EsuBft920_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft920_4a-0001
Unique Name	EsuBft920_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_91	contig	Scaffold_91:622234..625347 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft920_4
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-noTM
Protein domains	TRANSMEMBRANE
Protein domains	TMhelix
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	168
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-01_002700.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft920_4a	EsuBft920_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_91 622234..625347 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_4a-0001-exon	agat-exon-48724	Ectocarpus subulatus male Bft15b	exon	Scaffold_91 622234..623402 -
EsuBft920_4a-0001-exon	EsuBft920_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_91 624836..625347 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_4a-0001-exon	agat-three_prime_utr-23075	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_91 622234..623297 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_4a-0001-cds	EsuBft920_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_91 623298..623402 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_4a-0001-exon	agat-five_prime_utr-15007	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_91 625298..625347 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft920_4a-0001	EsuBft920_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_91 623298..625297 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_91:622234..625347-
coding sequence from alignment at Scaffold_91:622234..625347-

spliced messenger RNA

>EsuBft920_4a-0001 ID=EsuBft920_4a-0001|Name=EsuBft920_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1681bp|location=Sequence derived from alignment at Scaffold_91:622234..625347- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCCGTGTCGAGCACATTGTCTGCTGCCAATCACCCTATCGCTGCC
ATGATGCACCCTGCGCCTGTGTTCATGGCGGTCCTCGCGGCCACCCGCTT
CTCGGGGGCCATCTGCTTCACGATGGCGACGCCCCGTTCCTCTCCGTCGC
GTCATATTCGTCATGTTTCGTCAGCGACGACTGATAGGTTAGCTGCCTCG
TCACCGCCTTCATCATCATCGTACTCGACAACGCACACCGACAGCAGCAT
GTTCGCGCCGATGGAAGCTCGAGCGGTGCCGTCACTCGACCGGTGGCAAT
CGCGACTCCGAGCATCGGGAGAGACGTTGGGAGAAGAGGGCATCGCGAAC
CCTCCTAAGGAATCAGAAGCGACCAGCAGCGGCGGCGCAACTAACATCGA
GTTAGGCGCCGGCGGAAGTGGGGTCGACTTGTCGAAGGGGATAGCGTTCG
AGGCCCCGAAGCCAAAGGCGTTGGAACCGGAGAAGGACGAGGAGGAGTCT
GATTCGAAAAAGGTTCGCGTGATCATCTACACGGTGCTATCCCTCGTACC
GTTCGTGCTGCTTCTGCCCTTCTTGGGGGGCAGGGAGCTTATGCCCTTAG
ATCCCAGCCAAATGTAGCATGGTGCAAGTGCCCCTCCCCCCCCGGCCCCC
CTTGGTACCGACATGCTATAACGACCTAGCTGTACTTGTCGATAGATTGG
AGGCAGATTGTTCGGGTTCGATCGTGGTCATGATGGAAGTCTGGTCGTAA
ACAGCTTTTGGTGTTTTTTGCTGTGTGAGGGGGGGGTTGCACTCATAGTC
GTGCATCCCGTAGTCGTTAGACCATTGACCGCATCCCTACAAAGCCGGGA
CGGAGCACGCCGGGTTCTCACCCGACCAGGCTCTCACATAATCAAGCTCG
AAGCGCCGTGAGATATTCGGCGAGTCGCATGAAGGGCTGTGTGAGGGGAG
ATTTTTTGGCTCCGGTAGAGCTAGTCAAGGGTTATTTGATTGCCGATTGC
TTGGGTTTGCAAAGAGTAGATAGAAAATACCGTTATGTCCTCTGAATTGT
CCCTCCTCCCCCCAAATTTGGCCGAAATAGGCACAAAAATGCTGAATTTC
CCGGGGAATATTTTTTCGTTTTTTTCAAGATCTCCCCCCTACCGTAGAGA
TATCACCGGGGACATCTTTTTGTGCGCATAAGAAACGTTTCCCCGGGGGA
GGAGTGAATGGAAATCGGTTGGTGTGTTTTGTTGAATGCCGTCTGAATAA
GGTCCGAGGTTCACGGGCTCCGTCCGCGCGTTTCAGCAAACATCGTTCTC
TGAATCGGTGCAACCGAACCAAAATTCAAGCAGTCGGTCCTATCCAACCA
AGCCAAAGCCATTTTTTTTACGGTTTCAACAGAGTACCTCGTATTGTTCA
ATTGATGTCACGTGTGTGTGTTTTCTGTACATCTCCTCGGCACAATTTGT
CGCCGGGGTGTTTTTTTTGTTGTATATGTCCCCCGTACCGTACAGATAGC
CCCTGGGATATCATTGTGGGCATAACAGATAGACGTCCCCCGCGGACAAT
CCAGAGGATAGTACGGTAACTACACACGCTGCGCATTGTGATGCTGCTGC
TATTTTCATGGGACTGAGAAGCACCCTCCACAAGCCGCCATGTCCACCAC
CAGGCCTTATCCGACATCACGTGTGCGTCGT

