EsuBft1066_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1066_5a-0001
Unique Name	EsuBft1066_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_85	contig	Scaffold_85:166231..171047 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Symbol	ABC
Status	Manually annotated
Seed ortholog	2880.D8LLV9
ProteomeId	EsuBft1066_5
Protein domains	IPR017871
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	IPR003439
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	PTHR24221
Protein domains	IPR027417
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Owner	apollo_admin@sb-roscoff.fr
Note	abc transporter b family member 4 os:dictyostelium discoideum gn:abcb4 pe:3 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	1939
Hectar predicted targeting category	mitochondrion
Evalue	1.75e-96
EggNOG OGs	COG1132@1\|root,KOG0058@2759\|Eukaryota
Date last modified	2016-09-04
Date creation	2016-06-14
KEGG ko	ko:K05655,ko:K05657
KEGG TC	3.A.1.201
KEGG Pathway	ko02010,map02010
Description	ATP-binding cassette transporter superfamily
Description	ATPase activity, coupled to transmembrane movement of substances
COG category	V
BRITE	ko00000,ko00001,ko02000
Note	Avia K., annotator

Cross References

External references for this mRNA


Database	Accession
EC	3.6.3.23
GO	0005774
GO	0005743
GO	0005524
GO	0055085
GO	0042803
GO	0005319
GO	0006200
GO	0000325
GO	0035672
GO	0032592
GO	0010044
GO	0015421

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1066_5a	EsuBft1066_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_85 166231..171047 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1066_5a-0001	EsuBft1066_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_85 166231..169750 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1066_5a-0001-exon	agat-exon-107543	Ectocarpus subulatus male Bft15b	exon	Scaffold_85 166231..166511 +
EsuBft1066_5a-0001-exon	EsuBft1066_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_85 168088..168199 +
EsuBft1066_5a-0001-exon	agat-exon-107542	Ectocarpus subulatus male Bft15b	exon	Scaffold_85 168695..168841 +
EsuBft1066_5a-0001-exon	agat-exon-107544	Ectocarpus subulatus male Bft15b	exon	Scaffold_85 169649..171047 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1066_5a-0001-cds	EsuBft1066_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_85 166231..166511 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1066_5a-0001-exon	agat-three_prime_utr-644	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_85 169751..171047 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_85:166231..171047+
coding sequence from alignment at Scaffold_85:166231..171047+

