EsuBft3551_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3551_3a-0001
Unique Name	EsuBft3551_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_94	contig	Scaffold_94:4403..7181 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft3551_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	277
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3551_3a	EsuBft3551_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_94 4403..7181 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3551_3a-0001-exon	EsuBft3551_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 4403..7181 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3551_3a-0001-exon	agat-three_prime_utr-13752	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 4403..6912 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3551_3a-0001-cds	EsuBft3551_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_94 6913..7104 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3551_3a-0001-exon	agat-five_prime_utr-8723	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_94 7105..7181 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3551_3a-0001	EsuBft3551_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_94 6913..7104 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_94:4403..7181-
coding sequence from alignment at Scaffold_94:4403..7181-

spliced messenger RNA

>EsuBft3551_3a-0001 ID=EsuBft3551_3a-0001|Name=EsuBft3551_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2779bp|location=Sequence derived from alignment at Scaffold_94:4403..7181- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACAGCATATAGGGACATCTCCCCTGTGGGTAACAGGCTCAACAAATCAGT
TTGGTAGCTGTCTTGTGTGTCTCATATATGTTATGTTGGGAAGGTGCAGA
CGAAAGGTGTTGGGTACTGTTGGGTAGTCGGGCGTTTTGTGTGTCGCACC
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NGTCATTATTTATAAACAGGCGTTCTTATTTTGCACATAGACATGTAACG
ATATTTGAACATAACACAACAACACTACTCCAGGAATTGCTCGACAAAGA
AACGGGACACTACCCAGTAAAGTAAAAGATAAACGCACGCAGGCTAATCT
ACCAAAAATTCATTCGTATCTACTCGATTCCAAATACCCAACTCCACTTT
CTTCCAGTATGAATTCCGCACCATAGGTGNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGGCTGTGGCAGCTTGGA
AAAATCGAATGTCAGTACATCTAATAGCAAATCGGCACATTCGACAGTGT
AACGTCGACATCTTACACCAAGTAGATAACACTGTTTCCCAATGTGGGAA
TGCCCGATATTGCTTCAGCGTAGCCATATGTTGGCGCTTATTATACATAC
CGATACAAGTCTTACCAGGAATGTCTTGCCCTATTTGCATATCCAGAAAG
TGTGCTGATTCCCCACACTGTTATTGGGTAACGCGAACGGGGTTGTCTAT
CTCATCACCATTCGAATCTAACACCATCGTTGGGTACATACCACCATATT
GATTACCCTCCTTATATATAATATCTTCAAATGTTGGTCCAGTCTGGTTA
CCATATCGCACCGTAAAAATGTCATCTATATACCGTTTTGTACCAATGCT
GTATTGCTCAATAAATTCAAATGGATACAACGATGTAGTCCCAGCGTGTG
TAGCAGTTAAATACTCATCCACCATTTCCTTCAAAAAATCGAATTCATGC
ATAAACGCAAAAATATTCGCTAGTTCGGGAGCTGGTGCCGTTCCCATAAA
GATACCAGAGGCTTGTTGGTACATGCCGTTCCCAAAATGTACAAATCCTT
CGTCCAAAATAAAATCTATCCATTTACAGACCCGTTCCCATCCAATGTAA
TTCGCTCGACCTCTGCTAGATGTTACGTTGCTCGGGTTTTCCTTCGACCA
CTCGATGTCTCTAACAAATGGTGTCTTATTATCAGGCCCAATACCCCATC
TCAACTTCATCGACTTAAACCCATGTCTCTCAGCTTGGTGTTCAAACGAC
AATTTCAAAGCTTCCCTCAATTTTTCCTTCAATGGTACTACAGGGATATT
AGGGTACATACCAACGAAGTCAAATGTTTGGAAGACATGCGCATCAGTAC
ATCCCTCCATTTGTGCTCGAATATCGATATCCTGTGCTACTTCTAGAAGA
CTTTCCCCGCTAGAGGTAATCCAACATTCCTTGGCAGCAATACCAACTTT
TGCGCATTCTTCACGCCAGATCGTGTGTAAACAAGGCTGGATACCAACCA
GGACTGCGTTGACTACCTTGGCCACTCCTTCTGTGATCGTACCACAACAA
GCCGTAATTCCACGTGTCGCTACCAACGG

