EsuBft961_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft961_7a-0001
Unique NameEsuBft961_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_82contigScaffold_82:194566..196269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft961_7
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length48
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft961_7aEsuBft961_7aEctocarpus subulatus male Bft15bgeneScaffold_82 194566..196269 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_7a-0001-exonagat-exon-89204Ectocarpus subulatus male Bft15bexonScaffold_82 194566..194571 -
EsuBft961_7a-0001-exonagat-exon-89205Ectocarpus subulatus male Bft15bexonScaffold_82 194825..195061 -
EsuBft961_7a-0001-exonEsuBft961_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_82 196024..196269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_7a-0001-cdsEsuBft961_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_82 194566..194571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_7a-0001EsuBft961_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_82 194566..196269 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft961_7a-0001 ID=EsuBft961_7a-0001|Name=EsuBft961_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=489bp|location=Sequence derived from alignment at Scaffold_82:194566..196269- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATACACGAAACAGAGTGTCTGAATCCTTGCCACCTCCGGTGCAACA
CCCGACTCGCCGAACTGAATCAATCAAGGCCGCCAAGGCCGCCGTGGTGG
AGAAGGACGCCGCCATCGCCAAGAGCCTGCAGCTGGCGAGGAAGGAGAAA
GATGCCTTCGACATGGACCTTAAGGCCGCGAATGCCGAGGCTGGCCGTTT
CAGGGACATGGTTGAGACCAGGGCGGACATGGACGACGAGTACAGGGCGT
TAGCCGAGGCATCCGACACCCTCGACGAGCGAGTCCAAGACTACGAGGCA
AGGCTCAGGGTCCTCGCGGAGGAGAATGACGGCATCAGGGCTGACTACTC
GGCCGAGATCAAGAGCATGGAGGCGGAGCGGTCGTCCATGCGGGAGCGCA
TCGCTAACCTGGAGAGCGCTCTGACGTCGTCGGAGACGGCTATCGACCAG
CAGCGAGCGGACCTCCAGGCTGAGCTACGGAAGTTGTAG
back to top

protein sequence of EsuBft961_7a-0001

>EsuBft961_7 ID=EsuBft961_7|Name=EsuBft961_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=162bp
MHTRNRVSESLPPPVQHPTRRTESIKAAKAAVVEKDAAIAKSLQLARKEK
DAFDMDLKAANAEAGRFRDMVETRADMDDEYRALAEASDTLDERVQDYEA
RLRVLAEENDGIRADYSAEIKSMEAERSSMRERIANLESALTSSETAIDQ
QRADLQAELRKL
back to top

