EsuBft1072_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1072_7a-0001
Unique NameEsuBft1072_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_98contigScaffold_98:337923..342894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog1121033.AUCF01000003_gene3455
ProteomeIdEsuBft1072_7
Protein domainsSignalP-TM
Protein domainsIPR007607
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl204441|Rhodospirillales
Length164
Hectar predicted targeting categoryother localisation
Evalue1.52e-15
EggNOG OGsCOG1664@1|root,COG1664@2|Bacteria,1N26P@1224|Proteobacteria,2UD9Q@28211|Alphaproteobacteria,2JTDQ@204441|Rhodospirillales
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-09_004730.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionPolymer-forming cytoskeletal
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1072_7aEsuBft1072_7aEctocarpus subulatus male Bft15bgeneScaffold_98 337923..342894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1072_7a-0001EsuBft1072_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_98 338863..342835 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1072_7a-0001-exonEsuBft1072_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_98 337923..338967 -
EsuBft1072_7a-0001-exonagat-exon-57121Ectocarpus subulatus male Bft15bexonScaffold_98 340503..340655 -
EsuBft1072_7a-0001-exonagat-exon-57120Ectocarpus subulatus male Bft15bexonScaffold_98 341069..341248 -
EsuBft1072_7a-0001-exonagat-exon-57122Ectocarpus subulatus male Bft15bexonScaffold_98 342626..342894 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1072_7a-0001-exonagat-three_prime_utr-687Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_98 337923..338862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1072_7a-0001-cdsEsuBft1072_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_98 338863..338967 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1072_7a-0001-exonagat-five_prime_utr-423Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_98 342836..342894 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1072_7a-0001 ID=EsuBft1072_7a-0001|Name=EsuBft1072_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1647bp|location=Sequence derived from alignment at Scaffold_98:337923..342894- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TACACAGCGCAAGTCGGCACGCAGAGGCTGTTGCGGTAGCGCAGAGGCTG
