EsuBft1546_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1546_3a-0001
Unique Name	EsuBft1546_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_170	contig	Scaffold_170:111975..112963 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1546_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	94
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-18_000390.2
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1546_3a	EsuBft1546_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_170 111975..112963 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1546_3a-0001-exon	agat-exon-14980	Ectocarpus subulatus male Bft15b	exon	Scaffold_170 111975..112864 -
EsuBft1546_3a-0001-exon	EsuBft1546_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_170 112906..112963 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1546_3a-0001-cds	EsuBft1546_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_170 111975..112864 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1546_3a-0001	EsuBft1546_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_170 111975..112963 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_170:111975..112963-
coding sequence from alignment at Scaffold_170:111975..112963-

spliced messenger RNA

>EsuBft1546_3a-0001 ID=EsuBft1546_3a-0001|Name=EsuBft1546_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=948bp|location=Sequence derived from alignment at Scaffold_170:111975..112963- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTTCAAGCACAGGAGGTCAAAATTCACGGATGCGAGTCCTGCAAC
CTCGCAGGCGCGGGTCAAGGCTGTCGATAAGGCTCCTTACTCTTCGGTGG
ATGATCCATGCGTGAGTAACGTGGACTTGAGGGATGTGCACTGGCCCGAA
GGCACCAAAGAAGTTGCCCTAATCCTATTTGACAAGGCGTTTGAAGGGGC
GACGTGGCCGGTGAGTCTGGAGCGGTTATCATTCTATGCCTTCCGATCCG
GGGGGCAGTCCTATCGCGTGAAAGATATTGGCTCGTTCAAACTTTCGCTT
GTTGGGGCCAATTTTAGTTTTCCTTCGGGCCTGCGAGACATCTTCCTTGG
CGCCGCTTTTGACCAGCCCATCCAAGACGTCGTGTGGCCGCAAGGGCTTC
AGAGACTGTCCGTCCCTAGATTCAATCAGCCTATTGACAACGTGAGGTGG
CCGCCGGCATTAAATCCGCCGTGGGAGATCCGCCTAACGGAAGACCCAAA
CACGCGTTTGGACGAGCTTGGATCCTATTGGGACCGTTTCAACTGCCCTT
TCACTCATTTGCCGGCGAGCCTTGAGACTCTTTGGCTTGGTGACAAGTTC
GACCATTCCCTTGAAGGCATCAACTGGCCGAGTGGGCTCGTCACTTTGGG
GCTTGGTTGCAAATTTAAGAGACTGAAACGCGGTGTTTCGTGGCCTTCGA
ATCTTCGAAACCTGTGCTTGCTGAGAGAGGTCAATTGGATCGAGCGCCCC
CCCTCCGGCTGCAAGGTCATAATCGCGCAGGAAGATGACCTGGATAATGA
CCCCAGTTACCCCTACGATTTGTACCTGAGATTGATGAAATTGACAATTT
TCGGACCATGTACGAGGACATTTATATGTGACCGATATACAGCGCGCCTT
TTGTTTATTGCTGAATGTGGTAAAGGAGGGGGAGTTTCGTCGTACTAG

protein sequence of EsuBft1546_3a-0001

>EsuBft1546_3 ID=EsuBft1546_3|Name=EsuBft1546_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=315bp
MRFKHRRSKFTDASPATSQARVKAVDKAPYSSVDDPCVSNVDLRDVHWPE
GTKEVALILFDKAFEGATWPVSLERLSFYAFRSGGQSYRVKDIGSFKLSL
VGANFSFPSGLRDIFLGAAFDQPIQDVVWPQGLQRLSVPRFNQPIDNVRW
PPALNPPWEIRLTEDPNTRLDELGSYWDRFNCPFTHLPASLETLWLGDKF
DHSLEGINWPSGLVTLGLGCKFKRLKRGVSWPSNLRNLCLLREVNWIERP
PSGCKVIIAQEDDLDNDPSYPYDLYLRLMKLTIFGPCTRTFICDRYTARL
LFIAECGKGGGVSSY

