EsuBft789_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft789_3a-0001
Unique NameEsuBft789_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_176contigScaffold_176:98339..100755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft789_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length241
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft789_3aEsuBft789_3aEctocarpus subulatus male Bft15bgeneScaffold_176 98339..100755 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_3a-0001-exonEsuBft789_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_176 98339..100755 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_3a-0001-exonagat-three_prime_utr-21500Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_176 98339..100037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_3a-0001-cdsEsuBft789_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_176 100038..100682 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_3a-0001-exonagat-five_prime_utr-13859Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_176 100683..100755 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_3a-0001EsuBft789_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_176 100038..100682 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft789_3a-0001 ID=EsuBft789_3a-0001|Name=EsuBft789_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2417bp|location=Sequence derived from alignment at Scaffold_176:98339..100755- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGCAGCAGTATTCTCCCAGCGGTGGTGGTTTCCCCGCTGCTGTAGCGGG
GAGAACTGGCCGTAAGGCCCGCGATGCCGGCAGGAGCGGCGGTATCGGCG
GCAACTCCAGCAGCAACGGCGGTGGCCTCCGGCGGCAGTGTTCTATCCGC
GGCGGTGGCGGCGACCACGACCGGAGCACCGGCGTTGGCACTTGGAGCGG
CAGCATCGGCGACGGCACCAGCAGTGACGGCGGTGACCCGCGATGGCGTC
GATCACACAATATCGGTTGGGGGGGCAGCCAGTGCACCCACTGAAGCCAT
GGGAGCACCAAGAGCGACAGCGGCGAAAGAGGCCGTCGTCGCTGATGTGA
ATGAGCATTTGCCCAACGTTGTAACGATGACGGGAGGAGGTAGTCAAAGA
CGGCGGCAACGACAGCCAGAGGATAGCTGCAACGACGCAACAGTGGTCGA
CATCGACAACGGCAGCGATTATGGTGGTTGGCATGCCGGCGAGGTTTGTG
ACGGCTGGGATGACAGCGGCTGTGGCGAGAGGGGGGCGTCCACGCACCCT
TTCGATCCCGAACCGTGCTTGCGAGGGTGCGCGGCGCCAGCGATTGCGGG
GAGGACGACCTGGTGGATGGATCCAGCAGCAGCATCGGCAACGACGGAGA
GGGAATGGATGTGGTCTGGTTTCGGGCACTGCTGCGCCCTTCCGGCCGGG
GGAAACGGTGGCTTATGAGGGCTGGGGTACGGGGGTCGGTGCTGGGGGTC
GACACCCCTTTCGACCGTGGAAAGATGTCGCGGGAGCAACGGTCGGGGCG
CTCGTGTTCGCGGCCGAGGCAGTGGCAGGAGGACCATGAGGCGGAGGAGG
GACTATGGAGGATCGGGAGAATTCAACAATGACAACAAGCAGCGCAACTT
CTGCTGGGGTCGTAAACTCGCCCAAGGCACGTGATGTTATCGCGTCCGTG
TTCTTTTCGTTTTGCTTTGATTTGGGGTTGTGCAGTCTGTTGTAATTTGT
GTTGGTCTTCAGATCCCATATAACTGTTGCACTCTTCGCCGTTGTTCGAA
TGGTTGCAAATCAGTTTTCCTATCGTTGCCACTCTTGCAGGTTTGGATTT
GCTTTGGTTTTGTTCTGCGGAGTGTCTACTCGCGTTTTACCTTGCAGTGA
CATTGATTTCCTTGGCCAAATGACGGGAAATTCCATGATAGGTTTTGGAT
AATTTTCTGGGATAGAAATGGAACATTGTGGCGGGGGGGGAGTTGCCAGC
