EsuBft1072_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1072_9a-0001
Unique Name	EsuBft1072_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_98	contig	Scaffold_98:316905..324752 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	588596.U9TIH2
ProteomeId	EsuBft1072_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	4751\|Fungi
Length	176
Hectar predicted targeting category	other localisation
Evalue	2.61e-21
EggNOG OGs	29JY0@1\|root,2RT6R@2759\|Eukaryota,39VBJ@33154\|Opisthokonta,3P12S@4751\|Fungi
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_9a	EsuBft1072_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_98 316905..324752 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_9a-0001	EsuBft1072_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_98 316905..317789 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_9a-0001-exon	agat-exon-57124	Ectocarpus subulatus male Bft15b	exon	Scaffold_98 316905..318072 -
EsuBft1072_9a-0001-exon	EsuBft1072_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_98 323977..324556 -
EsuBft1072_9a-0001-exon	agat-exon-57123	Ectocarpus subulatus male Bft15b	exon	Scaffold_98 324737..324752 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_9a-0001-cds	EsuBft1072_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_98 316905..317789 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1072_9a-0001-exon	agat-five_prime_utr-424	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_98 317790..318072 -
EsuBft1072_9a-0001-exon	agat-five_prime_utr-425	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_98 323977..324556 -
EsuBft1072_9a-0001-exon	agat-five_prime_utr-426	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_98 324737..324752 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_98:316905..324752-
coding sequence from alignment at Scaffold_98:316905..324752-

spliced messenger RNA

>EsuBft1072_9a-0001 ID=EsuBft1072_9a-0001|Name=EsuBft1072_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1764bp|location=Sequence derived from alignment at Scaffold_98:316905..324752- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAAAAAAATATATTTTTCCCAGCTAACATTCCACACTCTCTCTAGATCGC
CACAGCATAGGCGAACGATTCCCCCACACTAGCGTACACACATTGCAGGT
CCACCAAACGTATACGGTTCGGGCATTGTTAACAAGATGCCGAACGACAA
CGCACGTAAGAAATATTCATACAATGTGTACGCCCAAACGACTTTCCGAG
GTGCGCCCTTACTCTGCCAAGCTCATACGCGATAAACACACTTAACAGGG
CTGCGGACTATACCGCGCCCGAAACCTGGTACGTGCGTTCCGGTAACCGG
GGCTGCGGAGACTAACAGCCCACCGCACATAGGAACACGCTCGAAAATTA
CTTGGCGCAACTCGTACTACCCTGTACCCGGGCTTCGCGGAAAAAGGACA
CCGGGTACACTTAGCCCAGGCAACTACCTTACGAATGCCCGCGCTAAGAA
TCTGCTCTCCCTCCTACTACCACCCTCAAAAGCACGGGCGGGCGGGTGGG
AAAAACAGAATACGCTGCAGAATACCCCACCGACTGTCGCACGGACAAAA
AACGCCGGACGCCTCGATCCCTTTTCTCGACGCGTTCGGAACACAAGTGC
GGAAAGATCACGAGATTCAAACTGGGGCGGACGACGTGACTACACCGGAC
GACCCGTTGGATCGTTGGGAAGGGCTACCCGGCGGGCGCGTGCGTTGAGA
CTGCGCCAAGAACTACAGGACGCCGTTCCTGGGGCATTCAACCTGTCTGC
CAGCAGTCTGCAAGAAGTCGTGAGGGCTTGGATAGAGTTCGAACCCGAGT
GGGCCGAGGAGGCGAAGAAGAGATACCTGAACAAGGGCACGTACAACACG
TGAAAGTCGAGAAATTCCGCCCCATCGACATGCTGCACAACGACGAGCAC
GGACAGTACTGGTCCTACCACCTCTTCGAGTACGGCAAGAACAAGGAGGG
ATACTGGACCGGGCTCAAGATGCTGGAGCACATGGCAGACGTGCTCGACA
TGTTAACAGTTCTCTACCCTGATCGGGCGCCTGTAGGCCTGTTCGACTGG
TCGTCCTGTCATGACTGCCTGGAGGTCGGCGCACCGTCGGTGAAGAGAAT
GAACTTGGGTGTCGGTGGTGTGAGGAACGGAGAAGAGCTTGCGCCGATGG
ACGCCGTGACCATCCTCGAAGACACCCCGAAGCTCCCAGCCGGCACGGTA
CAGCACTTGACGTTTCGGAGGGGGGACCCACCCCCATTCCACTCCCCGCA
TCTCCGGCCGGCCGAGTATGTCGGAAAGCTGAAAGGAATGCGGCAGGTCT
TGTGGGAGAGGGGGCTCCTGGTCAAAGGCATGACTAAGACCGGGGGCTCA
GGCGAGGAGCAGGACTTAAGGAAGAGCATGGAACACGTTCTAGGAGAGCA
GAAAGACTTCAAGGAAGTTGATTCTAGTCTGGTGCTGTTAATGCAGCGCC
ACGGGGGGGGCTATCTCATGCTTCCAAAGTACCACTGCGAGTGTAGCCTG
ATCGAACTTGTTTGGGGACGAGCGAAGGACTGGACTCGCAAGAATTGCAC
GTATTCGTTGGAATGCTTGCGCAAAAACGTGCCGCTGAGTTTTAGATCAG
AGAAGGATAGGCAGGCTGTTTCAGTGGTCCAGGGCTACTGCAAGAAGGCA
TACACACACGCCCTCATGTACCGCGAGACGCGTGTGGAAGGGCCTGAAGG
CAAGAAGACGTACAAGAAGTACAAGTCACACAGGCGCCCGACCCCGAAGG
AATGGAGACAGTAG