spliced messenger RNA

>EsuBft1066_5a-0001 ID=EsuBft1066_5a-0001|Name=EsuBft1066_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1939bp|location=Sequence derived from alignment at Scaffold_85:166231..171047+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGTCGTCACGTGTTGCTTGCTGTACCATCACGGCCGCCCGTGG
CTTGGCACGTGGGGCCCGATTGCTTTTTTTTCGGCGGCATCGACGCAGGA
CCATCGCGCAGAACATCGCGTACGGCGCGGCGGCGGCAGCGGCGGCGGCG
ACGGCTAAAGGAAACGGGGGAGCTCGGGCGGAGGGGGTTGGGGAGTTGGG
GGGCGGCGTTACGATGGACAAGGTTGTGCAGGCGGCGGAGCTTGCCAACG
CGAAGGATTTCATCGAGGAGTTCCCCGATGGGTTCGAAACTTTCGTCGGA
GAGGGGGGGGTGCAGCTCTCTGGCGGTCAACGGCAGAGGATCGCGATCGC
ACGCGCGGTGCTTAAGGACGCGCGTATTCTGATTCTGGACGAGGCCACGA
GCGCGTTGGACGCGCACAGCGAAGCCCTCGTTCAGGAGGCGCTGTCTCGC
CTCACCAAAGGCCGGACGGTGCTGGTCATAGCGCATCGGCTGTCGACGGT
GGTCAACGCGGACAAGATCTGCGTCTTGAGTCAGGGCAAGGTTATCGAGG
AAGGGAAGCACGATGAGCTGCTCGAACGCGAGGGCGCTTACTACAACCTC
ATGAGCACGCAAGTTCGCTCCTTCTCCACCATCGGAGACTAGATTACATT
ACACTAGTTCCTTCGACGGCTTAACTACTGCGCTCGAGGAGGCTAACCTC
TTGGTGAAGGAGCCAGAGCTACCGTAGTCCACTCTCTCTCTCTTTCGTTC
TGTCAAGGGGTACAGTGGAAACTGTCCCGACAAGCTTGGATATTGGAAGA
ACGAAGCTCGAAGCGTTTCCTGTGTCCTGCTTGCTCCCAGATGGAGAAGA
AGGGAAGGAGCGAGTGCGCGTGTGCTTTTGTTGTTGTTATTAGCATCGAC
CGCGGTGACCGGCTGACCAATGAAATGATGGCAGTCTTGTAGCTGGGTAT
TTGTATGTCTGTTTTCTTATTTAGGAACGACCGCTCTAACCGGCTGACCA
ATGAAAAGATGTCAGTCTTGTGGCGGGGTAATCAACACGGAACAGTTCGT
GTGTGTGTGTGTGTGTGTGTGTGTTTTTTTTCCTGGTGCTGTGTCGGAGA
CGATACCATCACCTTGAAGGGAAACACCTTCCTCTCTCTGCCACTATTTT
TTGTCAGGCGGAATGGTACCATGCGTAGTACCCGATATGTTGCCGCTAAT
CCACCTAGGGAGGCTGCTCCGCAACATATCCGGACCCTTCGGACCCTTCT
GTGTTAATTCTGTCTCGCCCCGCCCTACCCAGATTTTTCGATCGATTGGT
GGCGAGAACCGGAGGGAAAAGAAGGAGAAACAGGGGGAGGCAGAGAACGA
GGATACATTAGTTGTACCGCTCTTGCGAGCCTGACGCCGCGGAATGGTGT
TCAGCTCGTATTCTTCTTTACTCTTTTTCCATGCGTCAGTTTTTCATTTG
TCGATTCCGATCAAATCAACTGAAACTTTTTTTTTGTGTCGGTGGTCTCG
ACTATTTTATAGACGCGGTTTTCAGGGTCCGTGTGTTGTGTTGGTGACGC
GTTGAAGTTCACCGCCTATGTCTGCCTGTCTGTCTGTCTGCCTGCCTGTC
CACTTGATGTCATGTGTTCAGAAAGAGAGAGAGGGAGTGAACAACAATCG
CGCGAGAGGGTGTGATGGGTGTTTGGACAGCATGGCACCTTTATTACTCC
AGCTTGGTGAAATCTTCTTCTTACCGCCATAGTCTAAGTCTAGAGCATTC
AGTTAACGTCTGGCATCGTGTTCCCACAGAGAGCGTTGCTCTCAACTCGG
TACAGTAGACTACCGCTTTGTGTGTGCATTCCCCCCCCCTTGTATATCTC
CCAGCAGAATTTCCTCCATGTGTGTTGAACCACCACCCTTTATGAATCAA
ACAAAGGCGTGCTGTGCTGTCAAGCATCACCCATGTCCT

protein sequence of EsuBft1066_5a-0001

>EsuBft1066_5 ID=EsuBft1066_5|Name=EsuBft1066_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=213bp
MPPSSRVACCTITAARGLARGARLLFFRRHRRRTIAQNIAYGAAAAAAAA
TAKGNGGARAEGVGELGGGVTMDKVVQAAELANAKDFIEEFPDGFETFVG
EGGVQLSGGQRQRIAIARAVLKDARILILDEATSALDAHSEALVQEALSR
LTKGRTVLVIAHRLSTVVNADKICVLSQGKVIEEGKHDELLEREGAYYNL
MSTQVRSFSTIGD