mRNA from alignment at Scaffold_82:194566..196269-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft961_7a-0001 ID=EsuBft961_7a-0001|Name=EsuBft961_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1704bp|location=Sequence derived from alignment at Scaffold_82:194566..196269- (Ectocarpus subulatus male Bft15b)
ATGCATACACGAAACAGAGTGTCTGAATCCTTGCCACCTCCGGTGCAACA
CCCGACTCGCCGAACTGAATCAATCAAGGCCGCCAAGGCCGCCGTGGTGG
AGAAGGACGCCGCCATCGCCAAGAGCCTGCAGCTGGCGAGGAAGGAGAAA
GATGCCTTCGACATGGACCTTAAGGCCGCGAATGCCGAGGCTGGCCGTTT
CAGGGACATGGTTGAGACCAGGGCGGACATGGACGACGAGTACAGGGTGA
GGCCTATTTCCTTTGGTGGTGGTGTAGGTAGGAGTGTTATTAGTTGTTGT
TGTTGTCTTTACTGTATTTTTTTTCGGTCTCTACTCAGCATCCTTGCAAG
GCTTTTTGGCGGCTTACGCCGCCACGCTGAGAGAATCGTTCCGCGAGACG
CGTGTCGTCGGTGTTCGTTGTTTATGGTCGTCTCTTGCCGGTGTATTTTT
CATTTCGCGATACTCACGTAATGTGCAGTCTGTTGCGAAACCGAAGGTGT
GCGAAGGGATGCGTGTCTTTGGTTGTCCAACTGACTCGGGTGCTGCTAGG
ACATGAATTTCTCGATAGCAGCAGTAGTGTGGGTAAATGACTTGTGGGAG
GACTTCCCGGATGTGGGACAGCGGGACGACTTGGTCTTTCGTGTGGGAAG
CGTAGGGCTTCTTTTTTTTTTCGGAAGCTGGTTTTCAAGTACAAGCTTGG
AATTTGTCAGGTACAATCCACCAGAAACTGTTTCTTGTTGTACCAACAAT
GACGACGACAACAACAAAAGCCACTCCAACGGCATGACCACCATTAACTG
CAACACGAAAAAACAGCGCTTAAGAAAAAGTGTCTGCACCGCTCGCGCTT
AACAGGGCATAGCAGAAGCAGCAACACGATAAACAGCACCAAAAACAGCA
ACGATCAATCCTGACCGGGCTGCACCCCCCTTAACTGGCCTTAGCCGACG
GCAAGACCGAAAAGAACAACGCTACAAACAGCAACAGCAGTTGCTGCCAG
TCTGCACTGGTCTTACCTCCCCCCCCCTGTCCTTAGCCGACAAGATCAAC
ACGAAAATCAACGCCGATAACAGCAACCGCAATCTCTACCGATCTGCACC
CCCCCCTCTTGCCCCCACACGTAAAAACACAAAGGTAGCAACAGCAACAG
CAACAGCAACAGCAACAGCAACAATTAAATTTCTACCGATCTTGCCCCCA
CTCGGCAGGCGTTAGCCGAGGCATCCGACACCCTCGACGAGCGAGTCCAA
GACTACGAGGCAAGGCTCAGGGTCCTCGCGGAGGAGAATGACGGCATCAG
GGCTGACTACTCGGCCGAGATCAAGAGCATGGAGGCGGAGCGGTCGTCCA
TGCGGGAGCGCATCGCTAACCTGGAGAGCGCTCTGACGTCGTCGGAGACG
GCTATCGACCAGCAGCGAGCGGACCTCCAGGCTGAGCTACGGAAGGTCAG
TTGTTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTTTGGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGCTGCTGTGGTTGCTGTGGTTGTCGTTGTC
GTAGTTCGATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TCGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTAGTT
GTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_82:194566..196269-

>EsuBft961_7a-0001 ID=EsuBft961_7a-0001|Name=EsuBft961_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=489bp|location=Sequence derived from alignment at Scaffold_82:194566..196269- (Ectocarpus subulatus male Bft15b)
ATGCATACACGAAACAGAGTGTCTGAATCCTTGCCACCTCCGGTGCAACA
CCCGACTCGCCGAACTGAATCAATCAAGGCCGCCAAGGCCGCCGTGGTGG
AGAAGGACGCCGCCATCGCCAAGAGCCTGCAGCTGGCGAGGAAGGAGAAA
GATGCCTTCGACATGGACCTTAAGGCCGCGAATGCCGAGGCTGGCCGTTT
CAGGGACATGGTTGAGACCAGGGCGGACATGGACGACGAGTACAGGGCGT
TAGCCGAGGCATCCGACACCCTCGACGAGCGAGTCCAAGACTACGAGGCA
AGGCTCAGGGTCCTCGCGGAGGAGAATGACGGCATCAGGGCTGACTACTC
GGCCGAGATCAAGAGCATGGAGGCGGAGCGGTCGTCCATGCGGGAGCGCA
TCGCTAACCTGGAGAGCGCTCTGACGTCGTCGGAGACGGCTATCGACCAG
CAGCGAGCGGACCTCCAGGCTGAGCTACGGAAGTTGTAG
back to top