protein sequence of EsuBft1072_9a-0001

>EsuBft1072_9 ID=EsuBft1072_9|Name=EsuBft1072_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=294bp
MLHNDEHGQYWSYHLFEYGKNKEGYWTGLKMLEHMADVLDMLTVLYPDRA
PVGLFDWSSCHDCLEVGAPSVKRMNLGVGGVRNGEELAPMDAVTILEDTP
KLPAGTVQHLTFRRGDPPPFHSPHLRPAEYVGKLKGMRQVLWERGLLVKG
MTKTGGSGEEQDLRKSMEHVLGEQKDFKEVDSSLVLLMQRHGGGYLMLPK
YHCECSLIELVWGRAKDWTRKNCTYSLECLRKNVPLSFRSEKDRQAVSVV
QGYCKKAYTHALMYRETRVEGPEGKKTYKKYKSHRRPTPKEWRQ

mRNA from alignment at Scaffold_98:316905..324752-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1072_9a-0001 ID=EsuBft1072_9a-0001|Name=EsuBft1072_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=7848bp|location=Sequence derived from alignment at Scaffold_98:316905..324752- (Ectocarpus subulatus male Bft15b)
AAAAAAAATATATTTTGTTCAGATGCTTTCGAATAGTTGGATTAAGTACA
TACATGCCCCCGCCTGGCATCAGGGGGGGGGGAATGAGAGAGTGAACACT
CATTCGGGCGAACTTCACGTACGAGCCCGAATCGACCATCAACGAATCTA
GCCAGATGGCGTACCACCAGGCACTCGACACGATTGCCTGCCCCAGTCCC
AGCTAACATTCCACACTCTCTCTAGATCGCCACAGCATAGGCGAACGATT
CCCCCACACTAGCGTACACACATTGCAGGTCCACCAAACGTATACGGTTC
GGGCATTGTTAACAAGATGCCGAACGACAACGCACGTAAGAAATATTCAT
ACAATGTGTACGCCCAAACGACTTTCCGAGGTGCGCCCTTACTCTGCCAA
GCTCATACGCGATAAACACACTTAACAGGGCTGCGGACTATACCGCGCCC
GAAACCTGGTACGTGCGTTCCGGTAACCGGGGCTGCGGAGACTAACAGCC
CACCGCACATAGGAACACGCTCGAAAATTACTTGGCGCAACTCGTACTAC
CCTGTACCCGGGCTTCGCGGAAAAAGGACACCGGGTACACTTAGCCCAGG
CAACTACCTTACGAATGCCCGCGCTAAGAATCTGCTCTCCCTCCTACTAC
CACCCTCAAAAGCACGGGCGGGCGGGTGGGAAAAACAGAATACGCTGCAG
AATACCCCACCGACTGTCGCACGGACAAAAAACGCCGGACGCCTCGATCC
CTTTTCTCGACGCGTTCGGAACACAAGTGACACTCCTCGCTTCCACACAC
ACTTTATTCCGGGCATCCCGTGCGACACTCTGATTGGCTGGGGACTATTC
TTCCGCCTTCACAAAACGCAGATTTCTACGTCTCTGACTCAGTAATCTTT
CGCTTTGTTCAGATGCTTTCGAATAGTTGGATTAAGTACATACATGCCCC
CGCCTGGCATCAGGGGGGGGGGAATGAGAGAGTGAACACTCATTCGGGCG
AACTTCACGTACGAGCCCGAATCGACCATCAACGAATCTAGCCAGATGGC
GTACCACCAGGCACTCGACACGATTGCCTNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNTGTAGTGCTGTACGCAAGGTCCAGCGA
CAGCACTGAGTTGAAATGGCGGAGCGGCTGGATCACGTCTGGAAAGCCAC
GCGGTCGCGACGCCATCGCAGAGGGAATCATCCTCGACAACGTTACTGCT
GCTGACTGGGAGGCCCTTCAAAAAAAGAGCTCATCCGACGCGCCCATGAA
GAGCGCACCACCGCGGGAGCAGTGCGCAGCTAGAACCGCAGCCCCGGCCC
TTGGTTCACTGCAAGAACCTGGTCTTGCAGGTGCGGAAAGATCACGAGAT
TCAAACTGGGGCGGACGACGTGACTACACCGGACGACCCGTTGGATCGTT
GGGAAGGGCTACCCGGCGGGCGCGTGCGTTGAGACTGCGCCAAGAACTAC
AGGACGCCGTTCCTGGGGCATTCAACCTGTCTGCCAGCAGTCTGCAAGAA
GTCGTGAGGGCTTGGATAGAGTTCGAACCCGAGTGGGCCGAGGAGGCGAA
GAAGAGATACCTGAACAAGGGCACGTACAACACGTGAAAGTCGAGAAATT
CCGCCCCATCGACATGCTGCACAACGACGAGCACGGACAGTACTGGTCCT
ACCACCTCTTCGAGTACGGCAAGAACAAGGAGGGATACTGGACCGGGCTC
AAGATGCTGGAGCACATGGCAGACGTGCTCGACATGTTAACAGTTCTCTA
CCCTGATCGGGCGCCTGTAGGCCTGTTCGACTGGTCGTCCTGTCATGACT
GCCTGGAGGTCGGCGCACCGTCGGTGAAGAGAATGAACTTGGGTGTCGGT
GGTGTGAGGAACGGAGAAGAGCTTGCGCCGATGGACGCCGTGACCATCCT
CGAAGACACCCCGAAGCTCCCAGCCGGCACGGTACAGCACTTGACGTTTC
GGAGGGGGGACCCACCCCCATTCCACTCCCCGCATCTCCGGCCGGCCGAG
TATGTCGGAAAGCTGAAAGGAATGCGGCAGGTCTTGTGGGAGAGGGGGCT
CCTGGTCAAAGGCATGACTAAGACCGGGGGCTCAGGCGAGGAGCAGGACT
TAAGGAAGAGCATGGAACACGTTCTAGGAGAGCAGAAAGACTTCAAGGAA
GTTGATTCTAGTCTGGTGCTGTTAATGCAGCGCCACGGGGGGGGCTATCT
CATGCTTCCAAAGTACCACTGCGAGTGTAGCCTGATCGAACTTGTTTGGG
GACGAGCGAAGGACTGGACTCGCAAGAATTGCACGTATTCGTTGGAATGC
TTGCGCAAAAACGTGCCGCTGAGTTTTAGATCAGAGAAGGATAGGCAGGC
TGTTTCAGTGGTCCAGGGCTACTGCAAGAAGGCATACACACACGCCCTCA
TGTACCGCGAGACGCGTGTGGAAGGGCCTGAAGGCAAGAAGACGTACAAG
AAGTACAAGTCACACAGGCGCCCGACCCCGAAGGAATGGAGACAGTAG

