EsuBft952_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft952_2a-0001
Unique Name	EsuBft952_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_176	contig	Scaffold_176:19366..22140 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft952_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Length	192
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft952_2a	EsuBft952_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_176 19366..22140 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft952_2a-0001	EsuBft952_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_176 19534..22023 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft952_2a-0001-exon	agat-exon-54990	Ectocarpus subulatus male Bft15b	exon	Scaffold_176 19366..19914 +
EsuBft952_2a-0001-exon	EsuBft952_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_176 20238..20788 +
EsuBft952_2a-0001-exon	agat-exon-54992	Ectocarpus subulatus male Bft15b	exon	Scaffold_176 20995..21194 +
EsuBft952_2a-0001-exon	agat-exon-54991	Ectocarpus subulatus male Bft15b	exon	Scaffold_176 21363..21842 +
EsuBft952_2a-0001-exon	agat-exon-54993	Ectocarpus subulatus male Bft15b	exon	Scaffold_176 22001..22140 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft952_2a-0001-exon	agat-five_prime_utr-15248	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_176 19366..19533 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft952_2a-0001-cds	EsuBft952_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_176 19534..19914 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft952_2a-0001-exon	agat-three_prime_utr-23428	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_176 22024..22140 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_176:19366..22140+
coding sequence from alignment at Scaffold_176:19366..22140+

spliced messenger RNA

>EsuBft952_2a-0001 ID=EsuBft952_2a-0001|Name=EsuBft952_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1920bp|location=Sequence derived from alignment at Scaffold_176:19366..22140+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATCCTGTTTCACCGCAAACATCGCCGACGCAAGCCTTGTTCTCCACGGC
AATCGACTCCGCTTGGTCGAATTACATACAGAGGAGACCACTCTCGAGGT
CATCAGACCTAATCTCGTTCTAGGACGGCCGTCCCGACTTGGGCCTGGCC
GTGGCTCGTGGCAGCCTCATGGAGGTAGACCGCACAATCGAAATCCGAGG
GGAAGAGAGGGTAGTGAGACAGCAGCGGAAGAACCACATCCGCGGGATAC
TGCTAATCAGCCAGCTGTTGAGAAAGGGTACCACCGAGGCAGCTGGAAAA
CCTGTGCAATCTGTGGTTGCTGATGAAGTTGAGCTCCTCGAAAAGGGTAG
AGAGCACGTTGAAGGCATCCGAGAGAGAGCATCGAAACGCGGGAAACGAC
AGCCTGCTGCTGCTGCTGCTGCTTCATCTGCTGCGGCGAAGAAGGCGAAG
CGCAAGGGGGCGGACGCAGCTCTCTCCGACCCTCTAGCATTGGCTCATGA
TGGCGGGACCAGAAGCGGTGCTACCCCAGAGACTTCGAGGGAGGAAGCGG
TTGCGGAGGAGCGTCGTTCCAGCGCGATGGATTTGATGCAGAACGACCCC
GTGTTGATGGAGCGAGTACGGGCCATGCTGGATGCTGGCGCGGCAGAGCA
GGCAGCAGCTAAGGTGGCGGCGATCGACGCGGCCAACACTCGTGCACTCC
GCGCGTCGTTGCAAGCGCTGAAGCAGCACTGCAACAGCTCGATAGGGTGG
ACCACTTACCAGACAGCGCTCGCTGTAGCAGCCGGAGCGGGAGAGCACAC
GTGTACTGACACGGACGTGTGCCACCCCGGCCAGCGGTGCAAGCCCGTTG
AGTCTGGTGGAGTGAGCCTTGCCGAGCGAGCTAACAGTCTCGGCATTCGG
CACGAGACTTTCAGCGACGCACGGTGGCGGATGCACAACACGAACCACGA
CATCGCCCCCAAGATCGCTGCGAGTGAGGGATGCTACGTGTACAACGAGC
GCAAGACACGGAGTGACGTGACGAATCCCGAGGTCATGGCTCTCGCCAGG
GCTTTCTGGCACTCCGACGACGTTTCCCGTGCAACAGGGAACTCAGGCAA
GGACATGTACAAGGAGTCTAAGAAGAGAGACGCACCCTCTCACCCTCGGA
GACAGCTCATGCACAAGGGAGACAGTGTGTGGAGGATGTTCCTCGAGAGC
CGGCGGTACTTGGCGCTGAAGTCAAGGCTACTTGAGCAGGACAGCAACTT
CACCGACCCTGGCAGGACGACGTTTCTGTCAACGCGGTGCGGGTGTTTAG
TGGACCCAACGGCATCGCAGTGTGCGTGTCAGATCCACACGCAGCAGACG
TTGTATCTCGAGGCCCTTTCGTTCTTGATGGGGTCGATACACCAAGACTG
CGACTGTGAGTGTAACTGGTGTGACGATCTTGGTTGTAAGAGGTGGTCTG
TCATGTGCCAGGACCTGAGCAAGTTTTCTGACGCTCTGGCGTGCGAGAAG
GTAAACTTGCTGGAGGGGGATTCCGACGGGGGATTTGAGTTTTGGGGTCG
GAAACCGGCATGCGCTGCGATGAAGTGTTCCGAGTGCGGGTTCGGAAAGC
CTGGAGGCATCCCGACCAACTGCACCGCTATTGCGAAAAACAGAGAGCGG
GTAGTAGCATGGATTCGCTTCGAAGACCAAACCATGCCTGACGGCAAGGT
GCACAAGAAGCAGCAGCTACCCCAGACGGGGAAGCTCGAAGACCTGTGGG
ACGAGTTCATGGCACACTCCGTGAAGGCGATACATGGAGCACCATGCCTT
TAGCCAAGTGGCAGCGCCAAGCCCACAAGATGTGCATGGCTACACTTCGT
CAGGGCGAGCTGTTGATCGAGACGGACTTCATCGAGAAGTACAGGCATGA
AGCACGCGTCGTGCTGACAT