AGTAGGGGGATGCGAAGTAGCAGCAATACCTCCAGCAGGCGAAGCAGAAG
CAAAAGCGGGGGCAGGACCGGGAGCAGCGGGAACCTGGGCGTCATCGCGG
CCAAGGCGCGAGGCGAACAACACACTCGTTCGAGTTCGGTTGTCGACCTG
GTTGACATCCTCGAGAAGAAGGAGCTGTCGGCCGCCGAGGTCATGGTCAT
TCGACAAAGCATGGTGCAGACTCAAGACAGACTGTTTGTAGCCACCAACC
CTAACGAGGTCGGTGGTGGTCCCGGTGCCGGTTCGGCCGAACGAAAGAGC
TCGGCGGCATCGGCTGCGGCGATGGGGGAGGTGGTTGGCGACGACAGCAT
GGTCGTGGGCAAGGGCATCATGATCAAGGGCGACGTTGACAACTGCGCGA
CTCTAATCGTGGAAGGCTACTTCGAGGGAAACTTTCGGGGGGGGTTCCTA
GCGGTGCCAAAGGGCGGGAAGTACGTGGGGATGGCTGAAGTGCGAAGAGC
TGATATCGGCGGCCGGTTGCACGGAACCCTCAGCGCGAGCACCCTACTCG
AGGTGCGGGCATCCGGCAAGATCGAGGGTATGGTGCGCTATAACGATGTC
AAGCTCGAGCAGGGGGGCAGCATGGTCGGCGATATCCAGCAAGGAACGAA
AACGTAGCTGGACGGCTTACCACCAACTGGTACTTATCGCCGCGTGCGCG
ATGATGACGGCCTCGCGCCGTAACTGCTGTATGATGTGCTTCGATTGCAA
TCGGAGCATGTATGTCCCGCTGCTGCTGGGGTCTGTTACAGACGGGGCGG
TTCTGTAGGTCTTCCTTGTGAGGATACCACACCCTCTGTCAAGCCGTGCA
CTTGCAAGTAGTACTCTGCTGCTCGAATCGCTCTTGTGGCGTCCTTGTTA
CGTCCTGTTCAGTGTACTCGGTTCATGTGTCTATTGTGCTCCGTCAGGTG
TAACATTCATTTAGGTCGTCTCGAGAGCCGGTAGAAGCAGATCCGCGGCA
GATGAGTGTTCATCGCTGGAAAGGTTTAGTATTTTTTTTCCGTGTCACTT
CGTCTGTATATGTACATTACCTACTGAATATCTACGGTTGGGTGTTTCAA
GAATATTAATCAGTCCCATGTTGTACACGGAGCGTACAATATTATAGCCG
ACGTGGTAGTGTCATTCGTGTTCTTCGACGTATAAGTAGTGGAGACGTTT
AACACTTTGAAGGCGTTACCATGGTCGTGCACCCTGTCGTCTCGTATTTT
GGTTTTTCAGGACCCCCAAAACTTTCCACCCGACTGCAGGGAGGGTAGTG
GAAGGTATTCTATACCAGGGGGCATGTTTTCGTTTCGTTCTTTTTGAGAG
TGACGTGGTAGGAATGGGATACGACAGATGTTGACGGGAATTCTATTGAG
AAGGCAAGGCACTATGAGTTTTATCGCTACTTGCTGGTGTTCTTGTCTTG
GAAAACTTTTGGTTAGGCCCGCCTCGTGGAACACTTTAGGTTTAGCCGAC
GCTTATACTCCGCGAAACACAAGCACTAAATGTGAATCCGACTTTGGCGT
AATACACAACAAGGCCTTGCGCGCCAGCAAAAAGCAAAAAACACCCG
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protein sequence of EsuBft1072_7a-0001

>EsuBft1072_7 ID=EsuBft1072_7|Name=EsuBft1072_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=215bp
MRSSSNTSSRRSRSKSGGRTGSSGNLGVIAAKARGEQHTRSSSVVDLVDI
LEKKELSAAEVMVIRQSMVQTQDRLFVATNPNEVGGGPGAGSAERKSSAA
SAAAMGEVVGDDSMVVGKGIMIKGDVDNCATLIVEGYFEGNFRGGFLAVP
KGGKYVGMAEVRRADIGGRLHGTLSASTLLEVRASGKIEGMVRYNDVKLE