Coding sequence (CDS) from alignment at Scaffold_98:316905..324752-

>EsuBft1072_9a-0001 ID=EsuBft1072_9a-0001|Name=EsuBft1072_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=885bp|location=Sequence derived from alignment at Scaffold_98:316905..324752- (Ectocarpus subulatus male Bft15b)
ATGCTGCACAACGACGAGCACGGACAGTACTGGTCCTACCACCTCTTCGA
GTACGGCAAGAACAAGGAGGGATACTGGACCGGGCTCAAGATGCTGGAGC
ACATGGCAGACGTGCTCGACATGTTAACAGTTCTCTACCCTGATCGGGCG
CCTGTAGGCCTGTTCGACTGGTCGTCCTGTCATGACTGCCTGGAGGTCGG
CGCACCGTCGGTGAAGAGAATGAACTTGGGTGTCGGTGGTGTGAGGAACG
GAGAAGAGCTTGCGCCGATGGACGCCGTGACCATCCTCGAAGACACCCCG
AAGCTCCCAGCCGGCACGGTACAGCACTTGACGTTTCGGAGGGGGGACCC
ACCCCCATTCCACTCCCCGCATCTCCGGCCGGCCGAGTATGTCGGAAAGC
TGAAAGGAATGCGGCAGGTCTTGTGGGAGAGGGGGCTCCTGGTCAAAGGC
ATGACTAAGACCGGGGGCTCAGGCGAGGAGCAGGACTTAAGGAAGAGCAT
GGAACACGTTCTAGGAGAGCAGAAAGACTTCAAGGAAGTTGATTCTAGTC
TGGTGCTGTTAATGCAGCGCCACGGGGGGGGCTATCTCATGCTTCCAAAG
TACCACTGCGAGTGTAGCCTGATCGAACTTGTTTGGGGACGAGCGAAGGA
CTGGACTCGCAAGAATTGCACGTATTCGTTGGAATGCTTGCGCAAAAACG
TGCCGCTGAGTTTTAGATCAGAGAAGGATAGGCAGGCTGTTTCAGTGGTC
CAGGGCTACTGCAAGAAGGCATACACACACGCCCTCATGTACCGCGAGAC
GCGTGTGGAAGGGCCTGAAGGCAAGAAGACGTACAAGAAGTACAAGTCAC
ACAGGCGCCCGACCCCGAAGGAATGGAGACAGTAG