protein sequence of EsuBft952_2a-0001

>EsuBft952_2 ID=EsuBft952_2|Name=EsuBft952_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=544bp
MEVDRTIEIRGEERVVRQQRKNHIRGILLISQLLRKGTTEAAGKPVQSVV
ADEVELLEKGREHVEGIRERASKRGKRQPAAAAAASSAAAKKAKRKGADA
ALSDPLALAHDGGTRSGATPETSREEAVAEERRSSAMDLMQNDPVLMERV
RAMLDAGAAEQAAAKVAAIDAANTRALRASLQALKQHCNSSIGWTTYQTA
LAVAAGAGEHTCTDTDVCHPGQRCKPVESGGVSLAERANSLGIRHETFSD
ARWRMHNTNHDIAPKIAASEGCYVYNERKTRSDVTNPEVMALARAFWHSD
DVSRATGNSGKDMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLAL
KSRLLEQDSNFTDPGRTTFLSTRCGCLVDPTASQCACQIHTQQTLYLEAL
SFLMGSIHQDCDCECNWCDDLGCKRWSVMCQDLSKFSDALACEKVNLLEG
DSDGGFEFWGRKPACAAMKCSECGFGKPGGIPTNCTAIAKNRERVVAWIR
FEDQTMPDGKVHKKQQLPQTGKLEDLWDEFMAHSVKAIHGAPCL