QGGSMVGDIQQGTKT
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mRNA from alignment at Scaffold_98:337923..342894-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1072_7a-0001 ID=EsuBft1072_7a-0001|Name=EsuBft1072_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4972bp|location=Sequence derived from alignment at Scaffold_98:337923..342894- (Ectocarpus subulatus male Bft15b)
TACACAGCGCAAGTCGGCACGCAGAGGCTGTTGCGGTAGCGCAGAGGCTG
AGTAGGGGGATGCGAAGTAGCAGCAATACCTCCAGCAGGCGAAGCAGAAG
CAAAAGCGGGGGCAGGACCGGGAGCAGCGGGAACCTGGGCGTCATCGCGG
CCAAGGCGCGAGGCGAACAACACACTCGTTCGAGTTCGGTTGTCGACCTG
GTTGACATCCTCGAGAAGAAGGAGCTGTCGGCCGCCGAGGTCATGGTCAT
TCGACAAAGCATGGTGCAGGTCAGTGATGTGTGAGGACCGGTCCTGCGTT
ATCGAGGACGTACGCCTCCTTTTTCATCGCCGATGTGATTGTTCTGCGGC
GGAGCGTTACCTGGCTCACACGAATCCTGTTTTGTACCACCTCTCTGTTG
CCCCAAGCCCCACGCCTTGCCGCCGGCACCCTTGTTGGCAACAACACTCG
ATCGGACACACCCGCCGGGGATAAAGCGGACAGGCGTGATGTTACATGTA
TTAGCGTTGAGCGCTGCTTGCCCCTTCAAACAACGACCCCCCCCAACTAC
ACCCGAAGATTGCAGCCGACCCATCCATTTCGGCGCTCCAACTTCCAAAT
TTAGAGGGGAGTTTCCACCTGTACCAAACGTCACGCAACAGGAGGTCGTT
CTGCACGTCCAACCTTTCGTCTCCTTCGCGCGCATACTCCCCTGAAGACA
CGTTACTGCTGTTTACACATGACATCATTCGTACAAACAAATCTCAAGAC
AAACAAACCGCCTGTTGATTGTGTGATGTACTCCAACAGACGGCATGCAT
GTAACACGGGGATAGTCTACCATTCTCGGGATCCCTCAAGATGGGCACTA
GCGTCTGGTGCGATGCTTCTTCAATCCCACATGTTTTTCCCTTTCTACAC
GGCGACGAGTACTACTGTAGATAGGGCAGCGGGCTAGTGGCCCGCGGGGC
GCGACTCAATACCTTGCAGTGGTTTTTCTGCGATGCTGTTGGACATTTCC
GAATTATTCGAATATTCTTTTCGCATCTTCGAAGACTGGTGCATCCGCTC
GCCGCTGGAGCGTAAAATACTACCGGTTACAGCAATACATGATGCGTAGC
CTATCCCAACGACCAACCGCCGAGGGACACACACTTAAACACATGGCGTG
ACACCCTCGCCCGCCACAGCAGTCACCGCTCATCGGTCGACACCGAACAG
CACTGCTGCCGGTACAGATGAACAGTGTGGTGGACATCAATGCACCATAG
ATCGAGCCCGTCGGGCAGCGCGGCGTTTCGCTTGCTGGAGGCGGCGTTGT
TTGTTGGCTTCCCTCTTCTCCCGCCCTAAAGTTTACGGCGACAAACATCA
TGCCTGTTGCTCTGAGTCTCGTGTGACGACTGTGTCAACAGCAACAACGC
CGCGGCTTCGCTCTCCCTGCAGCAGCAAAAACTCCCATCCACATCTTGCT
TCCACCATCATCGTGAGCTTTTCCGACGAGAAGAAGAGCCCATCGTCAAG
AATCCTTCTTGTGTAGCCGGAGAGCGGGCACCGGGTCGGCTGATCTTTGC
AGGCAGTGTGATAGTTGGCCCCTGTCGTCACACGCCCTGCCAGTGAGCTG
CTGCTGACTAGATGTGTTTGGTTCTACCCTCGCTCGATGTTCACAGACTC
AAGACAGACTGTTTGTAGCCACCAACCCTAACGAGGTCGGTGGTGGTCCC
GGTGCCGGTTCGGCCGAACGAAAGAGCTCGGCGGCATCGGCTGCGGCGAT
