EsuBft105_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft105_3a-0001
Unique Name	EsuBft105_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_100	contig	Scaffold_100:638233..641566 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft105_3
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	284
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft105_3a	EsuBft105_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_100 638233..641566 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_3a-0001	EsuBft105_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_100 638233..638527 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_3a-0001-exon	agat-exon-19263	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 638233..638248 +
EsuBft105_3a-0001-exon	EsuBft105_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 638427..639945 +
EsuBft105_3a-0001-exon	agat-exon-19262	Ectocarpus subulatus male Bft15b	exon	Scaffold_100 640259..641566 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_3a-0001-cds	EsuBft105_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_100 638233..638248 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft105_3a-0001-exon	agat-three_prime_utr-592	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_100 638528..639945 +
EsuBft105_3a-0001-exon	agat-three_prime_utr-593	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_100 640259..641566 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_100:638233..641566+
coding sequence from alignment at Scaffold_100:638233..641566+

spliced messenger RNA

>EsuBft105_3a-0001 ID=EsuBft105_3a-0001|Name=EsuBft105_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2843bp|location=Sequence derived from alignment at Scaffold_100:638233..641566+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGTTATCGCGGCGATCCAAAGATGCTGATGATGCGGTCGATAAT
GGCCTGCGCGACAGTGATTGCTGACTTGTTGGGAATCGGAGTCAACACGG
TGAATCGGGTTAGTTAGGTGGTCCATCATGGATAGGACATATTTGCACCG
TACAGTGTACCCCGGCGGCTGAAATTGATTCTACTTTACATTCAACTAGG
TCAACCGAAATACGTTCGAACGGTCTTTGTACTGGTACATGTCCCGTTGG
TAATTTGTTTCGATTATGGACTGTTTTTCGACGTTGACAGGCTTGGCATT
CTTCACACCAAGTACGGACGTCCCGATTCATGGTTGGCCACCAGAACTTT
TGGAGGATCTTCTCGTAAGTCGGTCTAGACACTAAGTGGCCTCCAGGTAA
TACGTGGTCGTGATAGGCGTGCAGAACTAGTCTGGTAAGGGCCTGAGGCA
ACACTAATTGGTCACTAAACGTACTACATTTTCGGAGGTAGCCTGGTAAA
TACGATTTAAACAACAATCCATCACGCACGAGGTAGTATGACATGGCGGC
AGTGGCTGCCTCGGTATCAGGTAATTGGGCGTCAGTTTTTGTAAGGTAGT
CGACATAGATAGGTGCCATGTTCAAGAGCTTGTTTCTCACGCAATATATC
