGGCAAGC
CGCCGCCGACGCGACGAGGTCGGCGGGCTCTCGTTCGTCGGCGTCGGCGG
GGCTTGGAGGCGGGGGCGGAGGCGGCGGCTGCGGCGGCGGCGGCGGCGAC
GATCCAAAGGGCGATGGACGCGGAGGTCCAGCGGGCGGGGACACCCCGGC
GGCGGAGGCGGCGGCGGAGAGGTCGGAGGCCCTAGCGCTCGCCTTCGTTG
GGCGCGCGCTCGAAGCCTCGGGCGGCGGCTGCCTGGGCTCCCGCGAGCTC
ACGGCCATCGCGGAGGCGTTCCGAGACGACCCGACCCCGGCCAAATTTGG
CTTCTTGGACCTCTTGCTGCGGTGGGCGTCTCTACGAGAAGAAGAATCGG
CGCCTTTTCCAGCAGGGGGCGACGGCGGGGTCGGGGCGTGGGCTCGGGAT
GGGCCGTTCCCCGCCGCCCTTCGGGAAGGGCTGCTGCAGGCGCTCCACGG
CGCGGCTGAGGACGACCGCCGGGACTCGGCTCTCGCGCTGCTCGCGTCGC
TGCTTCGCGCCGTGGGACAGGGGTGGGCTGTGGAGGAGGACGGAGAGGAA
CCCGGCAACGGCGAAGGTGGTGGGGGAAGCGCCGTTGTGGGTGAGCAACA
AAGAAGCAGCAACGGGGTGAAGAAGAAGAGAGTAGCGAAGAGAAAACGAG
GGACGTTCGTAGCGTTCGCCGTCAGGTGCGCCGCGGGCGAGGTTCGCATC
CTGCTGGACGAGGCGCTGTCCCTGTTCGTACCGGCAGCGGCGAGAGGGGG
GGCGAGGGCGTCGGATGGGGACGAGGACGCCGGCCCCGGTACCGGGCAGA
AAGCGAGAGGCGCCATGGGTCCGGCGGGGGCAGACCCTTCAATAGGGATC
GCGGCCGAGATAGCCGCTGCGAAAGCTGCTGCTACCGGAAAGGGTGGAGA
GCAGGGGGAAGGACAGCGGCCATCACCAGCACCGCGATGTCCCCTTCCCG
CGTCGCAGCTCAAGGCGATTAAGGAGCAGCGTGCGGCAAGGCTGCTGCGC
ATGGTTCCCGTCGGTCTCGGGGTTGCCGAATCGACCATTGCTTTCCTTTG
TGGAGGGGGGGGTGGGGAGGAGGAGGGGAGCGAGGGAGGCGGAGAAAGCA
GCAATAATCGATGGCAGGAGCTTCCCATCGACACGCTGCAAGACCTGCAG
AAGACTCTGGTGGGCCTCTTCGGTTGCGTGCTGGACTTCTTGTCGGAGAT
CCGACGCTGGGTCCTCGCCGTGTCTCATTCGACCGGCGGTGACGCCGACA
TCGGCTCAGCCTCGGCGGGGCCGTCCATCGTCGACCTGTGGGCTCTGCAC
AGGCTCGGGCTGGAGTGCTCGCGGGTCCTCGGCGTGTGGGTGGCGGAGGA
TCCGGAATCGCTGCCGCAGAGGTTCCTGGAGGCGTTGCCTGTGCTGCTGG
CGCTCAACGCGGGCGAGGAGGCAAGACTGTCTGCAGCTTTTTGTTTTTGC
TTTTTGGTTCGTTGA back to top
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