GGGGGAGGTGGTTGGCGACGACAGCATGGTCGTGGGCAAGGGCATCATGA
TCAAGGGCGACGTTGACAACTGCGCGGTGAGTTGAGTCTCTACTGGTAAG
TGTACCTGGTCACGACATTTGAAGCTTTCTTTTTATTGTGTGTTTTGTGT
TGTTTTTGGCATTCCTACGAACCAAACCTAGTTTGTATTGTTTGTGTGTG
GTCTTGCGACCAAGGCAGGCTTGCGTGCCGGCAAAGATCGTGACGGACGA
GGCACCCTACAGTATGCACCAAAATCGGGTGACCGTGCACCCACCGCCGG
TGGATGATACGTTCAAAGCAAATCAAGGCGTTTTTTTTTGCTTTTGCTTG
TCGGTCCGCGAGTTCACCCCCGCCCCCCGAAACAGACCCAATTAGGATCA
AGAGTCCGGCTTCCAAGCGCCCATATGGATCTATGGGTTACGCTCGTGCA
CCCTCCCTTCCCCCCACCCTTCATGCCCGTTCGGTTTAGACTCTAATCGT
GGAAGGCTACTTCGAGGGAAACTTTCGGGGGGGGTTCCTAGCGGTGCCAA
AGGGCGGGAAGTACGTGGGGATGGCTGAAGTGCGAAGAGCTGATATCGGC
GGCCGGTTGCACGGAACCCTCAGCGCGAGCACCCTACTCGAGGTATTTTC
TACCGGTTCTCCTCCGGCAGCAGCATGATGGTAGAATAGTCGATACCGCT
TGAAGGGCACCCATTTAGTTTTTTTTGCAAAGTGTCCTCGACGCAGGGAA
GTGTCCTCACCCCCCCCCCCTTTATGCTACGTATGTGTGGGGCACCCTTC
TTCTGAGGTTTATTTTGTCACTAAAGAGCTGAATTGACTTGAGGTGAGTG
TCCTTAAAGCGGGGAAGACTGTAGTAATACCAGAGGTTTGCATGAGATGC
CGCACACCCCGGACCGATACATAGTGAAAGGTCCACGGCTAAGAACGGTG
CCTGAATCAAAAGATTATCAGGTTTCGGAAAGCTGTGGACGAGACCGTTC
GAGCCTCCCGCCGTTTGCGGCACTGTCACTACAAGCCGACCTTTGGAAGT
CGGTCCAGGGGGTATGGTGTCTTGCGTGGCCTATCACACGAAGTGATGTC
CCGTCGGGGTATGTATGGATAGCGGCATGGTTTTGCCACAAACATCAATA
CCGAGAAAACAATCCGTATGATTGGCCACATAGAATACCATACCCCCTGG
ACCGAATTTCATGGTATCTCACATGACATCTATGTATTGCACGGAAGTGT
TGTCCCGTCATGGCATGCATGGATGGCGGCATGCCTCAAGCACGAACATC
CATGCCGAGATTGATTGCATTTAATCGTTTTAAGCATTGATGTTCGTGAT
GAAGCACAGCATCATCCATGCATGCCACAACGGCACATGATGGGTCACGT
AAGATACCATGCCCCATGGACCGACTTGCAAAGTCCGACTTCACTCAGTT
GATGGACAGTGCAGAAAATGGCGGGAGGCGTTGGAACGACATGGTATGCT
CGATGGCGGCGTAAAACGAACGGCTACAAATTGGTGACTATCGTGTTTTG
TCTTCGCCGTCAGATATATCGCGGGAGGGGCTCAACTGTTTGCGATGCTT
AAGGGGTCGCTCCTTTTCCCGTGTAGAAAAAAATCATGTACGACGTCTGA
ACTCACGAATTTGTGGTGTTCTGTTGTGTTGAAATGCATGGTTTCGTACA
TTCTGGTGCCAGTCTTTTTCCCGTTGGGGGTCACGCCGGGAGGAAGGGAA
ACTAATGAAACGTACTACCTCAGCAATTTTTTTCGTAGGCTCTACGCCGA
TCTTCGTTCACTAGCACTGCCGGCAAACGTAGGCCACGATTGACAATTCC
TCACCGCATTGCAGCAAGAGATGCAAATCAACAGATTCGTTGGACTTGGC
TTGCGGGGTCGTAGCGTCCCGAGCAACGTTTACCGTGTCCACGCACGCAG
GTGGAGACGCCAGGTGTTTTGCGCATGGTGTCGTTCGTGCTGCAGCAACA
CCATCATTTTTGTTGTTTAACGTGCTATACAATAGTCATGCTGTGTGCAT
CACCACCAACATGTTCATTCTTTTGGTGTTTCTTTCTGATTTTGTACAAA