GCGGTTGTTAGTTTCAAATACGTTGGTCGCGCTGATGTTGACTGATTTCT
CCGCGAATAATTCGCGATCACTTTGAACTGGTCGCAAGTTGTCCAAACGA
TCTGCAGATACTTGGTACGGACATTGCGGAACATTTGTGTGCAGTGCAGG
GTCATCAGCCACATTCCTGCATATCGGTGCAAGTTGTGGTGCTTCCAACT
GTTGTTGGTGATCAAACGCAAACAACCGAGATAGGGTGTCTGGGACAACA
TGTAACTTTCCGGGCTTGTGTCGCACGGTAAAGTCAAAGGACTGCAAAGC
ATTTGCACATCTAGTCAGCATATTTGACGTGTCTTGCGTTGTGTACAAAT
ATCTCAATGCCGCGTGATCCATGACAACTTCGAAATGTCTGCCCCACAAG
TAGGGTCGCCAGTGTTGTAAACTCAAGACCACACCGTGACGTTCCTTCAT
CGTCGCAGAGTAGTGACGTTGAGCTTTGTTAAATCGTTGGCTAAAATAAG
CGATATTCTTAACATCGTCGCCGTTCTTTTGGCCCAGGAATGCTCCTGTA
CCAACTTCACTAGCATCTACGTGAACCACAAAGTCTTTAGTAAAGTCAGG
GAAACAAAACACAGTGTGCTTTGCTGAGTAAGCGTTTAATATCTGCACAA
GCCTTATCATGTTTCTGGTTCCAACGTTTCGCGATCGATTTTACATGCTC
CTGTTGTGTGAGTTCGACCAGCGGTGCGATCACCGTAGAAAGGTCGGATA
TTAATTTCCTCACATGGTTACCATTCCCAATACTGAGCGAAGTGCTTTGG
TTGTGTTGGGTACAGGCAAGTCGATGATAGATTTTATACGATCTTCCCCA
ATGCGAATCCCTTTTGCAGACAGTATGTGCCCCAGGCTGACTGGATATCG
CAGACAGTAATAAATTTTGCTCCTCCAACGGTATCAATATGGGATTCTAT
ATTATTTGGCATGGGCCAAGATTTTCGAATTAAACTCTTGTTAATTGTAG
AGCGGTAGTCAACGCAGAATCGAGGAGTGCCATCAGCTTTATCTACGATG
GTAACAGCAGATCCCCACGAACTGGGTCTGTTCAATAATCTCCTCCTCTT
CCATTTGTTCCACACACTTGTCGATAACTTCTTGAGCTCTAGGATTAGTA
CGATAGGGAGCACGGTCGACTGGTGGTGGCATAGTGCCTGTTTCTAGCGG
AAAATCTGCCTTGGCTATCTTGGATTTTCCGAGCTCCTTCGGAGTTTATG
AAAACACGTTACGGTATTTCGCGTATATATTCAAGACTTGCGAGCATTGT
TGAGGAGTAAATGCAGTGTTTGCGAACGCTTTTTTCATGGCTCGTTTCAA
CTCGTCCCGCTTGTGTCTGAATGTGGTTTGGTCGCTATTGACAGCGCTAA
CTGTTTCATCAGCAACCGATTTTACTGGCGAAATGTACCCCAAAATAGTG
TCACGTGCAATGTGAACGTGTCGTATGGATGGATTAGCAACTTGTACTGC
AGCAGACTTGTCTTTTGCTGACCAATTGCATACCGTTCTAGCGACTACGA
TTGTACGGAACGCTTCGGGTATATTTTCAGACGTTTCGATGTCTTGGGCA
GTGACAATCCGTGGTTCTATCAACACAGGCGTGTTTGTCTGTGGTGCATG
TTCTGTCACGACGTCTACTGCCATTTCACTTTCGGGGGGGATGCAGAATC
TTCTAGAGAGGTATACGGGCACCGCTCCTATCGATGGGTCAAGCGTCACT
ACAGAAATTTGCGCTGGGGCATCATTGTTGGTGCCCACTTGACTATTCGT
ACGTCTGTGAGTTGCCGGAATTTTGCTTGTTGAATCCTAAATGAAAGTTG
CTCACCGCACCAATGAAGGACGGTACCAAAGGCATTCATAATGCTATTAT
CGAGCAACATCTTATCCGGACCTAGGTTGGGCAACACGTGGGCCTCCACT
GGTAGTGTGATATCTTCCAGTGTGAGCTTAAAACGGATGTATCCTAGGAT
TTCTAACGCTGATCCGCATGGGAATTCAGCTGAATTGCGCCAGGAGGCAC
AGGTTTCAGAGGTAAACGTTTGAGGACTGGATGCGATTTAATAAAAGACG
CTGATATACACGGTACATCAGCTGCTGTGTCGGTAGTGAGGTCAGCCACA
CAGCGTAATTACAAACTCGGGCAGGAATTCGCACTCTCTTGGA

protein sequence of EsuBft105_3a-0001

>EsuBft105_3 ID=EsuBft105_3|Name=EsuBft105_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=38bp
MPSYRGDPKMLMMRSIMACATVIADLLGIGVNTVNRVS

