EsuBft1029_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1029_11a-0001
Unique Name	EsuBft1029_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_70	contig	Scaffold_70:418867..421006 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1029_11
Protein domains	IPR001878
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	214
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1029_11a	EsuBft1029_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_70 418867..421006 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1029_11a-0001-exon	EsuBft1029_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_70 418867..421006 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1029_11a-0001-cds	EsuBft1029_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_70 418867..420510 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1029_11a-0001-exon	agat-three_prime_utr-271	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_70 420511..421006 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1029_11a-0001	EsuBft1029_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_70 418867..420510 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_70:418867..421006+
coding sequence from alignment at Scaffold_70:418867..421006+

spliced messenger RNA

>EsuBft1029_11a-0001 ID=EsuBft1029_11a-0001|Name=EsuBft1029_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2140bp|location=Sequence derived from alignment at Scaffold_70:418867..421006+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCGAGCAGATCGACAGCATGCGGTCTGAGATCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGGTCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTCGGGACGACACAGCGGCGAAGTAGGGGGTTCAGACCCCCAAGA
GGTGAGAGTAGCCGCTGCTCACAATCAAGCTTGTTTCAGCAGCGCCATGG
GAAGTGGTGCTGCTGTCTTTGGTAGTGCGAGCGTGGGATACCAAAGCGTG
AAGTACACAGCGCCCACGTTCAGCGGAGACGCCAAGAGCTTTTCTTCGTG
GCTAGAGGATTTTTTTATGGCAGCGAACACAGCAAACCTTCTTGAGCTTT
TCGAGGAGGGGGGGGGGGAGATCCCCGTAAACAGTGGGCAGAGCAAAGTC
CAACTGTCCAGGTTTTACCCGCACGACAAAGTAGAGCTCGCTTTCCACGC
GTGGAATTTCCTCCGTGGAGCTCTCAAGGACGAGAAAGACAGGACAATAA
TGAAGCGAGCTGAGTCGCCCCTGGGGGCGCTCCGTGAGCTGAAGGGGTTG
TACGACCCAGAATCGTCCATGCAGCCTGCGGATGAGTTAAAATCCCTGAC
ATCCAAGAAGATCCCGATGGCAGAGAATCCGCAACATGCTCTCAACAGTA
TGCTCGCCACCGCAGAGTCCCTTTCGAAACGGGGGCTTGATGTTAACGAA
ACCTTCGTTTTGCACCTCTTCTTGGATGCCCTCTCCAACGAGTACGCTAT
GACCAAGCACGCCCTCAGACACAAGGAGAGGTTGACAAGGAGTGACGTCC
TGAAGGAGGTCACCATCGAATATCGATCGATCATGGAGAAGGTGAAGGCG
GGGAAAGGCAAGGGCGCGCGCGGCGCCGAGCAGGCCTACCTCGCCGATGG
AGGCGGCCGCCGTGGGCGGTCGTCGTGGCGTGGGGGCGGCCGCCGAGGGC
GGTCGTCCTGGCGTGGTCGTGGCGGTGGCCGCAGCGGCGGCCGCGGGGGC
GGCGACAGCAGCGGAAAAGGCGGTGGCGGCGTCGAGGAGAGCAAGGGGAG
TGGCTCTGGTGGGGCAGATGGCGGCGGTACCGGGGACAAGAAGTTCCCGG
GCCGGTGCTTCACGTGTGGCCGTTTCGGACACACGCAGCAGGACTGCACC
ACCAAGGAGAGCGACTACCTCCCGCAGTGCTCACACTGCGCAGGATGGGG
TCACAGCAAGGACAAGTGCGCGACGGAGGAGGCCGTCCTGGCGCAGATCG
TCCATGCCGACAGCGACGCCGACTCCGTCGACAACCAGGCCTTCTGCGCG
GCGCCGGGCCTGCCAGGCGAGTGTGGTGCTGTTGACCTAGGTCTAGTGGG
GGTAACGGAACTAGGCCAGGATGTCATGGTGTACGTGGCTGATACAGCAG
CCACGTGCTCCATGTTCCGATGCGCAAACGCGTTCGTGAACTAGCGCGAG
TATAGTGGTTGGGTCAAGGGGCTCGGAGGCAACAAGGCCCCCGTTCCTCT
CCTAGGGTACGGAGACGTGACCGTAGTCTTTCTGACCGAAGGCGGTAGGG
TACCAGTGCTAATCCTGAACGCCGCTCATGTGCCCGAGTCCCCCCACAAC
CTTCTCTCACTGTCGGCGTTGGCCGAGGAAGGCCACACGTATTCCGGCCA
GAAGGGGGGGCTGACTCTCACTACGAGGACCGGGGGGAAGGTGTGGTTCC
CCCGGACGGGTAAGCTGCTAACTCAAGAAGGCTATCAAATCGAGCCGAAG
GTAGACATCGCCTGTGCCGCAACAATTGTTCCTGGCGATGCGAAAGCAGC
CACCCCCACTGACCTCAACTAATATCACAATTCGCACGGCCACACGCACG
AGGAACTGCTCCAGAAAACGGCGAAACAGCAAGGAGTGCAGCTGACGGGA
GGACCGCTGCTACCATGCCTCGGCTGTTCGATGTCCAAGC