protein sequence of EsuBft3551_3a-0001

>EsuBft3551_3 ID=EsuBft3551_3|Name=EsuBft3551_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=64bp
MLCWEGADERCWVLLGSRAFCVSHPXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXX

mRNA from alignment at Scaffold_94:4403..7181-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3551_3a-0001 ID=EsuBft3551_3a-0001|Name=EsuBft3551_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2779bp|location=Sequence derived from alignment at Scaffold_94:4403..7181- (Ectocarpus subulatus male Bft15b)
ACAGCATATAGGGACATCTCCCCTGTGGGTAACAGGCTCAACAAATCAGT
TTGGTAGCTGTCTTGTGTGTCTCATATATGTTATGTTGGGAAGGTGCAGA
CGAAAGGTGTTGGGTACTGTTGGGTAGTCGGGCGTTTTGTGTGTCGCACC
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NGTCATTATTTATAAACAGGCGTTCTTATTTTGCACATAGACATGTAACG
ATATTTGAACATAACACAACAACACTACTCCAGGAATTGCTCGACAAAGA
AACGGGACACTACCCAGTAAAGTAAAAGATAAACGCACGCAGGCTAATCT
ACCAAAAATTCATTCGTATCTACTCGATTCCAAATACCCAACTCCACTTT
CTTCCAGTATGAATTCCGCACCATAGGTGNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGGCTGTGGCAGCTTGGA
AAAATCGAATGTCAGTACATCTAATAGCAAATCGGCACATTCGACAGTGT
AACGTCGACATCTTACACCAAGTAGATAACACTGTTTCCCAATGTGGGAA
TGCCCGATATTGCTTCAGCGTAGCCATATGTTGGCGCTTATTATACATAC
CGATACAAGTCTTACCAGGAATGTCTTGCCCTATTTGCATATCCAGAAAG
TGTGCTGATTCCCCACACTGTTATTGGGTAACGCGAACGGGGTTGTCTAT
CTCATCACCATTCGAATCTAACACCATCGTTGGGTACATACCACCATATT
GATTACCCTCCTTATATATAATATCTTCAAATGTTGGTCCAGTCTGGTTA
CCATATCGCACCGTAAAAATGTCATCTATATACCGTTTTGTACCAATGCT
GTATTGCTCAATAAATTCAAATGGATACAACGATGTAGTCCCAGCGTGTG
TAGCAGTTAAATACTCATCCACCATTTCCTTCAAAAAATCGAATTCATGC
ATAAACGCAAAAATATTCGCTAGTTCGGGAGCTGGTGCCGTTCCCATAAA
GATACCAGAGGCTTGTTGGTACATGCCGTTCCCAAAATGTACAAATCCTT
CGTCCAAAATAAAATCTATCCATTTACAGACCCGTTCCCATCCAATGTAA
TTCGCTCGACCTCTGCTAGATGTTACGTTGCTCGGGTTTTCCTTCGACCA
CTCGATGTCTCTAACAAATGGTGTCTTATTATCAGGCCCAATACCCCATC
TCAACTTCATCGACTTAAACCCATGTCTCTCAGCTTGGTGTTCAAACGAC
AATTTCAAAGCTTCCCTCAATTTTTCCTTCAATGGTACTACAGGGATATT
AGGGTACATACCAACGAAGTCAAATGTTTGGAAGACATGCGCATCAGTAC
ATCCCTCCATTTGTGCTCGAATATCGATATCCTGTGCTACTTCTAGAAGA
CTTTCCCCGCTAGAGGTAATCCAACATTCCTTGGCAGCAATACCAACTTT
TGCGCATTCTTCACGCCAGATCGTGTGTAAACAAGGCTGGATACCAACCA
GGACTGCGTTGACTACCTTGGCCACTCCTTCTGTGATCGTACCACAACAA
GCCGTAATTCCACGTGTCGCTACCAACGG

Coding sequence (CDS) from alignment at Scaffold_94:4403..7181-

>EsuBft3551_3a-0001 ID=EsuBft3551_3a-0001|Name=EsuBft3551_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=192bp|location=Sequence derived from alignment at Scaffold_94:4403..7181- (Ectocarpus subulatus male Bft15b)
ATGTTATGTTGGGAAGGTGCAGACGAAAGGTGTTGGGTACTGTTGGGTAG
TCGGGCGTTTTGTGTGTCGCACCCTNNNNNNNNNNNNNNNNNNNNNNNNN
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