protein sequence of EsuBft920_4a-0001

>EsuBft920_4 ID=EsuBft920_4|Name=EsuBft920_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=188bp
MMHPAPVFMAVLAATRFSGAICFTMATPRSSPSRHIRHVSSATTDRLAAS
SPPSSSSYSTTHTDSSMFAPMEARAVPSLDRWQSRLRASGETLGEEGIAN
PPKESEATSSGGATNIELGAGGSGVDLSKGIAFEAPKPKALEPEKDEEES
DSKKVRVIIYTVLSLVPFVLLLPFLGGRELMPLDPSQM

mRNA from alignment at Scaffold_91:622234..625347-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft920_4a-0001 ID=EsuBft920_4a-0001|Name=EsuBft920_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3114bp|location=Sequence derived from alignment at Scaffold_91:622234..625347- (Ectocarpus subulatus male Bft15b)
ATGCACCCGTGTCGAGCACATTGTCTGCTGCCAATCACCCTATCGCTGCC
ATGATGCACCCTGCGCCTGTGTTCATGGCGGTCCTCGCGGCCACCCGCTT
CTCGGGGGCCATCTGCTTCACGATGGCGACGCCCCGTTCCTCTCCGTCGC
GTCATATTCGTCATGTTTCGTCAGCGACGACTGATAGGTTAGCTGCCTCG
TCACCGCCTTCATCATCATCGTACTCGACAACGCACACCGACAGCAGCAT
GTTCGCGCCGATGGAAGCTCGAGCGGTGCCGTCACTCGACCGGTGGCAAT
CGCGACTCCGAGCATCGGGAGAGACGTTGGGAGAAGAGGGCATCGCGAAC
CCTCCTAAGGAATCAGAAGCGACCAGCAGCGGCGGCGCAACTAACATCGA
GTTAGGCGCCGGCGGAAGTGGGGTCGACTTGTCGAAGGGGATAGCGTTCG
AGGCCCCGAAGCCAAAGGCGTTGGAACCGGAGAAGGACGAGGAGGAGTCT
GATTCGAAAAAGGTAGGTCTGTGGTCTTTGGATAGCGTCGGCGGCCGCGG
CGGCGGCGGGTCGCTCGCCGCCGCTGCCGCCCTCTGCGGTAATGATGACA
GTCCCGCGTTCCTGACTTGCCCATGGTGCGGCAGGGATGATGTGCCGTAT
GCGTCGATTGCCTGGCATGGTGGTGGTGCCGGGGGCTCGACGCCGCGATC
GGCAGGCTCGGGGCTGTCGTCAAGTGGCGTCTCGAGGCAAGCCAATCGTG
TTTCTTCTTTCGCACGGAGAGAAAGATAAAGATGTACCCGAAACCGTCTG
TCTCATCTCTCCATTTTGCTCGCCCACTGCTGTTGTTCCCTGCTGGTCCT
GACAGACACTTCGATCTCTGCTCCTGACTCGACAGGCAGTGGTATTACCA
TGATCTTCTCTCGAAAGCTAGAAATGTGGGATGATTGACCTCCTGGCGGT
ACATTCGTTCCTACCAAAGCATAAAACACGATATATACGTTCCTACCATC
TGGAACAGTTTGTGCCGAGGTTGTTAAAACGCCAGGTCTGTTTTCGGTCT
GTTAGTGACTCTAGGTTTAACCGGTAGCGAAGGCTAGGACACACCGTGGC
TGCCCCAACCCAACCCGACCCAACCTAACCCTAACCCAAACCGTAAACCT
AACCCTCACCCACGGCCAACGCACGGCCTAGCGGCCGCGTTCTCGGAATG
CGGAACGGTGAGAGAGATCTGGAGAGGGTGAAGGTTAGGAACCAACGCCT
GGCCGATCAGACGGCGTGAAACAGCTTAGACAGGAAGAGTCTCTGACAGA
GTGTAAAAACTGCTGCTACAACACACACGTACGCATGCTTTTTTGTTGTA
TTTGTAGTTGCCGTGGACCAATTACCGGACATGAAAAGCGGTTGGCATCC
TCGATTAAGAACTGCACACCGCACCCATAGTTTCTGGTATTCAAGAACGC
TTGAGGTTTCCTCATGTAATATCTTTGGAATCCGGGCCAGCCGTTGTCCA
AGAATCTTGGTCGGTTTGATCCAAGGATCCGGTGTCGCAAGGCACGGGTG
AGGGCGAACCCTTCGCAATGCAAATAATTGAAGGCGAACCGCCGCAAGCA
GCACCCGGACCGTGAATGCGCCCTGTGGAGCCGAGCTCGTCGGTTCGACA
TTCAACATCGAACTGCGGTCGCCAGTCACGCATTCATGCAGCTTGTCAGT
CAGTGGAGACGGGCGTCCGACCGCACAGCCTAACGAGTACCACACGCGAC
AGTTTTCTTATCGCATCGCACAACCCTCTTACAAGAGACCCCTGCAACTG
CTGTCGCTTGAAGCGAAACAGCCCTTTCCCTTCGCTTCGCATGCGTTGAA
TCGTCTTCGTTCAGCAGCCCCGCCTCCTCCTCCCTTTGCTGTGCCTGCTG
TCTGCTGTTCGTTGTTTTCGTCCGCGCCTTTGTGCTTGACCGCAGGTTCG
CGTGATCATCTACACGGTGCTATCCCTCGTACCGTTCGTGCTGCTTCTGC
CCTTCTTGGGGGGCAGGGAGCTTATGCCCTTAGATCCCAGCCAAATGTAG
CATGGTGCAAGTGCCCCTCCCCCCCCGGCCCCCCTTGGTACCGACATGCT
ATAACGACCTAGCTGTACTTGTCGATAGATTGGAGGCAGATTGTTCGGGT
TCGATCGTGGTCATGATGGAAGTCTGGTCGTAAACAGCTTTTGGTGTTTT
TTGCTGTGTGAGGGGGGGGTTGCACTCATAGTCGTGCATCCCGTAGTCGT
TAGACCATTGACCGCATCCCTACAAAGCCGGGACGGAGCACGCCGGGTTC
TCACCCGACCAGGCTCTCACATAATCAAGCTCGAAGCGCCGTGAGATATT
CGGCGAGTCGCATGAAGGGCTGTGTGAGGGGAGATTTTTTGGCTCCGGTA
GAGCTAGTCAAGGGTTATTTGATTGCCGATTGCTTGGGTTTGCAAAGAGT
AGATAGAAAATACCGTTATGTCCTCTGAATTGTCCCTCCTCCCCCCAAAT
TTGGCCGAAATAGGCACAAAAATGCTGAATTTCCCGGGGAATATTTTTTC
GTTTTTTTCAAGATCTCCCCCCTACCGTAGAGATATCACCGGGGACATCT
TTTTGTGCGCATAAGAAACGTTTCCCCGGGGGAGGAGTGAATGGAAATCG
GTTGGTGTGTTTTGTTGAATGCCGTCTGAATAAGGTCCGAGGTTCACGGG
CTCCGTCCGCGCGTTTCAGCAAACATCGTTCTCTGAATCGGTGCAACCGA
ACCAAAATTCAAGCAGTCGGTCCTATCCAACCAAGCCAAAGCCATTTTTT
TTACGGTTTCAACAGAGTACCTCGTATTGTTCAATTGATGTCACGTGTGT
GTGTTTTCTGTACATCTCCTCGGCACAATTTGTCGCCGGGGTGTTTTTTT
TGTTGTATATGTCCCCCGTACCGTACAGATAGCCCCTGGGATATCATTGT
GGGCATAACAGATAGACGTCCCCCGCGGACAATCCAGAGGATAGTACGGT
AACTACACACGCTGCGCATTGTGATGCTGCTGCTATTTTCATGGGACTGA
GAAGCACCCTCCACAAGCCGCCATGTCCACCACCAGGCCTTATCCGACAT
CACGTGTGCGTCGT