mRNA from alignment at Scaffold_176:19366..22140+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft952_2a-0001 ID=EsuBft952_2a-0001|Name=EsuBft952_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2775bp|location=Sequence derived from alignment at Scaffold_176:19366..22140+ (Ectocarpus subulatus male Bft15b)
CATCCTGTTTCACCGCAAACATCGCCGACGCAAGCCTTGTTCTCCACGGC
AATCGACTCCGCTTGGTCGAATTACATACAGAGGAGACCACTCTCGAGGT
CATCAGACCTAATCTCGTTCTAGGACGGCCGTCCCGACTTGGGCCTGGCC
GTGGCTCGTGGCAGCCTCATGGAGGTAGACCGCACAATCGAAATCCGAGG
GGAAGAGAGGGTAGTGAGACAGCAGCGGAAGAACCACATCCGCGGGATAC
TGCTAATCAGCCAGCTGTTGAGAAAGGGTACCACCGAGGCAGCTGGAAAA
CCTGTGCAATCTGTGGTTGCTGATGAAGTTGAGCTCCTCGAAAAGGGTAG
AGAGCACGTTGAAGGCATCCGAGAGAGAGCATCGAAACGCGGGAAACGAC
AGCCTGCTGCTGCTGCTGCTGCTTCATCTGCTGCGGCGAAGAAGGCGAAG
CGCAAGGGGGCGGACGCAGCTCTCTCCGACCCTCTAGCATTGGCTCATGA
TGGCGGGACCAGAAGCGGTGCTACCCCAGAGACTTCGAGGGAGGAAGCGG
TGAGTTTTGAGTCACTTCTGAGGTGCTGCTGAAAGGTGTTCCAGAGTGCT
TGATTGACTGCTTTACTTTGCGCGCCAGTTCGTGCCAGCTGCTCTGTTCT
TGAATTTGAAATTTGGTACACGCGCTGCCCGTCCTCTTTGCCCCCAAGAA
TTGAGGTCCATTCCACCACGTCGATATCTTAAGCACAGAAAGCGCATTAA
AAGTTGCACGGGTTTGGCGACTGCTGTAACTGCTGCAATGACGCTGCTAC
CGTGGTGTTTATTTGCCGCTCACTCATATGTTCCCCCGACTCCTCCAAAA
ACTACTGATACGTTGTACGCAGGTTGCGGAGGAGCGTCGTTCCAGCGCGA
TGGATTTGATGCAGAACGACCCCGTGTTGATGGAGCGAGTACGGGCCATG
CTGGATGCTGGCGCGGCAGAGCAGGCAGCAGCTAAGGTGGCGGCGATCGA
CGCGGCCAACACTCGTGCACTCCGCGCGTCGTTGCAAGCGCTGAAGCAGC
ACTGCAACAGCTCGATAGGGTGGACCACTTACCAGACAGCGCTCGCTGTA
GCAGCCGGAGCGGGAGAGCACACGTGTACTGACACGGACGTGTGCCACCC
CGGCCAGCGGTGCAAGCCCGTTGAGTCTGGTGGAGTGAGCCTTGCCGAGC
GAGCTAACAGTCTCGGCATTCGGCACGAGACTTTCAGCGACGCACGGTGG
CGGATGCACAACACGAACCACGACATCGCCCCCAAGATCGCTGCGAGTGA
GGGATGCTACGTGTACAACGAGCGCAAGACACGGAGTGACGTGACGAATC
CCGAGGTCATGGCTCTCGCCAGGGCTTTCTGGCACTCCGACGACGTTTCC
CGTGCAACAGGGAACTCAGGCAAGTTGCTGCGTTGCGTTGCTGTTACCGT
AGTCTCGGTTGTATGCGGCAGTTGTGTTTTATGTTGCGAAGGTCTACCGC
TACGTTTGTTGTACTACACGGCCACACGGTGCTGTGAACTGCAATACACC
CGTTCGTTTGTCCACATTACAGATGTGATGGAGTCTCTTAGAGAAAAAAA
CGTTTGGTTTCGCCCCCTGCAGGAGCCAGGGACATGTACAAGGAGTCTAA
GAAGAGAGACGCACCCTCTCACCCTCGGAGACAGCTCATGCACAAGGGAG
ACAGTGTGTGGAGGATGTTCCTCGAGAGCCGGCGGTACTTGGCGCTGAAG
TCAAGGCTACTTGAGCAGGACAGCAACTTCACCGACCCTGGCAGGACGAC
GTTTCTGTCAACGCGGTGCGGGTGTTTAGGTGGGTCAATCTGGTTCTACG
GTTAGAGTGCCCAAAACGTGTACCTCTGGTACCTGATAAACCCGATCAAT
GTTGCTGACGTATGGCTTTGTTGACGAGGAATAAGAGCTGACGTTTTTGT
TCTCCTCTGCTTTTGGTCTGTTGCGATGTTTCACCGCCCCTTTTCAGTGG
ACCCAACGGCATCGCAGTGTGCGTGTCAGATCCACACGCAGCAGACGTTG
TATCTCGAGGCCCTTTCGTTCTTGATGGGGTCGATACACCAAGACTGCGA
CTGTGAGTGTAACTGGTGTGACGATCTTGGTTGTAAGAGGTGGTCTGTCA
TGTGCCAGGACCTGAGCAAGTTTTCTGACGCTCTGGCGTGCGAGAAGGTA
AACTTGCTGGAGGGGGATTCCGACGGGGGATTTGAGTTTTGGGGTCGGAA
ACCGGCATGCGCTGCGATGAAGTGTTCCGAGTGCGGGTTCGGAAAGCCTG
GAGGCATCCCGACCAACTGCACCGCTATTGCGAAAAACAGAGAGCGGGTA
GTAGCATGGATTCGCTTCGAAGACCAAACCATGCCTGACGGCAAGGTGCA
CAAGAAGCAGCAGCTACCCCAGACGGGGAAGCTCGAAGACCTGTGGGACG
AGTTCATGGCACACTCCGTGAAGGCGAGTTCAACAATAGTATGCCCGGCA
GGTTTACACTGTTGACTATTCTAGTCAATAAGGAGCGCTCTTTGTAGCGA
TTCATAATAACATGTCTATTGACGACACAATATCATATCTATTGCCAACC
CATCCCCTGTTCACTTTCCCTTCCTTCCATTCCAGTACATGGAGCACCAT
GCCTTTAGCCAAGTGGCAGCGCCAAGCCCACAAGATGTGCATGGCTACAC
TTCGTCAGGGCGAGCTGTTGATCGAGACGGACTTCATCGAGAAGTACAGG
CATGAAGCACGCGTCGTGCTGACAT