mRNA from alignment at Scaffold_85:166231..171047+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1066_5a-0001 ID=EsuBft1066_5a-0001|Name=EsuBft1066_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4817bp|location=Sequence derived from alignment at Scaffold_85:166231..171047+ (Ectocarpus subulatus male Bft15b)
ATGCCGCCGTCGTCACGTGTTGCTTGCTGTACCATCACGGCCGCCCGTGG
CTTGGCACGTGGGGCCCGATTGCTTTTTTTTCGGCGGCATCGACGCAGGA
CCATCGCGCAGAACATCGCGTACGGCGCGGCGGCGGCAGCGGCGGCGGCG
ACGGCTAAAGGAAACGGGGGAGCTCGGGCGGAGGGGGTTGGGGAGTTGGG
GGGCGGCGTTACGATGGACAAGGTTGTGCAGGCGGCGGAGCTTGCCAACG
CGAAGGATTTCATCGAGGAGTTCCCCGATGGGTATGTTGTTTTTCCTTTG
GGGGTGGGGCTTGGGGGCGGGGGGAAGGGGCGGGAGGGGAGGGGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNACCCCGCACAACATGATCTACTCGACCACCATTATGGTTACCGCCA
AAAAAAAACAGAGGTAAAAAAAAAATAAGACGGTAAGCTGGTTGCCGAGT
TCATGAAGTGAGTTGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAA
CCCAACCCCGATGGCAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACC
ATTGACCTCGCGTCCCTTCAAAGCCGGGACGGAGCACGCCGGGTTATCAC
CGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGTGAGATATTCGGC
GAGTCGCATGAAGGGTGCGCTGCATCCTGCTAAGGGTGTTCGGCATCTTG
TGCTTACTTCCTTGCGTACGGATGACAGCTGCGTATGACTAAATTTGTTT
TCTGGTGCTTTCACTTCCAGAGACAGTTGTAAGCACTGTGTAACTGCCTC
GAGGGTGCTTGACCATTTTAACACAACGTGGTGCGATCATCCCCCTTGCG
TGGCGTGAGAGTTCTCCACCCCGCACAACATGATCTACTCGACCACCATT
ATGGTTACCGCCCAAAAAAAAAAAAAACGGTAACCTGGTTGCCGAGTTCA
CGAAGTGAATTGGCGTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCC
AACCCTGATGGCAAACACCGGGGAGGAGAGGGGGGCTCTCTTTGGCAAAA
TTGTGTGATACCGCCGGTTTCCCACGGGCCGGTTGCTTTGTGCCCTTTGG
AACGGGAGTGTTGTCGCTTGTGTGGCCGCGGTTTCCTGTGTTCCGGGTAC
CATGTGGCGCGGTGCGGAGAGGTGTCGTCAAGCATTTCCGCCATGGGCTG
GCTGTCCCGTTTCGTGAGATATTCCTTGCCAGCGGCAGGAGACGTAGCAG
TGTTCTTCCATGGGTAAATATCCACGGAAATTGAGACTAGGCAAACGCCA
TCACATTCGCGACCAGCGACAATTTTCGTATCGATCTCTCTGCGCGCTTG
CTGTCCTTACAGCTCCCTGTTCTTGACGCACCCTGCAAAGAAAGCGGAGC
AATTCGAATCGCTCCGACAGCAGCACGATGTTTGCATATTGTTTTTTTTT
CTGGCAGGTTCGAAACTTTCGTCGGAGAGGGGGGGGTGCAGCTCTCTGGC
GGTCAACGGCAGAGGATCGCGATCGCACGCGCGGTGCTTAAGGACGCGCG
TATTCTGATTCTGGACGAGGTGCGTCGCGGTGATGAACTCCTAAGCCTGT
GTCTGTTTCGTCGCGGGGAGGGGTCTGAGCAAAGTGAGAAGTGAGAAGGG
GTGGAAATTGATATGCGGGCAAGAGGGAGACACTCACAGGGAGTGAAAGG
GAGGGGGGGGGTTGTGAACAAGGTGAGAAGGGGTGGATTAGATGCGCCAC
GAACGCGGGAGACATACACAGGAAGAGGTTAAGAGAGTAGAAGGGGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGGAGAAAGACAGAGCGCGATGCATGCAC
GAGGCATCATGTAGTAGAGCAATAGGCTCCACTCGGCATCGACGCAAATA
TCGCCTCGTTTCCGACCCCGAATTACCCACAACAGTAAACCCCATGGTAA
