EsuBft1018_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1018_8a-0001
Unique NameEsuBft1018_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_161contigScaffold_161:335703..335957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LR81
ProteomeIdEsuBft1018_8
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length25
Hectar predicted targeting categorysignal anchor
Evalue6.87e-52
EggNOG OGs2CMNQ@1|root,2QR22@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1018_8aEsuBft1018_8aEctocarpus subulatus male Bft15bgeneScaffold_161 335703..335957 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1018_8a-0001-exonEsuBft1018_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_161 335703..335957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1018_8a-0001-cdsEsuBft1018_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_161 335703..335957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1018_8a-0001EsuBft1018_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_161 335703..335957 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1018_8a-0001 ID=EsuBft1018_8a-0001|Name=EsuBft1018_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=255bp|location=Sequence derived from alignment at Scaffold_161:335703..335957- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAGCTTTTCCGAGATACTCGAGCAAACCATACACGAGTGGCCGAA
TGTGCCGGACGAGACGTACTGGGCCTTGGTGTCCCTGCCCTTCCTGACCC
TAGTGGTATGCTGCGTCTGGCTGCGAGTGGTGTGGCCTTGCCCGACTCAC
GACAATAACCTGAAGGACTTCACCCCTGCGACGCTGCTCGGCGACACCGG
CGGCGGCGGCAGCGTCACCGAGAGGAGCGCGCTGCAAGACGCCTCCAATG
GGTGA
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protein sequence of EsuBft1018_8a-0001

>EsuBft1018_8 ID=EsuBft1018_8|Name=EsuBft1018_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=84bp
MRSFSEILEQTIHEWPNVPDETYWALVSLPFLTLVVCCVWLRVVWPCPTH
DNNLKDFTPATLLGDTGGGGSVTERSALQDASNG
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mRNA from alignment at Scaffold_161:335703..335957-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1018_8a-0001 ID=EsuBft1018_8a-0001|Name=EsuBft1018_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=255bp|location=Sequence derived from alignment at Scaffold_161:335703..335957- (Ectocarpus subulatus male Bft15b)
ATGAGGAGCTTTTCCGAGATACTCGAGCAAACCATACACGAGTGGCCGAA
TGTGCCGGACGAGACGTACTGGGCCTTGGTGTCCCTGCCCTTCCTGACCC
TAGTGGTATGCTGCGTCTGGCTGCGAGTGGTGTGGCCTTGCCCGACTCAC
GACAATAACCTGAAGGACTTCACCCCTGCGACGCTGCTCGGCGACACCGG
CGGCGGCGGCAGCGTCACCGAGAGGAGCGCGCTGCAAGACGCCTCCAATG
GGTGA
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Coding sequence (CDS) from alignment at Scaffold_161:335703..335957-

>EsuBft1018_8a-0001 ID=EsuBft1018_8a-0001|Name=EsuBft1018_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=255bp|location=Sequence derived from alignment at Scaffold_161:335703..335957- (Ectocarpus subulatus male Bft15b)
ATGAGGAGCTTTTCCGAGATACTCGAGCAAACCATACACGAGTGGCCGAA
TGTGCCGGACGAGACGTACTGGGCCTTGGTGTCCCTGCCCTTCCTGACCC
TAGTGGTATGCTGCGTCTGGCTGCGAGTGGTGTGGCCTTGCCCGACTCAC
GACAATAACCTGAAGGACTTCACCCCTGCGACGCTGCTCGGCGACACCGG
CGGCGGCGGCAGCGTCACCGAGAGGAGCGCGCTGCAAGACGCCTCCAATG
GGTGA
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