EsuBft663_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft663_8a-0001
Unique NameEsuBft663_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:149387..150763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft663_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length87
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft663_8aEsuBft663_8aEctocarpus subulatus male Bft15bgeneScaffold_189 149387..150763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_8a-0001EsuBft663_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 149387..149657 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_8a-0001-exonEsuBft663_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 149387..149435 +
EsuBft663_8a-0001-exonagat-exon-81050Ectocarpus subulatus male Bft15bexonScaffold_189 149611..150022 +
EsuBft663_8a-0001-exonagat-exon-81053Ectocarpus subulatus male Bft15bexonScaffold_189 150117..150146 +
EsuBft663_8a-0001-exonagat-exon-81052Ectocarpus subulatus male Bft15bexonScaffold_189 150341..150567 +
EsuBft663_8a-0001-exonagat-exon-81051Ectocarpus subulatus male Bft15bexonScaffold_189 150608..150763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_8a-0001-cdsEsuBft663_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 149387..149435 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft663_8a-0001-exonagat-three_prime_utr-19925Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 149658..150022 +
EsuBft663_8a-0001-exonagat-three_prime_utr-19926Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 150117..150146 +
EsuBft663_8a-0001-exonagat-three_prime_utr-19927Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 150341..150567 +
EsuBft663_8a-0001-exonagat-three_prime_utr-19928Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 150608..150763 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft663_8a-0001 ID=EsuBft663_8a-0001|Name=EsuBft663_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=874bp|location=Sequence derived from alignment at Scaffold_189:149387..150763+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTTCGGGCGGTGCAAGACGCCGCACCCGACCGTGCAGCACGTGGG
CTACTCGATTCAAGTGCAACGCGTTGAAGTGTCGAAAGTGACCTAATCGA
CATATTTTTCTCAAAGATTCTTGGAAAAACAGCCCAAAAAAATAGTCCAG
CGGGTGCGGTTGGTTGGTGATGCCGAGGCCGGTCCGCAGAGTAGAGCTAC
AGACACTTGATATCAACATTGGGACAGCGTCGTCGTGTTGTTTGTAGAAA
GTATAGACTACATACTGGGTGTGGCGTGTAGCCCCTTCGCTCAACGCGAC
ATACCTGTTTGATGGCACAATGTACCGACAGCAGTAGCGGCTCCTTTGTG
TTCGTGCTGTGAAGAGTATTCTATCATAGAAAATGGGAGATGGTATAATA
CCAGGGGAAATCCAGGACTCTAGCTAGATGCACATACATGCATATAAAAT
CTGTGCAGCGGATTTTGTGAGTCAGATTCTCTCTGGAGTATGAACGACTT
CTTCAGATCGTTTCGGTGGCTACACAGGTGGCCATATCTCGGCGAGTGCA
GAGGTACAAGCTCGCATTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAA
CAAGATCGACCTCGGACCAGTCAACGCCAATGATATGGGGATGGAGTGTA
GACGCATCGTAGAACGCGTTTTCGTTTGAAGTTGGCGTCTTGTTTGAGAG
TAGATGTGACAGATTTACGGTAAGATGTTATCATGAACGGAGATGAAAGG
GCTTTTCCAACACGGAGATGTAGCATGGATCAAAGCATTTGTTGGATTTC
AGCTTTTACAAGCGGACATCAACGCAGTAGTATTTTAGCAAGCTTACGAA
CGCATATAGGATACCATCAGGATT
back to top

protein sequence of EsuBft663_8a-0001

>EsuBft663_8 ID=EsuBft663_8|Name=EsuBft663_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=31bp
MWFGRCKTPHPTVQHVGYSIQVQRVEVSKVT
back to top

mRNA from alignment at Scaffold_189:149387..150763+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft663_8a-0001 ID=EsuBft663_8a-0001|Name=EsuBft663_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1377bp|location=Sequence derived from alignment at Scaffold_189:149387..150763+ (Ectocarpus subulatus male Bft15b)
ATGTGGTTCGGGCGGTGCAAGACGCCGCACCCGACCGTGCAGCACGTGGG
TATGTATCCTCCCAGTCAATGCTCACCGTGCTTGTTGTCTTGTACAATCG
CCAGGACATTCGCTCACTCACTTGAGTGGTGGTAGAAAGCTGACGTGAGA
GGTAACGAGGGGATGGCGGTAGATGGGGACCAGATGGGGGCGGATGGGGG
GGCTTCTACTCAAGTTCAAAACAGGCTACTCGATTCAAGTGCAACGCGTT
GAAGTGTCGAAAGTGACCTAATCGACATATTTTTCTCAAAGATTCTTGGA
AAAACAGCCCAAAAAAATAGTCCAGCGGGTGCGGTTGGTTGGTGATGCCG
AGGCCGGTCCGCAGAGTAGAGCTACAGACACTTGATATCAACATTGGGAC
AGCGTCGTCGTGTTGTTTGTAGAAAGTATAGACTACATACTGGGTGTGGC
GTGTAGCCCCTTCGCTCAACGCGACATACCTGTTTGATGGCACAATGTAC
CGACAGCAGTAGCGGCTCCTTTGTGTTCGTGCTGTGAAGAGTATTCTATC
ATAGAAAATGGGAGATGGTATAATACCAGGGGAAATCCAGGACTCTAGCT
AGATGCACATACATGCATATAAAATCTGTGCAGCGGGTAAGGCAATCAGT
CTGCACTTTGTTTCGCACGAGACCACCGAGAAAATGCGCGCAATATGTAC
GTGCAATATCGCGTACAGTGTGTGTGGCAGATTTTGTGAGTCAGATTCTC
TCTGGAGTATGTACCTAAAAGATGGAATGGCGCCGGTTGGCGGGGAGCAG
CGGTCGGGGAAGTGGCACCGGCGTCCGCTCAAACACCACCAAGAAAAGCT
TTGGCCGCCTTGGAGAGGAGGGTTACGAGTTCATCGATGAATTTGCGACA
CATGCCGTGGGAGGAAGGGACGGAGGAACGATGGTTCTGAAAGGAGTCTT
CAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTACACAGGTGGCCATAT
CTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCGGGCGTCAAGACGCC
GAAAACAGGCGAACAAGATCGACCTCGGACCAGTCAACGCCAATGATATG
GGGATGGAGTGTAGACGCATCGTAGAACGCGTTTTCGTTTGAAGTTGGCG
TCTTGTTTGAGAGTAGATGTGACAGATTTACGTAGAATAGGGTAAGATGA
TAAAAAAAATAAAAAAAATAGGGTAAGATGTTATCATGAACGGAGATGAA
AGGGCTTTTCCAACACGGAGATGTAGCATGGATCAAAGCATTTGTTGGAT
TTCAGCTTTTACAAGCGGACATCAACGCAGTAGTATTTTAGCAAGCTTAC
GAACGCATATAGGATACCATCAGGATT
back to top

Coding sequence (CDS) from alignment at Scaffold_189:149387..150763+

>EsuBft663_8a-0001 ID=EsuBft663_8a-0001|Name=EsuBft663_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=96bp|location=Sequence derived from alignment at Scaffold_189:149387..150763+ (Ectocarpus subulatus male Bft15b)
ATGTGGTTCGGGCGGTGCAAGACGCCGCACCCGACCGTGCAGCACGTGGG
CTACTCGATTCAAGTGCAACGCGTTGAAGTGTCGAAAGTGACCTAA
back to top