CAACCAAGAACAGCAAGGTGACTGTCCTCGTGTCGGTACCCGGTGCCTCG
TTTCTCCACGTCAGGCCACGAGCGCGTTGGACGCGCACAGCGAAGCCCTC
GTTCAGGAGGCGCTGTCTCGCCTCACCAAAGGCCGGACGGTGCTGGTCAT
AGCGCATCGGCTGTCGACGGTGGTCAACGCGGACAAGATCTGCGTCTTGA
GTCAGGGCAAGGTACGGTGAAAAGCCAAGAGTATTGCTGTGACATCCCAA
CCCCCCCGACCTCGGCCCTAATCCCCCCCGGGCCGTCCTTCGGTTATCCG
GGATGCCTGACCAAGGCCCATGGCATATCTGTTTTGGCACAGCAGAGGCA
AGGATGAGAACCAGCTTATTGTTCATTGTTATGAAACGCAACCTGGGCCG
GCGATCACCTGACATATCGCTTCGTCCCGGCATTGTAGGAATGCGAGGTC
TATGGTCTTCACGACTACGACATCCTTTGACATGAGTACTCCCCCCCCGC
TAGACGACGTGAGTCGATTGTCCAATCCGGCAAGCATGTCGATGAAAACG
CGGAAGCCTAAAGATTCATCATGACACCCCTTCGCTCAGGTGTTTTTTTT
TTTTCATGAAAACGCTTGTTTTGAGGAGAGGGCCACCTGCTTCATACAAA
TCCGTGCGATGTACGAATCCAGTCCCACTTTTGCGGGTCGTTCCTCCTCA
GACCCGCCATATCTGGGGCCTATTCTTAGCGGGGTTCCATCGTATTCATG
AAGGTGACTCTCATGCCTGGTGATGACGCACCAGTTGTACTCCCGCACCC
GCCCCCCAACTTCGCTCTGTTCAACCCCGTCCTGAACTATGTCCTTGTGT
CCAAAAGATAGTATTGACGAGAACGCAGTTGCTTTTCGGAAGTGATGCAT
GGTCAATGAACCAATCAAAGAAAAAGGGAAACAACAACGGACCCCTCGCC
CCCGCCCCCTATCACCGACTCTTCCCACTGCTGTCGACGCGGCCGGATAT
GTTTTTTCGGGGAAGCAGGTTATCGAGGAAGGGAAGCACGATGAGCTGCT
CGAACGCGAGGGCGCTTACTACAACCTCATGAGCACGCAAGTTCGCTCCT
TCTCCACCATCGGAGACTAGATTACATTACACTAGTTCCTTCGACGGCTT
AACTACTGCGCTCGAGGAGGCTAACCTCTTGGTGAAGGAGCCAGAGCTAC
CGTAGTCCACTCTCTCTCTCTTTCGTTCTGTCAAGGGGTACAGTGGAAAC
TGTCCCGACAAGCTTGGATATTGGAAGAACGAAGCTCGAAGCGTTTCCTG
TGTCCTGCTTGCTCCCAGATGGAGAAGAAGGGAAGGAGCGAGTGCGCGTG
TGCTTTTGTTGTTGTTATTAGCATCGACCGCGGTGACCGGCTGACCAATG
AAATGATGGCAGTCTTGTAGCTGGGTATTTGTATGTCTGTTTTCTTATTT
AGGAACGACCGCTCTAACCGGCTGACCAATGAAAAGATGTCAGTCTTGTG
GCGGGGTAATCAACACGGAACAGTTCGTGTGTGTGTGTGTGTGTGTGTGT
GTTTTTTTTCCTGGTGCTGTGTCGGAGACGATACCATCACCTTGAAGGGA
AACACCTTCCTCTCTCTGCCACTATTTTTTGTCAGGCGGAATGGTACCAT
GCGTAGTACCCGATATGTTGCCGCTAATCCACCTAGGGAGGCTGCTCCGC
AACATATCCGGACCCTTCGGACCCTTCTGTGTTAATTCTGTCTCGCCCCG
CCCTACCCAGATTTTTCGATCGATTGGTGGCGAGAACCGGAGGGAAAAGA
AGGAGAAACAGGGGGAGGCAGAGAACGAGGATACATTAGTTGTACCGCTC
TTGCGAGCCTGACGCCGCGGAATGGTGTTCAGCTCGTATTCTTCTTTACT
CTTTTTCCATGCGTCAGTTTTTCATTTGTCGATTCCGATCAAATCAACTG
AAACTTTTTTTTTGTGTCGGTGGTCTCGACTATTTTATAGACGCGGTTTT
CAGGGTCCGTGTGTTGTGTTGGTGACGCGTTGAAGTTCACCGCCTATGTC
TGCCTGTCTGTCTGTCTGCCTGCCTGTCCACTTGATGTCATGTGTTCAGA
AAGAGAGAGAGGGAGTGAACAACAATCGCGCGAGAGGGTGTGATGGGTGT
TTGGACAGCATGGCACCTTTATTACTCCAGCTTGGTGAAATCTTCTTCTT
ACCGCCATAGTCTAAGTCTAGAGCATTCAGTTAACGTCTGGCATCGTGTT
CCCACAGAGAGCGTTGCTCTCAACTCGGTACAGTAGACTACCGCTTTGTG
TGTGCATTCCCCCCCCCTTGTATATCTCCCAGCAGAATTTCCTCCATGTG
TGTTGAACCACCACCCTTTATGAATCAAACAAAGGCGTGCTGTGCTGTCA
AGCATCACCCATGTCCT