mRNA from alignment at Scaffold_100:638233..641566+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft105_3a-0001 ID=EsuBft105_3a-0001|Name=EsuBft105_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3334bp|location=Sequence derived from alignment at Scaffold_100:638233..641566+ (Ectocarpus subulatus male Bft15b)
ATGCCCAGTTATCGCGGTTCGTTCATGGAACTACGCATGGCGAGCACATG
GTAGCATGTACTCGTTCTGAAACATTATTACCTTGCGGACGGTAGGGTGT
CGTGCGAGTTTTTTATACTTCAGAATACGCTGTAGTTGCTGGGCTACACT
GTTGTTCTCAAGTTCAGGTCCTTGATCGGAATGCAACAATTCAGGCGATC
CAAAGATGCTGATGATGCGGTCGATAATGGCCTGCGCGACAGTGATTGCT
GACTTGTTGGGAATCGGAGTCAACACGGTGAATCGGGTTAGTTAGGTGGT
CCATCATGGATAGGACATATTTGCACCGTACAGTGTACCCCGGCGGCTGA
AATTGATTCTACTTTACATTCAACTAGGTCAACCGAAATACGTTCGAACG
GTCTTTGTACTGGTACATGTCCCGTTGGTAATTTGTTTCGATTATGGACT
GTTTTTCGACGTTGACAGGCTTGGCATTCTTCACACCAAGTACGGACGTC
CCGATTCATGGTTGGCCACCAGAACTTTTGGAGGATCTTCTCGTAAGTCG
GTCTAGACACTAAGTGGCCTCCAGGTAATACGTGGTCGTGATAGGCGTGC
AGAACTAGTCTGGTAAGGGCCTGAGGCAACACTAATTGGTCACTAAACGT
ACTACATTTTCGGAGGTAGCCTGGTAAATACGATTTAAACAACAATCCAT
CACGCACGAGGTAGTATGACATGGCGGCAGTGGCTGCCTCGGTATCAGGT
AATTGGGCGTCAGTTTTTGTAAGGTAGTCGACATAGATAGGTGCCATGTT
CAAGAGCTTGTTTCTCACGCAATATATCGCGGTTGTTAGTTTCAAATACG
TTGGTCGCGCTGATGTTGACTGATTTCTCCGCGAATAATTCGCGATCACT
TTGAACTGGTCGCAAGTTGTCCAAACGATCTGCAGATACTTGGTACGGAC
ATTGCGGAACATTTGTGTGCAGTGCAGGGTCATCAGCCACATTCCTGCAT
ATCGGTGCAAGTTGTGGTGCTTCCAACTGTTGTTGGTGATCAAACGCAAA
CAACCGAGATAGGGTGTCTGGGACAACATGTAACTTTCCGGGCTTGTGTC
GCACGGTAAAGTCAAAGGACTGCAAAGCATTTGCACATCTAGTCAGCATA
TTTGACGTGTCTTGCGTTGTGTACAAATATCTCAATGCCGCGTGATCCAT
GACAACTTCGAAATGTCTGCCCCACAAGTAGGGTCGCCAGTGTTGTAAAC
TCAAGACCACACCGTGACGTTCCTTCATCGTCGCAGAGTAGTGACGTTGA
GCTTTGTTAAATCGTTGGCTAAAATAAGCGATATTCTTAACATCGTCGCC
GTTCTTTTGGCCCAGGAATGCTCCTGTACCAACTTCACTAGCATCTACGT
GAACCACAAAGTCTTTAGTAAAGTCAGGGAAACAAAACACAGTGTGCTTT
GCTGAGTAAGCGTTTAATATCTGCACAAGCCTTATCATGTTTCTGGTTCC
AACGTTTCGCGATCGATTTTACATGCTCCTGTTGTGTGAGTTCGACCAGC
GGTGCGATCACCGTAGAAAGGTCGGATATTAATTTCCTCACATGGTTACC
ATTCCCAATACTGAGCGAAGTGCTTTGGTTGTGTTGGGTACAGGCAAGTC
GATGATAGATTTTATACGATCTTCCCCAATGCGAATCCCTTTTGCAGACA
