EsuBft920_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft920_15a-0001
Unique NameEsuBft920_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_91contigScaffold_91:535023..538954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FVY5
ProteomeIdEsuBft920_15
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length122
Hectar predicted targeting categoryother localisation
Evalue9.38e-28
EggNOG OGs2CMHW@1|root,2QQDD@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameCCDC65
GOsGO:0000226,GO:0001578,GO:0003352,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0032879,GO:0032886,GO:0034622,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0051270,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Descriptionregulation of cilium movement
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft920_15aEsuBft920_15aEctocarpus subulatus male Bft15bgeneScaffold_91 535023..538954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_15a-0001EsuBft920_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_91 535573..538927 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_15a-0001-exonEsuBft920_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_91 535023..535200 +
EsuBft920_15a-0001-exonagat-exon-48752Ectocarpus subulatus male Bft15bexonScaffold_91 535461..535678 +
EsuBft920_15a-0001-exonagat-exon-48751Ectocarpus subulatus male Bft15bexonScaffold_91 536326..536829 +
EsuBft920_15a-0001-exonagat-exon-48750Ectocarpus subulatus male Bft15bexonScaffold_91 538632..538954 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_15a-0001-exonagat-five_prime_utr-15003Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_91 535023..535200 +
EsuBft920_15a-0001-exonagat-five_prime_utr-15004Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_91 535461..535572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_15a-0001-cdsEsuBft920_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_91 535573..535678 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft920_15a-0001-exonagat-three_prime_utr-23072Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_91 538928..538954 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft920_15a-0001 ID=EsuBft920_15a-0001|Name=EsuBft920_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1223bp|location=Sequence derived from alignment at Scaffold_91:535023..538954+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGCAGTCACGAATGCGGGCAAAGCAGCAGAGTCTACTATAGTTGCAG
