EsuBft789_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft789_2a-0001
Unique NameEsuBft789_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_176contigScaffold_176:83314..87864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LQY3
ProteomeIdEsuBft789_2
Protein domainsIPR001891
Protein domainsIPR016040
Protein domainsSSF53223
Protein domainsPTHR23406
Protein domainsIPR012301
Ownerapollo_admin@sb-roscoff.fr
Notenad-dependent malic enzyme mitochondrial os:arabidopsis thaliana gn:nad-me1 pe:1 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length579
Hectar predicted targeting categoryother localisation
Evalue3.22e-47
EggNOG OGsCOG0281@1|root,KOG1257@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00105
KEGG koko:K00028,ko:K00029,ko:K13117
KEGG ReactionR00214,R00216
KEGG Pathwayko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200
KEGG ModuleM00169,M00171,M00172,M00355
EC1.1.1.39,1.1.1.40,3.6.4.13
Descriptionmalate dehydrogenase (decarboxylating) (NAD ) activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Cross References
External references for this mRNA
DatabaseAccession
GO0050897
EC1.1.1.40
GO0004471
GO0051287
GO1901575
GO0004473
GO0055114
EC4.1.1.3
GO0008948
GO0006108
GO0051289
GO0009628
GO0009507
GO0005524
GO0006633
GO0006996
GO0042803
GO0005759
EC1.1.1.38
EC1.1.1.39
GO0044723
GO0008270
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft789_2aEsuBft789_2aEctocarpus subulatus male Bft15bgeneScaffold_176 83314..87864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_2a-0001EsuBft789_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_176 83314..87864 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_2a-0001-exonagat-exon-9191Ectocarpus subulatus male Bft15bexonScaffold_176 83314..83484 +
EsuBft789_2a-0001-exonEsuBft789_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_176 83870..84057 +
EsuBft789_2a-0001-exonagat-exon-9190Ectocarpus subulatus male Bft15bexonScaffold_176 84209..84269 +
EsuBft789_2a-0001-exonagat-exon-9193Ectocarpus subulatus male Bft15bexonScaffold_176 86063..86097 +
EsuBft789_2a-0001-exonagat-exon-9192Ectocarpus subulatus male Bft15bexonScaffold_176 87741..87864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft789_2a-0001-cdsEsuBft789_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_176 83314..83484 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft789_2a-0001 ID=EsuBft789_2a-0001|Name=EsuBft789_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=579bp|location=Sequence derived from alignment at Scaffold_176:83314..87864+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTTGCTTCCCTGTGTCGATCCGTACCCGCGTCTCTTTTGTCTTCT
TGTTTTTCTGGACAGCTACCTCGGTCTTAACCAGGAGAGGCTAGAGGGAG
ACGAGTACCTCCAGGTGGTGGATGAGTTCGTTGCGGCGGTCAAGGCCAGG
TGGCCAAAGGCCTTGATTCAGGTGGACGCCATTGTCGTCACGGATGGATC