Coding sequence (CDS) from alignment at Scaffold_85:166231..171047+

>EsuBft1066_5a-0001 ID=EsuBft1066_5a-0001|Name=EsuBft1066_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=642bp|location=Sequence derived from alignment at Scaffold_85:166231..171047+ (Ectocarpus subulatus male Bft15b)
ATGCCGCCGTCGTCACGTGTTGCTTGCTGTACCATCACGGCCGCCCGTGG
CTTGGCACGTGGGGCCCGATTGCTTTTTTTTCGGCGGCATCGACGCAGGA
CCATCGCGCAGAACATCGCGTACGGCGCGGCGGCGGCAGCGGCGGCGGCG
ACGGCTAAAGGAAACGGGGGAGCTCGGGCGGAGGGGGTTGGGGAGTTGGG
GGGCGGCGTTACGATGGACAAGGTTGTGCAGGCGGCGGAGCTTGCCAACG
CGAAGGATTTCATCGAGGAGTTCCCCGATGGGTTCGAAACTTTCGTCGGA
GAGGGGGGGGTGCAGCTCTCTGGCGGTCAACGGCAGAGGATCGCGATCGC
ACGCGCGGTGCTTAAGGACGCGCGTATTCTGATTCTGGACGAGGCCACGA
GCGCGTTGGACGCGCACAGCGAAGCCCTCGTTCAGGAGGCGCTGTCTCGC
CTCACCAAAGGCCGGACGGTGCTGGTCATAGCGCATCGGCTGTCGACGGT
GGTCAACGCGGACAAGATCTGCGTCTTGAGTCAGGGCAAGGTTATCGAGG
AAGGGAAGCACGATGAGCTGCTCGAACGCGAGGGCGCTTACTACAACCTC
ATGAGCACGCAAGTTCGCTCCTTCTCCACCATCGGAGACTAG