ATGGGTCGTATGGCAACCGCATGGCATACGCTGCAGACGCTTCTTCCTCT
CTAGCAAAGAGCAGTCCATCTTGTAGGGTTGCGCCACGCTCGTCGTGGAG
GATTTGTTGCTTCAGAGAAACAGCATGTCATTGGTTGAAAACAAGTTGAA
GCTCAGGCTCTCTACTACAGACACGCCAGTGCGCTTCACACACATCGTCG
TTTTTCCACCATTATCATCCTCCTGAAAGAACTAAGATTGATGCTACCGA
TAAGCTTCCACTTCGAGCAGTCGACCATCAACTACAACGACATACTTGCT
ACTGGCGGGGATCTCTTGCAGGTCGTACATGTGCCGGCTGCTGTTGGCCC
ACGTCCACGAAGAGGTCGCGGGGGGATGAGGCTTGGCTCCAGCCACCGCC
ACCATGACCGGTGTGGTGCTGCTGCCCTTTTATCCTCGCCCATCGCCCGC
CACCGGGGCCGGGCCCGGCGGCGGTCTACCCCCTCGCTGGCTATCGCCGC
CACCGCGGCTGCCGCCGCTCGAGCGGCGTTCCTCAGCGCCCTCCCTCGAA
CGCGCGCGCCGCAGTTGCTGCTGGAAACGACACTGCTCGTTGGTGGGAAG
CTCGGACTGGTGGTAGCGGCAAAATCCGCTGAGGTCGTCGTTGAACACGT
CACCGTTCTTCTTCTCTCCGTCTCGATCTGGGCCGCCAGCTGCTGCGTGA
CCGCCGTCTTGACCCCCGGATGCCCCCCCACTTCCCCCGCCGCTCCGGCC
CATGCCGGACGCGGCGAGAGCGAGCTCCACCTCGCGCCTCTCCCCCTTGC
TCCTCTCGCGCTCCATCTCCACGTGGGTGTCCCTCACCACAGTCTCAAGG
GACTGCGGCAAGAACATAACGAAGACTATCTCTCCCCTCCCGTCCGCCCA
CGCGCGTGGTATCAATGCATTTGCATGTGGTCGCCCTATTCTGCGCCACC
TCAGTATCTGGATGGGATTAGCGTGCCGGAAGACGTGGTTTCGACTCCTA
ACCCTCTGCTCGTGGTGAACGGCAGGGTCAACATGGCCGCGCCGGATGTA
GGCGCCGGGGGGGGCGGGGAGACTCGTCAGATTGCGGCCATTGAGGCCAA
CCACATGGTTTCCACCGGAAGGGTCAATACTCGCGTCGGCCTGTAAAGTT
GTTGTTGCTACGGCAAACGCCTA
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protein sequence of EsuBft920_15a-0001

>EsuBft920_15 ID=EsuBft920_15|Name=EsuBft920_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=301bp
MLPISFHFEQSTINYNDILATGGDLLQVVHVPAAVGPRPRRGRGGMRLGS
SHRHHDRCGAAALLSSPIARHRGRARRRSTPSLAIAATAAAAARAAFLSA
LPRTRAPQLLLETTLLVGGKLGLVVAAKSAEVVVEHVTVLLLSVSIWAAS
CCVTAVLTPGCPPTSPAAPAHAGRGESELHLAPLPLAPLALHLHVGVPHH
SLKGLRQEHNEDYLSPPVRPRAWYQCICMWSPYSAPPQYLDGISVPEDVV
STPNPLLVVNGRVNMAAPDVGAGGGGETRQIAAIEANHMVSTGRVNTRVG
L
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mRNA from alignment at Scaffold_91:535023..538954+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft920_15a-0001 ID=EsuBft920_15a-0001|Name=EsuBft920_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3932bp|location=Sequence derived from alignment at Scaffold_91:535023..538954+ (Ectocarpus subulatus male Bft15b)
GGGGGCAGTCACGAATGCGGGCAAAGCAGCAGAGTCTACTATAGTTGCAG
ATGGGTCGTATGGCAACCGCATGGCATACGCTGCAGACGCTTCTTCCTCT
CTAGCAAAGAGCAGTCCATCTTGTAGGGTTGCGCCACGCTCGTCGTGGAG
GATTTGTTGCTTCAGAGAAACAGCATGTGTTTGTGGTACTTTGGATACGT
GTCCGATCTACTGCCCTGTATGCGCCTGATGGGAGTTACGTGGATGGGTA
TGAAGTACATGGGGGGTCGGAGAAGACCCCCGGTGCTAGAGAGAGAAAGA
GCGCACTAGCTCACTTGCCTGAGGGGCTTGCGTGACGAGAAATAGAGATG
GTCCTGTTTTTCATCTGCTGTTCCTGGGATAACGTAGTACCCAGTCTCAA