AAACATTTCTCAGACGGCGATGGTAAAACATTTATATCTGGGAAAGGTTT
ATTCCACGCTCAGCTTACCTTCTTTGTTGGGACAGTATTCTCTATGGAAG
CTACCGCTATGCTTTTCTGGTGACACTGGATATGTGTAGGCGTTGTTTTG
CGGGCGACGTGCTACTGTTTTTTAGTCCCTCCGATGTACCGATAACCTTG
CAGTCAATCCTTGCGGACTACCAATATCCTTCCCATCTAGGACAAGTTGT
GCGCTGGCACGAGTTTATTTGTGACTGATGTGCTGGACGTGTGAAATATT
TTCTTTGAAATATGCATATTTTGGTTCCTTGTTTCGGTTGGAAGTTTTAT
CTGATGGATTTGGAATGCAGAGTTGGCATGCTGGACGTCGCGGTGTTCCG
TCGGTTATCATGGGGAGGGGGTGATGTGATAACATGATGCCCGCCGCAGT
ACCACAAGCAATGGTGCGTTGTGTGTCAGTTGAAGTTTTGGATTAATTCC
CGCGTTCACGGGCGAAGTTGATACGGAATCGAATGTTTTTTGGGACTTTC
TTATCGGGTTTTGGTAGTTGACGTTTCGATGATTTTCCGCGTTTTACAAG
GAGGGGTTATTGTTTGTGTTTGACTGCTTGAGAGTCGAGGAGGAGGCGTT
ATATGTTTCGAACCAGGTTTTTGCCTGCCGCTGCTGGTAACCGGCTGGTA
ATTTTGTTATCGGAGATGGGGCAAGGGTGGAGGGAGATACACGCCAGCAG
GGAGGGAGACGGGAGGAGGGTGTGACCAATAGTCTATAGTATTATACTGC
TGCTGCTGCTGCTTAGCTAGCGGCGGAAGCGAGAGGAGGGGAGGAATTCT
TGCCATTGTTTAGTTGGTTGTTTCACGATCTCGAGAAAAGAGATATACGC
ACACACACGAGCTTTTCACACCGTATATGGTAGAGCTTTCACGGCGTGTA
ATAGTTATTTTTTTATTTTTTTGTACGAAAGTACACCAATCAATCTATCT
CTTCCACGCATGAAGAAGAGTCAGGGATAGAATAGCCATGAATTCATAGA
GCTGTTGCGTCTCGTTAGTTTTGGCTGTCGTACTACAGCATTGCCCGCAT
GTATATGCTTATGTTCAGTTCTCGTCATCATCCCCGCGTGATTTCTACCG
GAGGGAAGGATTGTCTG
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protein sequence of EsuBft789_3a-0001

>EsuBft789_3 ID=EsuBft789_3|Name=EsuBft789_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=214bp
MPAGAAVSAATPAATAVASGGSVLSAAVAATTTGAPALALGAAASATAPA
VTAVTRDGVDHTISVGGAASAPTEAMGAPRATAAKEAVVADVNEHLPNVV
TMTGGGSQRRRQRQPEDSCNDATVVDIDNGSDYGGWHAGEVCDGWDDSGC
GERGASTHPFDPEPCLRGCAAPAIAGRTTWWMDPAAASATTEREWMWSGF
GHCCALPAGGNGGL
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mRNA from alignment at Scaffold_176:98339..100755-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft789_3a-0001 ID=EsuBft789_3a-0001|Name=EsuBft789_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2417bp|location=Sequence derived from alignment at Scaffold_176:98339..100755- (Ectocarpus subulatus male Bft15b)
TGGCAGCAGTATTCTCCCAGCGGTGGTGGTTTCCCCGCTGCTGTAGCGGG
GAGAACTGGCCGTAAGGCCCGCGATGCCGGCAGGAGCGGCGGTATCGGCG
GCAACTCCAGCAGCAACGGCGGTGGCCTCCGGCGGCAGTGTTCTATCCGC
GGCGGTGGCGGCGACCACGACCGGAGCACCGGCGTTGGCACTTGGAGCGG
CAGCATCGGCGACGGCACCAGCAGTGACGGCGGTGACCCGCGATGGCGTC
GATCACACAATATCGGTTGGGGGGGCAGCCAGTGCACCCACTGAAGCCAT
GGGAGCACCAAGAGCGACAGCGGCGAAAGAGGCCGTCGTCGCTGATGTGA
ATGAGCATTTGCCCAACGTTGTAACGATGACGGGAGGAGGTAGTCAAAGA
CGGCGGCAACGACAGCCAGAGGATAGCTGCAACGACGCAACAGTGGTCGA
CATCGACAACGGCAGCGATTATGGTGGTTGGCATGCCGGCGAGGTTTGTG
ACGGCTGGGATGACAGCGGCTGTGGCGAGAGGGGGGCGTCCACGCACCCT
TTCGATCCCGAACCGTGCTTGCGAGGGTGCGCGGCGCCAGCGATTGCGGG
GAGGACGACCTGGTGGATGGATCCAGCAGCAGCATCGGCAACGACGGAGA
GGGAATGGATGTGGTCTGGTTTCGGGCACTGCTGCGCCCTTCCGGCCGGG
GGAAACGGTGGCTTATGAGGGCTGGGGTACGGGGGTCGGTGCTGGGGGTC