mRNA from alignment at Scaffold_170:111975..112963-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1546_3a-0001 ID=EsuBft1546_3a-0001|Name=EsuBft1546_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=989bp|location=Sequence derived from alignment at Scaffold_170:111975..112963- (Ectocarpus subulatus male Bft15b)
ATGCGGTTCAAGCACAGGAGGTCAAAATTCACGGATGCGAGTCCTGCAAC
CTCGCAGGGTACTCACGTTGGAATGGACATTCATTCACTCATTGTGCAGC
GCGGGTCAAGGCTGTCGATAAGGCTCCTTACTCTTCGGTGGATGATCCAT
GCGTGAGTAACGTGGACTTGAGGGATGTGCACTGGCCCGAAGGCACCAAA
GAAGTTGCCCTAATCCTATTTGACAAGGCGTTTGAAGGGGCGACGTGGCC
GGTGAGTCTGGAGCGGTTATCATTCTATGCCTTCCGATCCGGGGGGCAGT
CCTATCGCGTGAAAGATATTGGCTCGTTCAAACTTTCGCTTGTTGGGGCC
AATTTTAGTTTTCCTTCGGGCCTGCGAGACATCTTCCTTGGCGCCGCTTT
TGACCAGCCCATCCAAGACGTCGTGTGGCCGCAAGGGCTTCAGAGACTGT
CCGTCCCTAGATTCAATCAGCCTATTGACAACGTGAGGTGGCCGCCGGCA
TTAAATCCGCCGTGGGAGATCCGCCTAACGGAAGACCCAAACACGCGTTT
GGACGAGCTTGGATCCTATTGGGACCGTTTCAACTGCCCTTTCACTCATT
TGCCGGCGAGCCTTGAGACTCTTTGGCTTGGTGACAAGTTCGACCATTCC
CTTGAAGGCATCAACTGGCCGAGTGGGCTCGTCACTTTGGGGCTTGGTTG
CAAATTTAAGAGACTGAAACGCGGTGTTTCGTGGCCTTCGAATCTTCGAA
ACCTGTGCTTGCTGAGAGAGGTCAATTGGATCGAGCGCCCCCCCTCCGGC
TGCAAGGTCATAATCGCGCAGGAAGATGACCTGGATAATGACCCCAGTTA
CCCCTACGATTTGTACCTGAGATTGATGAAATTGACAATTTTCGGACCAT
GTACGAGGACATTTATATGTGACCGATATACAGCGCGCCTTTTGTTTATT
GCTGAATGTGGTAAAGGAGGGGGAGTTTCGTCGTACTAG

Coding sequence (CDS) from alignment at Scaffold_170:111975..112963-

>EsuBft1546_3a-0001 ID=EsuBft1546_3a-0001|Name=EsuBft1546_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=948bp|location=Sequence derived from alignment at Scaffold_170:111975..112963- (Ectocarpus subulatus male Bft15b)
ATGCGGTTCAAGCACAGGAGGTCAAAATTCACGGATGCGAGTCCTGCAAC
CTCGCAGGCGCGGGTCAAGGCTGTCGATAAGGCTCCTTACTCTTCGGTGG
ATGATCCATGCGTGAGTAACGTGGACTTGAGGGATGTGCACTGGCCCGAA
GGCACCAAAGAAGTTGCCCTAATCCTATTTGACAAGGCGTTTGAAGGGGC
GACGTGGCCGGTGAGTCTGGAGCGGTTATCATTCTATGCCTTCCGATCCG
GGGGGCAGTCCTATCGCGTGAAAGATATTGGCTCGTTCAAACTTTCGCTT
GTTGGGGCCAATTTTAGTTTTCCTTCGGGCCTGCGAGACATCTTCCTTGG
CGCCGCTTTTGACCAGCCCATCCAAGACGTCGTGTGGCCGCAAGGGCTTC
AGAGACTGTCCGTCCCTAGATTCAATCAGCCTATTGACAACGTGAGGTGG
CCGCCGGCATTAAATCCGCCGTGGGAGATCCGCCTAACGGAAGACCCAAA
CACGCGTTTGGACGAGCTTGGATCCTATTGGGACCGTTTCAACTGCCCTT
TCACTCATTTGCCGGCGAGCCTTGAGACTCTTTGGCTTGGTGACAAGTTC
GACCATTCCCTTGAAGGCATCAACTGGCCGAGTGGGCTCGTCACTTTGGG
GCTTGGTTGCAAATTTAAGAGACTGAAACGCGGTGTTTCGTGGCCTTCGA
ATCTTCGAAACCTGTGCTTGCTGAGAGAGGTCAATTGGATCGAGCGCCCC
CCCTCCGGCTGCAAGGTCATAATCGCGCAGGAAGATGACCTGGATAATGA
CCCCAGTTACCCCTACGATTTGTACCTGAGATTGATGAAATTGACAATTT
TCGGACCATGTACGAGGACATTTATATGTGACCGATATACAGCGCGCCTT
TTGTTTATTGCTGAATGTGGTAAAGGAGGGGGAGTTTCGTCGTACTAG