EsuBft789_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft789_7a-0001
Unique NameEsuBft789_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_176contigScaffold_176:121790..126687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
SymbolMYB
StatusManually annotated
Seed ortholog2880.D8LQY0
ProteomeIdEsuBft789_7
Protein domainsIPR017930
Protein domainsIPR009057
Protein domainsIPR001005
Protein domainsPTHR10641
Ownerapollo_admin@sb-roscoff.fr
Notetranscriptional activator myb os:gallus gallus gn:myb pe:1 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length414
Hectar predicted targeting categoryother localisation
Evalue6.75e-40
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Date last modified2016-09-07
Date creation2016-06-14
KEGG koko:K09422,ko:K16599
DescriptionMYB-like transcription factor
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
BRITEko00000,ko01000,ko03000,ko04812
NoteAvia K., annotator
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0048566
GO0003682
GO0006816
GO0000082
GO0051571
GO0048872
GO0000122
GO0001077
GO0006338
GO0051574
GO0045944
GO0048538
GO0045624
GO0001701
GO0030183
GO0007596
GO0016363
GO0000978
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft789_7aEsuBft789_7aEctocarpus subulatus male Bft15bgeneScaffold_176 121790..126687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_7a-0001EsuBft789_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_176 121790..126687 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_7a-0001-exonagat-exon-9202Ectocarpus subulatus male Bft15bexonScaffold_176 121790..121800 +
EsuBft789_7a-0001-exonEsuBft789_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_176 121844..121972 +
EsuBft789_7a-0001-exonagat-exon-9201Ectocarpus subulatus male Bft15bexonScaffold_176 124797..124904 +
EsuBft789_7a-0001-exonagat-exon-9203Ectocarpus subulatus male Bft15bexonScaffold_176 126458..126605 +
EsuBft789_7a-0001-exonagat-exon-9200Ectocarpus subulatus male Bft15bexonScaffold_176 126670..126687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_7a-0001-cdsEsuBft789_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_176 121790..121800 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft789_7a-0001 ID=EsuBft789_7a-0001|Name=EsuBft789_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=414bp|location=Sequence derived from alignment at Scaffold_176:121790..126687+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAACATCATGGCACAACCACCTCAACCCGGACGTACGTAAGGATGC
CTGGAAGCCCGAGGAGGACCTGATCATCTTCCAGTACCACCGAAGCCTGG
GGAACCAGTGGGCCGAGATCGCAAAGCTTCTGCCCGGCAGGACCGATAAT
GCCATCAAGAACCGGTACTACTCCACCATGCGAAGGCTCCAGAGGCAGGC
TGTACGGAAAGGGGGACCTGGGGCGATCCCGACGGCCCTCACGGAGAGAC
TCCTAAAGGAGGCGGCGAATCTTCGAAGGCAAGCCGCGATCCAGGAGGGA
GGGGACGCCGGAGCCATCCGGCCGGAGATGGTGGCCGACGCTCAGGCCAA
GGCGGAGGCGGCTGCCGGAGCTCTCGCGGTTGGACGCATGGGCCAGCACA
ATAGTGACTTGTAG
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protein sequence of EsuBft789_7a-0001

>EsuBft789_7 ID=EsuBft789_7|Name=EsuBft789_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=137bp
MTTSWHNHLNPDVRKDAWKPEEDLIIFQYHRSLGNQWAEIAKLLPGRTDN
AIKNRYYSTMRRLQRQAVRKGGPGAIPTALTERLLKEAANLRRQAAIQEG
GDAGAIRPEMVADAQAKAEAAAGALAVGRMGQHNSDL
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mRNA from alignment at Scaffold_176:121790..126687+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft789_7a-0001 ID=EsuBft789_7a-0001|Name=EsuBft789_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4898bp|location=Sequence derived from alignment at Scaffold_176:121790..126687+ (Ectocarpus subulatus male Bft15b)
ATGACAACATCGTAAGTATATTTTGTTCTTCCTTTCTGCTTGTTCCTTTT
GCAGATGGCACAACCACCTCAACCCGGACGTACGTAAGGATGCCTGGAAG
CCCGAGGAGGACCTGATCATCTTCCAGTACCACCGAAGCCTGGGGAACCA
GTGGGCCGAGATCGCAAAGCTTCTGCCCGGCAGGTATGATAGTAAACACA
GCCCCCAGGCACATTGAAGACACCACCCGCCCGCTCACCCTGAGACAGAT
TCAGGGTCATGCCGGGGGCAGGGGGTACTCGTAGCCGCGCATGCCGTAGT
CGTCAAGCCATTGGCCTCGCATCCCTACAAATGCCGGGAGGGGTATGCGG