CATCACAGACCGCTGAGGGCGGCAGTGCACACAAACAGCATTGGTTGAAA
ACAAGTTGAAGCTCAGGCTCTCTACTACAGACACGCCAGTGCGCTTCACA
CACATCGTCGTTTTTCCACCATTATCATCCTCCTGAAAGAACTAAGATTG
ATGCTACCGATAAGCTTCCACTTCGAGCAGTCGACCATCAACTACAACGA
CATACTTGCTACTGGCGGGGATCTCTTGCAGGTCGTACATGTGCCGGCTG
CTGTTGGTAAAACCTTTGCTGGCTCCTGAGTCAGCTACCCATCTCTCGCT
ACCAGGCGATCCGTCACTAGATTCCACACTCAGCAAAGACGAAACAGACG
CAGCAGACCTACTTCAATCGTCACTCCTATCCTACCAAAAAATCTTCGGG
GTGAGAGTTGCCTAGAGGCACCGATTGTGCCTTGCAGAGGTGGAGGTAGC
CCGAAGATGGAGACGCGCCAGGAGAAGGAGTAGAGGACGATGAGGAAGCG
GTGCTGCTGCTGCTCGCGGGGGGGGGCTGACGTGGCTGCCCGGATAACGA
ATCTTCTCCAGCGGGAGGGTAGTAGACGTAGTGCACGCCGCCGTCAGATG
ACCGGCTGTCATCGTACCCTGAGGAGTATATATAGTTGTAGCTGTCCCCA
CTGCAGGCGTAGTGAGCGTACGCGGCGTCGTGGTAGCCGCCGTCGTAGTA
GTATCCGTCATCGTAGTCGCCGTAATCTTCGTAGTAGCCACCATCAGCGT
GGGCGTAGTACACAACGTATGCCTGCTCTCTTGCGTGGCCAGAACGCGCG
TGCCCCGGGCCTCTCCCTGCCCGCTCTCTTTCGGCACGACCGTCGCTGCT
GTGGCGTCCCGCGGGCCCACGACCCCCCGGGTGACGCCCCAGACGACCAC
CAGGCCCACGTCCACGAAGAGGTCGCGGGGGGATGAGGCTTGGCTCCAGC
CACCGCCACCATGACCGGTGTGGTGCTGCTGCCCTTTTATCCTCGCCCAT
CGCCCGCCACCGGGGCCGGGCCCGGCGGCGGTCTACCCCCTCGCTGGCTA
TCGCCGCCACCGCGGCTGCCGCCGCTCGAGCGGCGTTCCTCAGCGCCCTC
CCTCGAACGCGCGCGCCGCAGTTGCTGCTGGAAACGACACTGCTCGTTGG
TGGGAAGCTCGGACTGGTGGTAGCGGCAAAATCCGCTGAGGTCGTCGTTG
AACACGTCACCGTTCTTCTTCTCTCCGTCTCGATCTGGGCCGCCAGCTGC
TGCGTGACCGCCGTCTTGACCCCCGGATGCCCCCCCACTTCCCCCGCCGC
TCCGGCCCATGCCGGACGCGGCGAGAGCGAGCTCCACCTCGCGCCTCTCC
CCCTTGCTCCTCTCGCGCTCCATCTCCACGTGGGTGTCCCTCACCACAGT
CTCAAGGGTACGTAACGTCAGGACATCATGGGCAAGCACATTCCTTTTTG
CACGGCATACAACGAAGAGGAAAGGCCACAACAAACGTCTTCGTTGGCAT
CTGTTTTATCCTTAATCGTGCCTACAGATGCTAGACGCAGGCGAAGGGCT
TCTGAGCGGACAATATAGTCCTGTGGACTCTCGGACTCTTTCATCTCCAA
CTCCTTCCAGTCCTGCTCCAACCTCGACTTTTCTGACTGCTTCTTCTCCC
GATAGAATTCTGTCACGATTTTCCGGCCTCTTTGTGGACTATCACACGCC
AGAATCAAGCTCTGAATCGGGGGGTACAAGACCTTGCTGATGAGAATATC
CCATAGCTTGAAAGACTTGTCTACCACATCATTGCCATAAAGTCTCCGAA
GCTCTGCAACATTCACACCCCCTTCCAGTCTTGACCTCGACCTCCAGTTC
CAACGCATCATGCACACCCTCCTGGAAATATGAAATCATCTTACCACGAA
AAATATCAAACATAGTATACAAGTCCTGNACCTCGACCTCCAGTTCCAAC
GCATCATGCACACCCTCCTGGAAATATGAAATCATCTTACCACGAAAAAT
ATCAAACATAATATACAAGTCCTGCTCCTTCTTCACGCTACCAAGCCAAG
GTTCTATTTCTGAGCCAGGATTGACACGTAACGTGCCTGAGCGGGCAAAT
CCCTGTTGTTCAGCAATGGCCTTAGCTGTCGCCTTAGCCCCTTGCGCCAC
GATGTGTGCGACGCTACTGGGGTCGTTAAAGGTGGCTGGTTTGCCCTGGC
TGGAGGGTGATGGCTGGTTGCCAGTAGGTGGGACTGGGTGGCTGGTGGTT
GGGCGTAGGTGACTTCACCCTCGTTGATCCTGTTGGCGTCAAGTTCGGCT
TGTACTCGTTGCTGGACGATCTCCTCCACGTTTTGTTGTAGTTCTTCCCC
GCAAGGGCGGAGAGGTCGATGCCCTCCATGGTGTCTGTTGTTGCGGGAGT