GACACCCCTTTCGACCGTGGAAAGATGTCGCGGGAGCAACGGTCGGGGCG
CTCGTGTTCGCGGCCGAGGCAGTGGCAGGAGGACCATGAGGCGGAGGAGG
GACTATGGAGGATCGGGAGAATTCAACAATGACAACAAGCAGCGCAACTT
CTGCTGGGGTCGTAAACTCGCCCAAGGCACGTGATGTTATCGCGTCCGTG
TTCTTTTCGTTTTGCTTTGATTTGGGGTTGTGCAGTCTGTTGTAATTTGT
GTTGGTCTTCAGATCCCATATAACTGTTGCACTCTTCGCCGTTGTTCGAA
TGGTTGCAAATCAGTTTTCCTATCGTTGCCACTCTTGCAGGTTTGGATTT
GCTTTGGTTTTGTTCTGCGGAGTGTCTACTCGCGTTTTACCTTGCAGTGA
CATTGATTTCCTTGGCCAAATGACGGGAAATTCCATGATAGGTTTTGGAT
AATTTTCTGGGATAGAAATGGAACATTGTGGCGGGGGGGGAGTTGCCAGC
AAACATTTCTCAGACGGCGATGGTAAAACATTTATATCTGGGAAAGGTTT
ATTCCACGCTCAGCTTACCTTCTTTGTTGGGACAGTATTCTCTATGGAAG
CTACCGCTATGCTTTTCTGGTGACACTGGATATGTGTAGGCGTTGTTTTG
CGGGCGACGTGCTACTGTTTTTTAGTCCCTCCGATGTACCGATAACCTTG
CAGTCAATCCTTGCGGACTACCAATATCCTTCCCATCTAGGACAAGTTGT
GCGCTGGCACGAGTTTATTTGTGACTGATGTGCTGGACGTGTGAAATATT
TTCTTTGAAATATGCATATTTTGGTTCCTTGTTTCGGTTGGAAGTTTTAT
CTGATGGATTTGGAATGCAGAGTTGGCATGCTGGACGTCGCGGTGTTCCG
TCGGTTATCATGGGGAGGGGGTGATGTGATAACATGATGCCCGCCGCAGT
ACCACAAGCAATGGTGCGTTGTGTGTCAGTTGAAGTTTTGGATTAATTCC
CGCGTTCACGGGCGAAGTTGATACGGAATCGAATGTTTTTTGGGACTTTC
TTATCGGGTTTTGGTAGTTGACGTTTCGATGATTTTCCGCGTTTTACAAG
GAGGGGTTATTGTTTGTGTTTGACTGCTTGAGAGTCGAGGAGGAGGCGTT
ATATGTTTCGAACCAGGTTTTTGCCTGCCGCTGCTGGTAACCGGCTGGTA
ATTTTGTTATCGGAGATGGGGCAAGGGTGGAGGGAGATACACGCCAGCAG
GGAGGGAGACGGGAGGAGGGTGTGACCAATAGTCTATAGTATTATACTGC
TGCTGCTGCTGCTTAGCTAGCGGCGGAAGCGAGAGGAGGGGAGGAATTCT
TGCCATTGTTTAGTTGGTTGTTTCACGATCTCGAGAAAAGAGATATACGC
ACACACACGAGCTTTTCACACCGTATATGGTAGAGCTTTCACGGCGTGTA
ATAGTTATTTTTTTATTTTTTTGTACGAAAGTACACCAATCAATCTATCT
CTTCCACGCATGAAGAAGAGTCAGGGATAGAATAGCCATGAATTCATAGA
GCTGTTGCGTCTCGTTAGTTTTGGCTGTCGTACTACAGCATTGCCCGCAT
GTATATGCTTATGTTCAGTTCTCGTCATCATCCCCGCGTGATTTCTACCG
GAGGGAAGGATTGTCTG
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Coding sequence (CDS) from alignment at Scaffold_176:98339..100755-

>EsuBft789_3a-0001 ID=EsuBft789_3a-0001|Name=EsuBft789_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=645bp|location=Sequence derived from alignment at Scaffold_176:98339..100755- (Ectocarpus subulatus male Bft15b)
ATGCCGGCAGGAGCGGCGGTATCGGCGGCAACTCCAGCAGCAACGGCGGT
GGCCTCCGGCGGCAGTGTTCTATCCGCGGCGGTGGCGGCGACCACGACCG
GAGCACCGGCGTTGGCACTTGGAGCGGCAGCATCGGCGACGGCACCAGCA
GTGACGGCGGTGACCCGCGATGGCGTCGATCACACAATATCGGTTGGGGG
GGCAGCCAGTGCACCCACTGAAGCCATGGGAGCACCAAGAGCGACAGCGG
CGAAAGAGGCCGTCGTCGCTGATGTGAATGAGCATTTGCCCAACGTTGTA
ACGATGACGGGAGGAGGTAGTCAAAGACGGCGGCAACGACAGCCAGAGGA
TAGCTGCAACGACGCAACAGTGGTCGACATCGACAACGGCAGCGATTATG
GTGGTTGGCATGCCGGCGAGGTTTGTGACGGCTGGGATGACAGCGGCTGT
GGCGAGAGGGGGGCGTCCACGCACCCTTTCGATCCCGAACCGTGCTTGCG
AGGGTGCGCGGCGCCAGCGATTGCGGGGAGGACGACCTGGTGGATGGATC
CAGCAGCAGCATCGGCAACGACGGAGAGGGAATGGATGTGGTCTGGTTTC
GGGCACTGCTGCGCCCTTCCGGCCGGGGGAAACGGTGGCTTATGA
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