Coding sequence (CDS) from alignment at Scaffold_91:622234..625347-

>EsuBft920_4a-0001 ID=EsuBft920_4a-0001|Name=EsuBft920_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=567bp|location=Sequence derived from alignment at Scaffold_91:622234..625347- (Ectocarpus subulatus male Bft15b)
ATGATGCACCCTGCGCCTGTGTTCATGGCGGTCCTCGCGGCCACCCGCTT
CTCGGGGGCCATCTGCTTCACGATGGCGACGCCCCGTTCCTCTCCGTCGC
GTCATATTCGTCATGTTTCGTCAGCGACGACTGATAGGTTAGCTGCCTCG
TCACCGCCTTCATCATCATCGTACTCGACAACGCACACCGACAGCAGCAT
GTTCGCGCCGATGGAAGCTCGAGCGGTGCCGTCACTCGACCGGTGGCAAT
CGCGACTCCGAGCATCGGGAGAGACGTTGGGAGAAGAGGGCATCGCGAAC
CCTCCTAAGGAATCAGAAGCGACCAGCAGCGGCGGCGCAACTAACATCGA
GTTAGGCGCCGGCGGAAGTGGGGTCGACTTGTCGAAGGGGATAGCGTTCG
AGGCCCCGAAGCCAAAGGCGTTGGAACCGGAGAAGGACGAGGAGGAGTCT
GATTCGAAAAAGGTTCGCGTGATCATCTACACGGTGCTATCCCTCGTACC
GTTCGTGCTGCTTCTGCCCTTCTTGGGGGGCAGGGAGCTTATGCCCTTAG
ATCCCAGCCAAATGTAG