CTACCGATTGCGAGTGACTGCAAACCCCCCGGAAGGCTACGCCCGCGCGC
AGATACCGTGATATCGCACTAGTGTGAAAGGTAAACTACGTGGGGTGCAG
AAAGCCCGTCCTGGGCGTTACTTGAGACACTGGTAATCGGCCGTGTTATG
CCGAGCGAGAGAGGTTGAGAAAGAGGTGGAGAGAGACTGGGAGAAGGAAA
CTTGATTGGAGAGAGACGGCGGTGGCGGTGGAGAGAGAGAAGGCCGAAGT
GCGCAGCACGCACGCAAGCCTCATCGTTCCAACTACGCCAAAAGGGTCCC
CGTGACTGCACCAGTGGTACCCTACAACACACGAAATTCCCAACACGCAT
CCCCTTGGGATCCTCACGACCAGATACTGCTGCGAGTAAATCTGACATAC
TGGATGGTAGGCGATGGAGTTGACCCAGAAGAACTTCGAAATGTATGATA
CAAATAGAAAGGAGGAGACATACACGAGTAGTAGATATTGTGAGCACCCC
GCCCATCCTGTCCTGTAGTCCATGCTGCGAAGGGCTTGCTGCGCACATTC
GCATACCGGGGCAAACAAACAATACCGAGCCCCGGAGTTAACCCAGAAGA
ACTTCGAAATGTATGGTACAAATAGAAAGGAGGAGACATTAACGAGTAGT
AGATATTGTGAGCACCCCGCCCATCCTGTCCTGTAGTCTATGCTGCGAAG
GGCTTGCGCACATTCGCATACCGGGGCAAACAAACAATACCGAGCCCCGG
CTTGTAATCTTTCGCGACAGACACCTCCCTTGCTCGCTCGCCGACACCGG
CAACGATAGGACTGCGGCAAGAACATAACGAAGACTATCTCTCCCCTCCC
GTCCGCCCACGCGCGTGGTATCAATGCATTTGCATGTGGTCGCCCTATTC
TGCGCCACCTCAGTATCTGGATGGGATTAGCGTGCCGGAAGACGTGGTTT
CGACTCCTAACCCTCTGCTCGTGGTGAACGGCAGGGTCAACATGGCCGCG
CCGGATGTAGGCGCCGGGGGGGGCGGGGAGACTCGTCAGATTGCGGCCAT
TGAGGCCAACCACATGGTTTCCACCGGAAGGGTCAATACTCGCGTCGGCC
TGTAAAGTTGTTGTTGCTACGGCAAACGCCTA
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Coding sequence (CDS) from alignment at Scaffold_91:535023..538954+

>EsuBft920_15a-0001 ID=EsuBft920_15a-0001|Name=EsuBft920_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=906bp|location=Sequence derived from alignment at Scaffold_91:535023..538954+ (Ectocarpus subulatus male Bft15b)
ATGCTACCGATAAGCTTCCACTTCGAGCAGTCGACCATCAACTACAACGA
CATACTTGCTACTGGCGGGGATCTCTTGCAGGTCGTACATGTGCCGGCTG
CTGTTGGCCCACGTCCACGAAGAGGTCGCGGGGGGATGAGGCTTGGCTCC
AGCCACCGCCACCATGACCGGTGTGGTGCTGCTGCCCTTTTATCCTCGCC
CATCGCCCGCCACCGGGGCCGGGCCCGGCGGCGGTCTACCCCCTCGCTGG
CTATCGCCGCCACCGCGGCTGCCGCCGCTCGAGCGGCGTTCCTCAGCGCC
CTCCCTCGAACGCGCGCGCCGCAGTTGCTGCTGGAAACGACACTGCTCGT
TGGTGGGAAGCTCGGACTGGTGGTAGCGGCAAAATCCGCTGAGGTCGTCG
TTGAACACGTCACCGTTCTTCTTCTCTCCGTCTCGATCTGGGCCGCCAGC
TGCTGCGTGACCGCCGTCTTGACCCCCGGATGCCCCCCCACTTCCCCCGC
CGCTCCGGCCCATGCCGGACGCGGCGAGAGCGAGCTCCACCTCGCGCCTC
TCCCCCTTGCTCCTCTCGCGCTCCATCTCCACGTGGGTGTCCCTCACCAC
AGTCTCAAGGGACTGCGGCAAGAACATAACGAAGACTATCTCTCCCCTCC
CGTCCGCCCACGCGCGTGGTATCAATGCATTTGCATGTGGTCGCCCTATT
CTGCGCCACCTCAGTATCTGGATGGGATTAGCGTGCCGGAAGACGTGGTT
TCGACTCCTAACCCTCTGCTCGTGGTGAACGGCAGGGTCAACATGGCCGC
GCCGGATGTAGGCGCCGGGGGGGGCGGGGAGACTCGTCAGATTGCGGCCA
TTGAGGCCAACCACATGGTTTCCACCGGAAGGGTCAATACTCGCGTCGGC
CTGTAA
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