TCCTAGTTTCAGGGTGTAATTAGTCCAGGAACCTGCCATGGATATACATA
CAATGTATGAACGGATCGGGTTTCAATTTCACTTCATCGAACTGAGGGAG
CTTCCCGTGCTTGATTTTCTGGGAGACGGTGATGACGGTTACTGCTGTCG
GATGCAACGCCTCTTTCTGTGTGTCGCCGGCCGTCGATTCACATCTGTTC
TTTTTGGACTCCCCCCCCCTGCCCCTCTCGGTGGTCGGCCCGGTGTTTGC
CATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTTGTANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCC
CCGGTGTTTGCCATCGAGATTGGGTTTTCGTCACTTGGCAACGACGTTGT
AAAACAAGCCAAGTCACTTCGTGAACTCGGCCACCAGGCTACCGTTTTTT
TTCTTTCCTCTGTTTTTTTTTGGCGGTTACCATAATGGTGGTCGAGTAGA
TCATGTTGTGCGGGGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGGCATGG
GCCTTCGAGAACGTCGACGAAGACAAAGAACGGTAGACGACGAAGACGAC
GAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGT
CGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGC
TGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAATAGA
GAGGAAAGGACGGTAGCTGTAGTGGGGCATAGGAGGTGGGTTGAAAAGGC
GGGAAGGGATATCGTTAGGATAGACAGACTAGGGGAGACATTTTTGAACC
ACCTTTGGCAAAGTAGAAAGGAACGATTGGGCATCGGTGATCGTTCCTGC
GGGAACAATGCTCCGTCCTCTCGAGGACGAGTGGCCAATGGTCTAACAAC
TATGGCATGCAAAACATAAGGGTAACCCCCCCCGCCCTTCCCGGTAAAGA
CCAACGACTAATATTGGCACCTGCGTTCCCCCTACTTTCCCCGTCCGATG
GAACCAGGACCGATAATGCCATCAAGAACCGGTACTACTCCACCATGCGA
AGGCTCCAGAGGCAGGCTGTACGGAAAGGGGGACCTGGGGCGATCCCGAC
GGCCCTCACGGAGAGGTAGGGGCACAGCTGGGGCACAGTTCACCTCCTTC
CTGTGGTTGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGTATGCCGGTCGTGC
GCGTGCTCTGTTGTATTCGGGTGCGTTTGTATCGTCATAGCATCGACCGC
GCCAACTGGCTGGCCGATGATATATGTTAGTCTCAGTGCGGCTGAGAACA
GGAAATGCTTCTACCAGGCATGGTCTGGGACACCGTGAGGTGTGTGTGCG
TGTCTTTTTCATTAACGTCAACCGCGCTATCCGGCTGACCAATGACATGC
CGCTGCTTCTACTGTGGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCG
TCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTC
GTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGT
CGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCG
TCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTC
GTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGT
CGTCGTCGTCGTCGTCGTCGTGGTCTTGGTGGCGATATTAATAGCTGATT
CTTTCCATTGAAAGCGTTCTATTTTTGTTCTCTTTTCCTCGGTTCTTTCA
TTTTTTTCGTTTTTCTCAATACGGTGCCCCCCCCACCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNCCC
CCCCCCCGTCCCTCCCGCTCTCAAACCCCGTTTCCTTCGTTCCAGCGGCG
AGGCTGCCGGGGCCCCGCCCGAACCGGGGGTCGTGGCTGCCGGCCCCGAC
GGAGGCATGCCTCCAGGGATGGGGGGGGATGTTTCCACTCTCGCAGGAGA
CGCCAATGAGGCGGCAAGGCGAGGAATTGCTTGCTGCTGCTGCTGCTGCT
GTTGTTTTTGCGATGGTCGGCGTCGTTGTCGTTGCTGGCTGTTTCTGCTG
TTGTCGGGTGTCGTTGTCACCGTTGCGAGTTTGGCACATCCTGCCCTGCT
ACTGCTGTTTTACAGCACTACTGCTGTTGTACAGCAGTCGCACCCCTCTA
CTTTTTTTATGACATCTTTTTCAGACCGTTCCTTGCTTCCCTGCGTGCTT
GGAGCAAATCCTTGCCGACACAAGAGCAATCTCTTCATCAACGTCCGGTG
TACCCTACCAGACCCCTTACCGATGTTACCCCGGTTATTTTTTGTGTGTA
CGCTGTCCTGTCCTACCTAGTACTGTATCCTGAACCAACCCTGTTTGTAC
GTACCTGCCGTGCTGGGTGCTGGTATATGGTATGTTCGTGTGTACCCTAT
CCTGTCCTACCGATCGTCCCACCCGATCCGACCCCGCTGGTGCGGACTGT
ACCCCTTATCATCCTAGCATACGTTCTGCTCCCTGGTGTGTATGGCATGT
GTGCATACATTTTTTCAGACTCCTAAAGGAGGCGGCGAATCTTCGAAGGC
AAGCCGCGATCCAGGAGGGAGGGGACGCCGGAGCCATCCGGCCGGAGATG
GTGGCCGACGCTCAGGCCAAGGCGGAGGCGGCTGCCGGAGCTCTCGCGGT
TGGACGCATGGGCCAGGTTCGTACACATGGCAGTGGCGGCTACGGTCGAC
AAAAGTTTTTGACGTTATTTTTTATGACAGCACAATAGTGACTTGTAG
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Coding sequence (CDS) from alignment at Scaffold_176:121790..126687+

>EsuBft789_7a-0001 ID=EsuBft789_7a-0001|Name=EsuBft789_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=414bp|location=Sequence derived from alignment at Scaffold_176:121790..126687+ (Ectocarpus subulatus male Bft15b)
ATGACAACATCATGGCACAACCACCTCAACCCGGACGTACGTAAGGATGC
CTGGAAGCCCGAGGAGGACCTGATCATCTTCCAGTACCACCGAAGCCTGG
GGAACCAGTGGGCCGAGATCGCAAAGCTTCTGCCCGGCAGGACCGATAAT
GCCATCAAGAACCGGTACTACTCCACCATGCGAAGGCTCCAGAGGCAGGC
TGTACGGAAAGGGGGACCTGGGGCGATCCCGACGGCCCTCACGGAGAGAC
TCCTAAAGGAGGCGGCGAATCTTCGAAGGCAAGCCGCGATCCAGGAGGGA
GGGGACGCCGGAGCCATCCGGCCGGAGATGGTGGCCGACGCTCAGGCCAA
GGCGGAGGCGGCTGCCGGAGCTCTCGCGGTTGGACGCATGGGCCAGCACA
ATAGTGACTTGTAG
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