GAGGATACTCGGGCTCGGAGACCTGGGCATGAACGGTATGGGCATCTCGA
TTGGAAAGCTAAACCTTTACGTGGCGGCCGCGGGCTTCCACCCGGCCCGC
GTGCTCCCCTGCGTCATCGACGTCGGGACCAACAACAAGAAGCTTCTGGC
GGACGATAGGCGCAAGTGTATGCGCACGCGCAACCGAACCGTATTTGTGC
GCTTTCTCTGCATTGCGAAGGTTTGGTCGTTCTCGTTGACACCTTGGCCT
GCCCCGTTCGTGGTGTGCGGGGCCGGCAGCGCCGGGATGGGCGTGGTGCA
GTGGCTGTGCAAGGCGATGGAGAAGCACGGGGCCCCTCCTGACGAGGCTG
CAGGTGGGTGCCTCGTGGATGATTGCTGA
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protein sequence of EsuBft789_2a-0001

>EsuBft789_2 ID=EsuBft789_2|Name=EsuBft789_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=192bp
MLLLPCVDPYPRLFCLLVFLDSYLGLNQERLEGDEYLQVVDEFVAAVKAR
WPKALIQVDAIVVTDGSRILGLGDLGMNGMGISIGKLNLYVAAAGFHPAR
VLPCVIDVGTNNKKLLADDRRKCMRTRNRTVFVRFLCIAKVWSFSLTPWP
APFVVCGAGSAGMGVVQWLCKAMEKHGAPPDEAAGGCLVDDC
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mRNA from alignment at Scaffold_176:83314..87864+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft789_2a-0001 ID=EsuBft789_2a-0001|Name=EsuBft789_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4551bp|location=Sequence derived from alignment at Scaffold_176:83314..87864+ (Ectocarpus subulatus male Bft15b)
ATGCTGTTGCTTCCCTGTGTCGATCCGTACCCGCGTCTCTTTTGTCTTCT
TGTTTTTCTGGACAGCTACCTCGGTCTTAACCAGGAGAGGCTAGAGGGAG
ACGAGTACCTCCAGGTGGTGGATGAGTTCGTTGCGGCGGTCAAGGCCAGG
TGGCCAAAGGCCTTGATTCAGGTACTCGGCCAAGGACCGCGGGCACATGG
TCTCCATCGCCTACAACTGGCCCAGCCACGAGGTGATGATTTATTGATTG
TAGTAGGGTTGCGGCAAAGGTTGTTAGTCGTTGGTCGTTGTGGTCGTTCC
TGGATGGTGTTGCTGTTGCAGAAGGGTTGCGGTTGTTTGTCGTTGGTTGG
GTGTGGTTGCTGCTGGACGACGTTGCTGCCCTTTTCAGGTTCAGCAGCAT
CGGTTTGCCTAATCATCAAGTAGCCGCCATCACAACCACCACCATCAACA
ACAGCAATAACCACACCCATAACAACCGCCTCCATCGGCGACCACAACAA
ACAACAACAAACGATAATTGGACGCGGCTGGCCGGCCAACTCCTGGTCCC
GTTCAGGTGGACGCCATTGTCGTCACGGATGGATCGAGGATACTCGGGCT
CGGAGACCTGGGCATGAACGGTATGGGCATCTCGATTGGAAAGCTAAACC
TTTACGTGGCGGCCGCGGGCTTCCACCCGGCCCGCGTGCTCCCCTGCGTC
ATCGACGTCGGGACCAACAACAAGAAGCTTCTGGCGGACGATAGGTGACA
ACGGAGCGTAAGCTATTGACTGTACGGAAGCCTAAGCGAAAGCGTCAAGC
ATTGAGCGTTAAGCAGAAGCGTCGAGCGATACGCGTAAGCGATAAGCGTT
AAGCGTAAGCGTGAAGCGTCAGCGAATGCGTAAGAGTAACAGCAGGCGCA
AGTGTATGCGCACGCGCAACCGAACCGTATTTGTGCGCTTTCTCTGCATT
GCGAAGGTATGTCTGTCACCTTCGCTCCCAGTGTGTATGATTCTGTCCAC
CGCACCGAACGGTCTTGGCTTCTCTTCCGAACAGCGACAGCACGGTGCGG
GGTCACGCGGAGGAGAAGTTTCATCCCCCCGTGGTGCGGCCGTGCTTGGC
ATATCCTACATTTGGTTTCGACCGTGGTGGCCGGCGGACCTTTTAATGAA
ATGAAACCTCGTCAGTTCGGTGAACGCCTTCCAACCAAAGCGACCACATG
CGCTCGTGCCTGATGATGGATAGAATGTGAAGTCGTTTCTACTCCACGGA
CTTCCCCCGAAGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGTCGTAGAATGTTGCTGTTG
TTTTGGTGCACTGTACACGAGCGTAGCTGTTGTTACTGTTTTCGTCTCTC
GCATACCATGTTGCATCTGGCGGTTGATAGCTGTTGCTGCATGTTGCCGG
TGAGGTTGTTGTCCAGTCAATCGATGACGCACGTTGCCGGTGTCGTTGTT
GTCCAGTCCACCCATGATATGGTGGTGATAGGTGTGGTTGTGCGGACAGG
TTTGGTCGTTCTCGTTGACACCTTGGCCTGCCCCGTAAGTGTCTCGCGCC