GTATGTGCCCCAGGTATTTTACTTTCTGTGGTCCAAATTGAGCTTTGGAG
GGTTTCAAGATACGACCGGCCGCTGGGAGTGCTTGGAGCATGCTTTCTAA
CAAGGTTAGATGGTTCTCCCAATTTGAGCTGCAAATGTCATCCATATACA
CCAAAAAAAGTCCACTGCGTGGTCCGAAGTGAGAGAATGCTAGAGACATC
ATTCGGGCAAATAGAAAAGGAGCATTCGCCATGCCGAAGGGATGACGTTT
GAAGACCCATTTCCCTTTGTGTGTCACGAAAGCGGTCTTTTCTTGTTCTG
CTTCGTCAACTTCATTTTGGTGGTAGGCTGACTGGATATCGCAGACAGTA
ATAAATTTTGCTCCTCCAACGGTATCAATATGGGATTCTATATTATTTGG
CATGGGCCAAGATTTTCGAATTAAACTCTTGTTAATTGTAGAGCGGTAGT
CAACGCAGAATCGAGGAGTGCCATCAGCTTTATCTACGATGGTAACAGCA
GATCCCCACGAACTGGGTCTGTTCAATAATCTCCTCCTCTTCCATTTGTT
CCACACACTTGTCGATAACTTCTTGAGCTCTAGGATTAGTACGATAGGGA
GCACGGTCGACTGGTGGTGGCATAGTGCCTGTTTCTAGCGGAAAATCTGC
CTTGGCTATCTTGGATTTTCCGAGCTCCTTCGGAGTTTATGAAAACACGT
TACGGTATTTCGCGTATATATTCAAGACTTGCGAGCATTGTTGAGGAGTA
AATGCAGTGTTTGCGAACGCTTTTTTCATGGCTCGTTTCAACTCGTCCCG
CTTGTGTCTGAATGTGGTTTGGTCGCTATTGACAGCGCTAACTGTTTCAT
CAGCAACCGATTTTACTGGCGAAATGTACCCCAAAATAGTGTCACGTGCA
ATGTGAACGTGTCGTATGGATGGATTAGCAACTTGTACTGCAGCAGACTT
GTCTTTTGCTGACCAATTGCATACCGTTCTAGCGACTACGATTGTACGGA
ACGCTTCGGGTATATTTTCAGACGTTTCGATGTCTTGGGCAGTGACAATC
CGTGGTTCTATCAACACAGGCGTGTTTGTCTGTGGTGCATGTTCTGTCAC
GACGTCTACTGCCATTTCACTTTCGGGGGGGATGCAGAATCTTCTAGAGA
GGTATACGGGCACCGCTCCTATCGATGGGTCAAGCGTCACTACAGAAATT
TGCGCTGGGGCATCATTGTTGGTGCCCACTTGACTATTCGTACGTCTGTG
AGTTGCCGGAATTTTGCTTGTTGAATCCTAAATGAAAGTTGCTCACCGCA
CCAATGAAGGACGGTACCAAAGGCATTCATAATGCTATTATCGAGCAACA
TCTTATCCGGACCTAGGTTGGGCAACACGTGGGCCTCCACTGGTAGTGTG
ATATCTTCCAGTGTGAGCTTAAAACGGATGTATCCTAGGATTTCTAACGC
TGATCCGCATGGGAATTCAGCTGAATTGCGCCAGGAGGCACAGGTTTCAG
AGGTAAACGTTTGAGGACTGGATGCGATTTAATAAAAGACGCTGATATAC
ACGGTACATCAGCTGCTGTGTCGGTAGTGAGGTCAGCCACACAGCGTAAT
TACAAACTCGGGCAGGAATTCGCACTCTCTTGGA

Coding sequence (CDS) from alignment at Scaffold_100:638233..641566+

>EsuBft105_3a-0001 ID=EsuBft105_3a-0001|Name=EsuBft105_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=117bp|location=Sequence derived from alignment at Scaffold_100:638233..641566+ (Ectocarpus subulatus male Bft15b)
ATGCCCAGTTATCGCGGCGATCCAAAGATGCTGATGATGCGGTCGATAAT
GGCCTGCGCGACAGTGATTGCTGACTTGTTGGGAATCGGAGTCAACACGG
TGAATCGGGTTAGTTAG