TGCGTAAGTGTTGCTCGTGCGGCATGCAACACCACCAAGACGTTCGAAGA
ATTTGATACTTGCATGCAAATGCGTAGGTGCGGGCATCCGGCAAGATCGA
GGGTATGGTGCGCTATAACGATGTCAAGCTCGAGCAGGGGGGCAGCATGG
TCGGCGATATCCAGCAAGGAACGAAAACGTAGCTGGACGGCTTACCACCA
ACTGGTACTTATCGCCGCGTGCGCGATGATGACGGCCTCGCGCCGTAACT
GCTGTATGATGTGCTTCGATTGCAATCGGAGCATGTATGTCCCGCTGCTG
CTGGGGTCTGTTACAGACGGGGCGGTTCTGTAGGTCTTCCTTGTGAGGAT
ACCACACCCTCTGTCAAGCCGTGCACTTGCAAGTAGTACTCTGCTGCTCG
AATCGCTCTTGTGGCGTCCTTGTTACGTCCTGTTCAGTGTACTCGGTTCA
TGTGTCTATTGTGCTCCGTCAGGTGTAACATTCATTTAGGTCGTCTCGAG
AGCCGGTAGAAGCAGATCCGCGGCAGATGAGTGTTCATCGCTGGAAAGGT
TTAGTATTTTTTTTCCGTGTCACTTCGTCTGTATATGTACATTACCTACT
GAATATCTACGGTTGGGTGTTTCAAGAATATTAATCAGTCCCATGTTGTA
CACGGAGCGTACAATATTATAGCCGACGTGGTAGTGTCATTCGTGTTCTT
CGACGTATAAGTAGTGGAGACGTTTAACACTTTGAAGGCGTTACCATGGT
CGTGCACCCTGTCGTCTCGTATTTTGGTTTTTCAGGACCCCCAAAACTTT
CCACCCGACTGCAGGGAGGGTAGTGGAAGGTATTCTATACCAGGGGGCAT
GTTTTCGTTTCGTTCTTTTTGAGAGTGACGTGGTAGGAATGGGATACGAC
AGATGTTGACGGGAATTCTATTGAGAAGGCAAGGCACTATGAGTTTTATC
GCTACTTGCTGGTGTTCTTGTCTTGGAAAACTTTTGGTTAGGCCCGCCTC
GTGGAACACTTTAGGTTTAGCCGACGCTTATACTCCGCGAAACACAAGCA
CTAAATGTGAATCCGACTTTGGCGTAATACACAACAAGGCCTTGCGCGCC
AGCAAAAAGCAAAAAACACCCG
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Coding sequence (CDS) from alignment at Scaffold_98:337923..342894-

>EsuBft1072_7a-0001 ID=EsuBft1072_7a-0001|Name=EsuBft1072_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=648bp|location=Sequence derived from alignment at Scaffold_98:337923..342894- (Ectocarpus subulatus male Bft15b)
ATGCGAAGTAGCAGCAATACCTCCAGCAGGCGAAGCAGAAGCAAAAGCGG
GGGCAGGACCGGGAGCAGCGGGAACCTGGGCGTCATCGCGGCCAAGGCGC
GAGGCGAACAACACACTCGTTCGAGTTCGGTTGTCGACCTGGTTGACATC
CTCGAGAAGAAGGAGCTGTCGGCCGCCGAGGTCATGGTCATTCGACAAAG
CATGGTGCAGACTCAAGACAGACTGTTTGTAGCCACCAACCCTAACGAGG
TCGGTGGTGGTCCCGGTGCCGGTTCGGCCGAACGAAAGAGCTCGGCGGCA
TCGGCTGCGGCGATGGGGGAGGTGGTTGGCGACGACAGCATGGTCGTGGG
CAAGGGCATCATGATCAAGGGCGACGTTGACAACTGCGCGACTCTAATCG
TGGAAGGCTACTTCGAGGGAAACTTTCGGGGGGGGTTCCTAGCGGTGCCA
AAGGGCGGGAAGTACGTGGGGATGGCTGAAGTGCGAAGAGCTGATATCGG
CGGCCGGTTGCACGGAACCCTCAGCGCGAGCACCCTACTCGAGGTGCGGG
CATCCGGCAAGATCGAGGGTATGGTGCGCTATAACGATGTCAAGCTCGAG
CAGGGGGGCAGCATGGTCGGCGATATCCAGCAAGGAACGAAAACGTAG
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