GCGTTTTCGTCTCTTGGTTGCTGTTTCCTTTTTTTCCTAGTTTGAAGACT
TCCGCACGGAGTATGCCAGCAAGCTCCTCGAGCGCTACCGCTACAAGCAC
CTCTGCTTCAACGACGACATACAGGTTCGGTTCTGTTCCCGTTCTTGCTG
TTGGTGTGGTGGTCTGCAGTTGCGAGCATGCGACGGTGCTACACGGTACG
ATGGAAAAACGCGCGGGCGAGAAGAGGTGTAGTGTAGGAGTTTGAGAATA
GCGACGAGAAAGAGGTAGGTAGCGCTACACCCGTACCTCCGACAGGACGC
CGACAGCACACAGCCCACAGCCCACCCCAACCAAGACCACACTGCTGCAG
ACCCCTCCTGGGCGAGACGCTGCGAACATACTACGCAGAAGAGCTCGAGC
AGTCCGAAACCATGTCTTCTCCACATCGAGAGACCGTCTCCCACGGGACA
CCCCGTTCCCCGCCTTTGTATTTTTCGGGGACCCTCCTTGTCGTTTGGCG
GGTCCCCCTCCTGGTGATTTTACGGGATTCCTCTTGGTGATTTTGCGGGA
CCCCTCTCGGTGATTTTGCGGAGGCCCTCCTAGTGAGATTGGTTGATTAA
CCCGTGCTTTGCTGCTTTTGGTGAGTTGGTTGGTTGTTGCCGTCGTCGGC
TCGCGGGTGATTGATCAGGGAAGTGCGATTCTGCGGGCCCCCTCCTGTTG
TGTTATTGTTTATATTGATTCACTTGATTGCTTGGCCGGCGGATCGGTTG
TCGTCGTCCTCAGCGTCTCTCCCCGTGATTTGATTTGATCAGGGAACTGC
TGCCACCGCCCTCGCCGGAATCTACGCGGGACTGGCGGCCACCGGTCGGC
CTTACAGCGATATCCGCCGACTCAGGTCGAAAACCCGTTTCAAGACTTCG
GTTGACCATTTACCGTTGATAATTGGTTACGGTCACCTTGCCCATGCTGC
CGCCCGCCCTGCTCCGTCCTCTCGAGGGCGCGTGGGCAATGGTCTAACCG
CTAAGGCATGCAAAACATGAGAGTACGCCCCCCCTCTTCAAGTTCCGTCG
TGAAAAGTTTCCTCGACCAAGCGTATTGGTCGAAACTCGGGATTTGCTGA
TGGGGCCACTCGGGGAGTAGCGTGGACCTTCGGTCAAACCCCATGTCGAT
TTGTCGTGTCGGAATTTGCGCACCGGCGATAGAGGGGAGAATCTGCCGGC
TTAAAATCGCGCAACGCACCCCAGGCGTTGTTGCGACACACACTTCTAGC
AGCTGAAAAGGTGGCGTTCCATGGAGTGACACTCAGGCCTCCGACGGTCG
TTCGTTGGGAGACTTTTTTCACCCTCCAAGTCTGGGCATGCTTCATCGTT
GCCGATTTATCTTTATTTTTTTTATTTTTTTGCTTGTTTTTTGGAGTGTT
GTTCGGGTTTTCTTTTCTTTTGTGGAATATGTTTCGACTTTGTGGTGTTT
TTTTTTTGTTTTCTGTCTCCTGGTTGGTGTTGCTCCGTCCATGTGGTCGG
ACAAGAAGCGGGACAGAACGCAGGTGTTTTGTTCCTCGTTATTTTGTGTC
ATGTTTGTGGCATGTTTTTCACTCTTGAGGTGTTGTCTTTTGCTTTCATT
CTTGTGTGGTTTTGGGATTTTGTACAGGTTCGTGGTGTGCGGGGCCGGCA
GCGCCGGGATGGGCGTGGTGCAGTGGCTGTGCAAGGCGATGGAGAAGCAC
GGGGCCCCTCCTGACGAGGCTGCAGGTGGGTGCCTCGTGGATGATTGCTG
A
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Coding sequence (CDS) from alignment at Scaffold_176:83314..87864+

>EsuBft789_2a-0001 ID=EsuBft789_2a-0001|Name=EsuBft789_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=579bp|location=Sequence derived from alignment at Scaffold_176:83314..87864+ (Ectocarpus subulatus male Bft15b)
ATGCTGTTGCTTCCCTGTGTCGATCCGTACCCGCGTCTCTTTTGTCTTCT
TGTTTTTCTGGACAGCTACCTCGGTCTTAACCAGGAGAGGCTAGAGGGAG
ACGAGTACCTCCAGGTGGTGGATGAGTTCGTTGCGGCGGTCAAGGCCAGG
TGGCCAAAGGCCTTGATTCAGGTGGACGCCATTGTCGTCACGGATGGATC
GAGGATACTCGGGCTCGGAGACCTGGGCATGAACGGTATGGGCATCTCGA
TTGGAAAGCTAAACCTTTACGTGGCGGCCGCGGGCTTCCACCCGGCCCGC
GTGCTCCCCTGCGTCATCGACGTCGGGACCAACAACAAGAAGCTTCTGGC
GGACGATAGGCGCAAGTGTATGCGCACGCGCAACCGAACCGTATTTGTGC
GCTTTCTCTGCATTGCGAAGGTTTGGTCGTTCTCGTTGACACCTTGGCCT
GCCCCGTTCGTGGTGTGCGGGGCCGGCAGCGCCGGGATGGGCGTGGTGCA
GTGGCTGTGCAAGGCGATGGAGAAGCACGGGGCCCCTCCTGACGAGGCTG
CAGGTGGGTGCCTCGTGGATGATTGCTGA
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