Coding sequence (CDS) from alignment at Scaffold_176:19366..22140+

>EsuBft952_2a-0001 ID=EsuBft952_2a-0001|Name=EsuBft952_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1635bp|location=Sequence derived from alignment at Scaffold_176:19366..22140+ (Ectocarpus subulatus male Bft15b)
ATGGAGGTAGACCGCACAATCGAAATCCGAGGGGAAGAGAGGGTAGTGAG
ACAGCAGCGGAAGAACCACATCCGCGGGATACTGCTAATCAGCCAGCTGT
TGAGAAAGGGTACCACCGAGGCAGCTGGAAAACCTGTGCAATCTGTGGTT
GCTGATGAAGTTGAGCTCCTCGAAAAGGGTAGAGAGCACGTTGAAGGCAT
CCGAGAGAGAGCATCGAAACGCGGGAAACGACAGCCTGCTGCTGCTGCTG
CTGCTTCATCTGCTGCGGCGAAGAAGGCGAAGCGCAAGGGGGCGGACGCA
GCTCTCTCCGACCCTCTAGCATTGGCTCATGATGGCGGGACCAGAAGCGG
TGCTACCCCAGAGACTTCGAGGGAGGAAGCGGTTGCGGAGGAGCGTCGTT
CCAGCGCGATGGATTTGATGCAGAACGACCCCGTGTTGATGGAGCGAGTA
CGGGCCATGCTGGATGCTGGCGCGGCAGAGCAGGCAGCAGCTAAGGTGGC
GGCGATCGACGCGGCCAACACTCGTGCACTCCGCGCGTCGTTGCAAGCGC
TGAAGCAGCACTGCAACAGCTCGATAGGGTGGACCACTTACCAGACAGCG
CTCGCTGTAGCAGCCGGAGCGGGAGAGCACACGTGTACTGACACGGACGT
GTGCCACCCCGGCCAGCGGTGCAAGCCCGTTGAGTCTGGTGGAGTGAGCC
TTGCCGAGCGAGCTAACAGTCTCGGCATTCGGCACGAGACTTTCAGCGAC
GCACGGTGGCGGATGCACAACACGAACCACGACATCGCCCCCAAGATCGC
TGCGAGTGAGGGATGCTACGTGTACAACGAGCGCAAGACACGGAGTGACG
TGACGAATCCCGAGGTCATGGCTCTCGCCAGGGCTTTCTGGCACTCCGAC
GACGTTTCCCGTGCAACAGGGAACTCAGGCAAGGACATGTACAAGGAGTC
TAAGAAGAGAGACGCACCCTCTCACCCTCGGAGACAGCTCATGCACAAGG
GAGACAGTGTGTGGAGGATGTTCCTCGAGAGCCGGCGGTACTTGGCGCTG
AAGTCAAGGCTACTTGAGCAGGACAGCAACTTCACCGACCCTGGCAGGAC
GACGTTTCTGTCAACGCGGTGCGGGTGTTTAGTGGACCCAACGGCATCGC
AGTGTGCGTGTCAGATCCACACGCAGCAGACGTTGTATCTCGAGGCCCTT
TCGTTCTTGATGGGGTCGATACACCAAGACTGCGACTGTGAGTGTAACTG
GTGTGACGATCTTGGTTGTAAGAGGTGGTCTGTCATGTGCCAGGACCTGA
GCAAGTTTTCTGACGCTCTGGCGTGCGAGAAGGTAAACTTGCTGGAGGGG
GATTCCGACGGGGGATTTGAGTTTTGGGGTCGGAAACCGGCATGCGCTGC
GATGAAGTGTTCCGAGTGCGGGTTCGGAAAGCCTGGAGGCATCCCGACCA
ACTGCACCGCTATTGCGAAAAACAGAGAGCGGGTAGTAGCATGGATTCGC
TTCGAAGACCAAACCATGCCTGACGGCAAGGTGCACAAGAAGCAGCAGCT
ACCCCAGACGGGGAAGCTCGAAGACCTGTGGGACGAGTTCATGGCACACT
CCGTGAAGGCGATACATGGAGCACCATGCCTTTAG