protein sequence of EsuBft1029_11a-0001

>EsuBft1029_11 ID=EsuBft1029_11|Name=EsuBft1029_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=547bp
MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLVQLVGGLA
ARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQYDGSAQAADLRRES
GPSGRHSGEVGGSDPQEVRVAAAHNQACFSSAMGSGAAVFGSASVGYQSV
KYTAPTFSGDAKSFSSWLEDFFMAANTANLLELFEEGGGEIPVNSGQSKV
QLSRFYPHDKVELAFHAWNFLRGALKDEKDRTIMKRAESPLGALRELKGL
YDPESSMQPADELKSLTSKKIPMAENPQHALNSMLATAESLSKRGLDVNE
TFVLHLFLDALSNEYAMTKHALRHKERLTRSDVLKEVTIEYRSIMEKVKA
GKGKGARGAEQAYLADGGGRRGRSSWRGGGRRGRSSWRGRGGGRSGGRGG
GDSSGKGGGGVEESKGSGSGGADGGGTGDKKFPGRCFTCGRFGHTQQDCT
TKESDYLPQCSHCAGWGHSKDKCATEEAVLAQIVHADSDADSVDNQAFCA
APGLPGECGAVDLGLVGVTELGQDVMVYVADTAATCSMFRCANAFVN

mRNA from alignment at Scaffold_70:418867..421006+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1029_11a-0001 ID=EsuBft1029_11a-0001|Name=EsuBft1029_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2140bp|location=Sequence derived from alignment at Scaffold_70:418867..421006+ (Ectocarpus subulatus male Bft15b)
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCGAGCAGATCGACAGCATGCGGTCTGAGATCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGGTCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTCGGGACGACACAGCGGCGAAGTAGGGGGTTCAGACCCCCAAGA
GGTGAGAGTAGCCGCTGCTCACAATCAAGCTTGTTTCAGCAGCGCCATGG
GAAGTGGTGCTGCTGTCTTTGGTAGTGCGAGCGTGGGATACCAAAGCGTG
AAGTACACAGCGCCCACGTTCAGCGGAGACGCCAAGAGCTTTTCTTCGTG
GCTAGAGGATTTTTTTATGGCAGCGAACACAGCAAACCTTCTTGAGCTTT
TCGAGGAGGGGGGGGGGGAGATCCCCGTAAACAGTGGGCAGAGCAAAGTC
CAACTGTCCAGGTTTTACCCGCACGACAAAGTAGAGCTCGCTTTCCACGC
GTGGAATTTCCTCCGTGGAGCTCTCAAGGACGAGAAAGACAGGACAATAA
TGAAGCGAGCTGAGTCGCCCCTGGGGGCGCTCCGTGAGCTGAAGGGGTTG
TACGACCCAGAATCGTCCATGCAGCCTGCGGATGAGTTAAAATCCCTGAC
ATCCAAGAAGATCCCGATGGCAGAGAATCCGCAACATGCTCTCAACAGTA
TGCTCGCCACCGCAGAGTCCCTTTCGAAACGGGGGCTTGATGTTAACGAA
ACCTTCGTTTTGCACCTCTTCTTGGATGCCCTCTCCAACGAGTACGCTAT
GACCAAGCACGCCCTCAGACACAAGGAGAGGTTGACAAGGAGTGACGTCC
TGAAGGAGGTCACCATCGAATATCGATCGATCATGGAGAAGGTGAAGGCG
GGGAAAGGCAAGGGCGCGCGCGGCGCCGAGCAGGCCTACCTCGCCGATGG
AGGCGGCCGCCGTGGGCGGTCGTCGTGGCGTGGGGGCGGCCGCCGAGGGC
GGTCGTCCTGGCGTGGTCGTGGCGGTGGCCGCAGCGGCGGCCGCGGGGGC
GGCGACAGCAGCGGAAAAGGCGGTGGCGGCGTCGAGGAGAGCAAGGGGAG
TGGCTCTGGTGGGGCAGATGGCGGCGGTACCGGGGACAAGAAGTTCCCGG
GCCGGTGCTTCACGTGTGGCCGTTTCGGACACACGCAGCAGGACTGCACC
ACCAAGGAGAGCGACTACCTCCCGCAGTGCTCACACTGCGCAGGATGGGG
TCACAGCAAGGACAAGTGCGCGACGGAGGAGGCCGTCCTGGCGCAGATCG
TCCATGCCGACAGCGACGCCGACTCCGTCGACAACCAGGCCTTCTGCGCG
GCGCCGGGCCTGCCAGGCGAGTGTGGTGCTGTTGACCTAGGTCTAGTGGG
GGTAACGGAACTAGGCCAGGATGTCATGGTGTACGTGGCTGATACAGCAG
CCACGTGCTCCATGTTCCGATGCGCAAACGCGTTCGTGAACTAGCGCGAG
TATAGTGGTTGGGTCAAGGGGCTCGGAGGCAACAAGGCCCCCGTTCCTCT
CCTAGGGTACGGAGACGTGACCGTAGTCTTTCTGACCGAAGGCGGTAGGG
TACCAGTGCTAATCCTGAACGCCGCTCATGTGCCCGAGTCCCCCCACAAC
CTTCTCTCACTGTCGGCGTTGGCCGAGGAAGGCCACACGTATTCCGGCCA
GAAGGGGGGGCTGACTCTCACTACGAGGACCGGGGGGAAGGTGTGGTTCC
CCCGGACGGGTAAGCTGCTAACTCAAGAAGGCTATCAAATCGAGCCGAAG
GTAGACATCGCCTGTGCCGCAACAATTGTTCCTGGCGATGCGAAAGCAGC
CACCCCCACTGACCTCAACTAATATCACAATTCGCACGGCCACACGCACG
AGGAACTGCTCCAGAAAACGGCGAAACAGCAAGGAGTGCAGCTGACGGGA
GGACCGCTGCTACCATGCCTCGGCTGTTCGATGTCCAAGC

Coding sequence (CDS) from alignment at Scaffold_70:418867..421006+

>EsuBft1029_11a-0001 ID=EsuBft1029_11a-0001|Name=EsuBft1029_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1644bp|location=Sequence derived from alignment at Scaffold_70:418867..421006+ (Ectocarpus subulatus male Bft15b)
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCGAGCAGATCGACAGCATGCGGTCTGAGATCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGGTCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTCGGGACGACACAGCGGCGAAGTAGGGGGTTCAGACCCCCAAGA
GGTGAGAGTAGCCGCTGCTCACAATCAAGCTTGTTTCAGCAGCGCCATGG
GAAGTGGTGCTGCTGTCTTTGGTAGTGCGAGCGTGGGATACCAAAGCGTG
AAGTACACAGCGCCCACGTTCAGCGGAGACGCCAAGAGCTTTTCTTCGTG
GCTAGAGGATTTTTTTATGGCAGCGAACACAGCAAACCTTCTTGAGCTTT
TCGAGGAGGGGGGGGGGGAGATCCCCGTAAACAGTGGGCAGAGCAAAGTC
CAACTGTCCAGGTTTTACCCGCACGACAAAGTAGAGCTCGCTTTCCACGC
GTGGAATTTCCTCCGTGGAGCTCTCAAGGACGAGAAAGACAGGACAATAA
TGAAGCGAGCTGAGTCGCCCCTGGGGGCGCTCCGTGAGCTGAAGGGGTTG
TACGACCCAGAATCGTCCATGCAGCCTGCGGATGAGTTAAAATCCCTGAC
ATCCAAGAAGATCCCGATGGCAGAGAATCCGCAACATGCTCTCAACAGTA
TGCTCGCCACCGCAGAGTCCCTTTCGAAACGGGGGCTTGATGTTAACGAA
ACCTTCGTTTTGCACCTCTTCTTGGATGCCCTCTCCAACGAGTACGCTAT
GACCAAGCACGCCCTCAGACACAAGGAGAGGTTGACAAGGAGTGACGTCC
TGAAGGAGGTCACCATCGAATATCGATCGATCATGGAGAAGGTGAAGGCG
GGGAAAGGCAAGGGCGCGCGCGGCGCCGAGCAGGCCTACCTCGCCGATGG
AGGCGGCCGCCGTGGGCGGTCGTCGTGGCGTGGGGGCGGCCGCCGAGGGC
GGTCGTCCTGGCGTGGTCGTGGCGGTGGCCGCAGCGGCGGCCGCGGGGGC
GGCGACAGCAGCGGAAAAGGCGGTGGCGGCGTCGAGGAGAGCAAGGGGAG
TGGCTCTGGTGGGGCAGATGGCGGCGGTACCGGGGACAAGAAGTTCCCGG
GCCGGTGCTTCACGTGTGGCCGTTTCGGACACACGCAGCAGGACTGCACC
ACCAAGGAGAGCGACTACCTCCCGCAGTGCTCACACTGCGCAGGATGGGG
TCACAGCAAGGACAAGTGCGCGACGGAGGAGGCCGTCCTGGCGCAGATCG
TCCATGCCGACAGCGACGCCGACTCCGTCGACAACCAGGCCTTCTGCGCG
GCGCCGGGCCTGCCAGGCGAGTGTGGTGCTGTTGACCTAGGTCTAGTGGG
GGTAACGGAACTAGGCCAGGATGTCATGGTGTACGTGGCTGATACAGCAG
CCACGTGCTCCATGTTCCGATGCGCAAACGCGTTCGTGAACTAG